Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:152143573-152641698

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi22998 X 152143875 to 152145413 1538 CpG island CpG island 22998
Tssr162378 X 152144174 to 152144190 16 + TSS region transcription start site region 162378
Tssr162379 X 152144197 to 152144226 29 + TSS region transcription start site region 162379
Tssr162380 X 152144240 to 152144251 11 + TSS region transcription start site region 162380
Iqsec2 X 152144268 to 152225236 80968 + protein coding gene IQ motif and Sec7 domain 2
Tssr162381 X 152178945 to 152178957 12 + TSS region transcription start site region 162381
Tssr5704 X 152178964 to 152178967 3 + TSS region transcription start site region 5704
Tssr162382 X 152178977 to 152179018 41 + TSS region transcription start site region 162382
Tssr162383 X 152179052 to 152179064 12 + TSS region transcription start site region 162383
Tssr162384 X 152180485 to 152180507 22 + TSS region transcription start site region 162384
Tssr162385 X 152194243 to 152194253 10 + TSS region transcription start site region 162385
Tssr162386 X 152201967 to 152201975 8 + TSS region transcription start site region 162386
Tssr162387 X 152221673 to 152221685 12 + TSS region transcription start site region 162387
Cpgi22999 X 152232793 to 152232951 158 CpG island CpG island 22999
Kdm5c X 152233020 to 152274535 41515 + protein coding gene lysine (K)-specific demethylase 5C
Tssr162388 X 152233228 to 152233260 32 + TSS region transcription start site region 162388
Cpgi23000 X 152233246 to 152233774 528 CpG island CpG island 23000
Tssr162389 X 152235954 to 152235957 3 + TSS region transcription start site region 162389
Tssr162390 X 152251276 to 152251280 4 + TSS region transcription start site region 162390
Tssr162391 X 152273888 to 152273892 4 + TSS region transcription start site region 162391
Kantr X 152294828 to 152327495 32667 - lincRNA gene Kdm5c adjacent non-coding transcript
Tssr164398 X 152295477 to 152295479 2 - TSS region transcription start site region 164398
n-R5s15 X 152304001 to 152304111 110 + rRNA gene nuclear encoded rRNA 5S 15
Cpgi23001 X 152327242 to 152327495 253 CpG island CpG island 23001
Tssr164399 X 152327430 to 152327491 61 - TSS region transcription start site region 164399
Tspyl2 X 152336852 to 152342425 5573 - protein coding gene TSPY-like 2
Cpgi23002 X 152342132 to 152342704 572 CpG island CpG island 23002
Tssr164400 X 152342404 to 152342410 6 - TSS region transcription start site region 164400
Tssr164401 X 152342419 to 152342430 11 - TSS region transcription start site region 164401
Tssr164402 X 152342433 to 152342457 24 - TSS region transcription start site region 164402
Gpr173 X 152343598 to 152368704 25106 - protein coding gene G-protein coupled receptor 173
Cpgi23003 X 152346826 to 152347127 301 CpG island CpG island 23003
3010001F23Rik X 152368573 to 152416698 48125 + lncRNA gene RIKEN cDNA 3010001F23 gene
Tssr164403 X 152368680 to 152368740 60 - TSS region transcription start site region 164403
Tssr162392 X 152432680 to 152432702 22 + TSS region transcription start site region 162392
Gm4750 X 152432685 to 152434100 1415 + pseudogene predicted gene 4750
Tssr162393 X 152433055 to 152433086 31 + TSS region transcription start site region 162393
Tssr162394 X 152434150 to 152434173 23 + TSS region transcription start site region 162394
Gm8464 X 152490237 to 152491652 1415 - pseudogene predicted pseudogene 8464
Gm41902 X 152506553 to 152514599 8046 - lncRNA gene predicted gene, 41902
Tssr5705 X 152537501 to 152537547 46 + TSS region transcription start site region 5705
Gm7158 X 152544354 to 152545055 701 - pseudogene predicted gene 7158
Cldn34a X 152563334 to 152563969 635 + protein coding gene claudin 34A
Gm8475 X 152565212 to 152565737 525 + pseudogene predicted gene 8475
Tssr5706 X 152584211 to 152584212 1 + TSS region transcription start site region 5706
Shroom2 X 152609509 to 152769465 159956 - protein coding gene shroom family member 2