Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:152031921-153558646

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smc1a X 152016428 to 152061973 45545 + protein coding gene structural maintenance of chromosomes 1A
Tssr162377 X 152036391 to 152036424 33 + TSS region transcription start site region 162377
Gm15267 X 152043049 to 152043512 463 - pseudogene predicted gene 15267
Gm15266 X 152110432 to 152111413 981 - pseudogene predicted gene 15266
Cpgi22998 X 152143875 to 152145413 1538 CpG island CpG island 22998
Tssr162378 X 152144174 to 152144190 16 + TSS region transcription start site region 162378
Tssr162379 X 152144197 to 152144226 29 + TSS region transcription start site region 162379
Tssr162380 X 152144240 to 152144251 11 + TSS region transcription start site region 162380
Iqsec2 X 152144268 to 152225236 80968 + protein coding gene IQ motif and Sec7 domain 2
Tssr162381 X 152178945 to 152178957 12 + TSS region transcription start site region 162381
Tssr5704 X 152178964 to 152178967 3 + TSS region transcription start site region 5704
Tssr162382 X 152178977 to 152179018 41 + TSS region transcription start site region 162382
Tssr162383 X 152179052 to 152179064 12 + TSS region transcription start site region 162383
Tssr162384 X 152180485 to 152180507 22 + TSS region transcription start site region 162384
Tssr162385 X 152194243 to 152194253 10 + TSS region transcription start site region 162385
Tssr162386 X 152201967 to 152201975 8 + TSS region transcription start site region 162386
Tssr162387 X 152221673 to 152221685 12 + TSS region transcription start site region 162387
Cpgi22999 X 152232793 to 152232951 158 CpG island CpG island 22999
Kdm5c X 152233020 to 152274535 41515 + protein coding gene lysine (K)-specific demethylase 5C
Tssr162388 X 152233228 to 152233260 32 + TSS region transcription start site region 162388
Cpgi23000 X 152233246 to 152233774 528 CpG island CpG island 23000
Tssr162389 X 152235954 to 152235957 3 + TSS region transcription start site region 162389
Tssr162390 X 152251276 to 152251280 4 + TSS region transcription start site region 162390
Tssr162391 X 152273888 to 152273892 4 + TSS region transcription start site region 162391
Kantr X 152294828 to 152327495 32667 - lincRNA gene Kdm5c adjacent non-coding transcript
Tssr164398 X 152295477 to 152295479 2 - TSS region transcription start site region 164398
n-R5s15 X 152304001 to 152304111 110 + rRNA gene nuclear encoded rRNA 5S 15
Cpgi23001 X 152327242 to 152327495 253 CpG island CpG island 23001
Tssr164399 X 152327430 to 152327491 61 - TSS region transcription start site region 164399
Tspyl2 X 152336852 to 152342425 5573 - protein coding gene TSPY-like 2
Cpgi23002 X 152342132 to 152342704 572 CpG island CpG island 23002
Tssr164400 X 152342404 to 152342410 6 - TSS region transcription start site region 164400
Tssr164401 X 152342419 to 152342430 11 - TSS region transcription start site region 164401
Tssr164402 X 152342433 to 152342457 24 - TSS region transcription start site region 164402
Gpr173 X 152343598 to 152368704 25106 - protein coding gene G-protein coupled receptor 173
Cpgi23003 X 152346826 to 152347127 301 CpG island CpG island 23003
3010001F23Rik X 152368573 to 152416698 48125 + lncRNA gene RIKEN cDNA 3010001F23 gene
Tssr164403 X 152368680 to 152368740 60 - TSS region transcription start site region 164403
Tssr162392 X 152432680 to 152432702 22 + TSS region transcription start site region 162392
Gm4750 X 152432685 to 152434100 1415 + pseudogene predicted gene 4750
Tssr162393 X 152433055 to 152433086 31 + TSS region transcription start site region 162393
Tssr162394 X 152434150 to 152434173 23 + TSS region transcription start site region 162394
Gm8464 X 152490237 to 152491652 1415 - pseudogene predicted pseudogene 8464
Gm41902 X 152506553 to 152514599 8046 - lncRNA gene predicted gene, 41902
Tssr5705 X 152537501 to 152537547 46 + TSS region transcription start site region 5705
Gm7158 X 152544354 to 152545055 701 - pseudogene predicted gene 7158
Cldn34a X 152563334 to 152563969 635 + protein coding gene claudin 34A
Gm8475 X 152565212 to 152565737 525 + pseudogene predicted gene 8475
Tssr5706 X 152584211 to 152584212 1 + TSS region transcription start site region 5706
Shroom2 X 152609509 to 152769465 159956 - protein coding gene shroom family member 2
Tssr164404 X 152643849 to 152643861 12 - TSS region transcription start site region 164404
Tssr164405 X 152643864 to 152643881 17 - TSS region transcription start site region 164405
Tssr164406 X 152644091 to 152644123 32 - TSS region transcription start site region 164406
Tssr164407 X 152644134 to 152644162 28 - TSS region transcription start site region 164407
Tssr164408 X 152644418 to 152644429 11 - TSS region transcription start site region 164408
Tssr164409 X 152644431 to 152644470 39 - TSS region transcription start site region 164409
Tssr164410 X 152644472 to 152644486 14 - TSS region transcription start site region 164410
Tssr164411 X 152644488 to 152644544 56 - TSS region transcription start site region 164411
Tssr164412 X 152657471 to 152657487 16 - TSS region transcription start site region 164412
Tssr164413 X 152657503 to 152657509 6 - TSS region transcription start site region 164413
Tssr164414 X 152657762 to 152657783 21 - TSS region transcription start site region 164414
Tssr164415 X 152689460 to 152689468 8 - TSS region transcription start site region 164415
Gm18298 X 152700961 to 152701505 544 + pseudogene predicted gene, 18298
C430004N12Rik X 152750899 to 152751590 691 unclassified gene RIKEN cDNA C430004N12 gene
Cpgi23004 X 152769056 to 152770177 1121 CpG island CpG island 23004
Tssr164416 X 152769600 to 152769649 49 - TSS region transcription start site region 164416
Tssr164417 X 152769672 to 152769686 14 - TSS region transcription start site region 164417
Gpr143 X 152781921 to 152808646 26725 + protein coding gene G protein-coupled receptor 143
Tssr162395 X 152781994 to 152782029 35 + TSS region transcription start site region 162395
Cpgi23005 X 152782030 to 152782199 169 CpG island CpG island 23005
DXMit218 X 152789460 to 152789545 85 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 218
Gm24687 X 152868620 to 152868860 240 + ribozyme gene predicted gene, 24687
Tssr164418 X 152875554 to 152875560 6 - TSS region transcription start site region 164418
Rpl7a-ps12 X 152908778 to 152910296 1518 - pseudogene ribosomal protein L7A, pseudogene 12
Gm6472 X 152909505 to 152910155 650 - pseudogene predicted pseudogene 6472
Tssr164419 X 152910146 to 152910156 10 - TSS region transcription start site region 164419
Gm26035 X 152923453 to 152923760 307 - unclassified non-coding RNA gene predicted gene, 26035
Tssr162396 X 153006461 to 153006504 43 + TSS region transcription start site region 162396
Usp51 X 153006469 to 153009416 2947 + protein coding gene ubiquitin specific protease 51
Cpgi23006 X 153007014 to 153007695 681 CpG island CpG island 23006
Mageh1 X 153036166 to 153037563 1397 - protein coding gene melanoma antigen, family H, 1
Tssr164420 X 153036570 to 153036573 3 - TSS region transcription start site region 164420
Cpgi23007 X 153037224 to 153037679 455 CpG island CpG island 23007
Tssr164421 X 153037451 to 153037471 20 - TSS region transcription start site region 164421
Tssr164422 X 153037474 to 153037485 11 - TSS region transcription start site region 164422
Tssr164423 X 153037489 to 153037547 58 - TSS region transcription start site region 164423
Tssr164424 X 153037549 to 153037581 32 - TSS region transcription start site region 164424
9530051G07Rik X 153037629 to 153072915 35286 + lncRNA gene RIKEN cDNA 9530051G07 gene
Gm5396 X 153112923 to 153113454 531 - pseudogene predicted pseudogene 5396
Gm26960 X 153114053 to 153114767 714 + pseudogene predicted gene, 26960
Foxr2 X 153118786 to 153132861 14075 + protein coding gene forkhead box R2
Cpgi23008 X 153139825 to 153140326 501 CpG island CpG island 23008
Tssr162397 X 153139941 to 153140011 70 + TSS region transcription start site region 162397
Rragb X 153139981 to 153171943 31962 + protein coding gene Ras-related GTP binding B
Tssr162398 X 153140012 to 153140045 33 + TSS region transcription start site region 162398
Tssr162399 X 153140074 to 153140091 17 + TSS region transcription start site region 162399
Tssr162400 X 153140111 to 153140122 11 + TSS region transcription start site region 162400
Gm15153 X 153221170 to 153221443 273 + pseudogene predicted gene 15153
Klf8 X 153237466 to 153396132 158666 + protein coding gene Kruppel-like factor 8
Tssr162401 X 153237812 to 153237842 30 + TSS region transcription start site region 162401
Cpgi23009 X 153237844 to 153238101 257 CpG island CpG island 23009
Tssr164425 X 153262875 to 153262879 4 - TSS region transcription start site region 164425
Tssr162402 X 153305703 to 153305735 32 + TSS region transcription start site region 162402
Tssr162403 X 153359575 to 153359590 15 + TSS region transcription start site region 162403
Tssr162404 X 153360091 to 153360107 16 + TSS region transcription start site region 162404
Gm7150 X 153403090 to 153404070 980 - pseudogene predicted gene 7150
Cpgi23010 X 153497842 to 153499313 1471 CpG island CpG island 23010
Tssr162405 X 153498166 to 153498172 6 + TSS region transcription start site region 162405
Tssr162406 X 153498177 to 153498191 14 + TSS region transcription start site region 162406
Tssr162407 X 153498202 to 153498224 22 + TSS region transcription start site region 162407
Ubqln2 X 153498232 to 153501562 3330 + protein coding gene ubiquilin 2
Tssr162408 X 153499345 to 153499358 13 + TSS region transcription start site region 162408
Tssr162409 X 153499368 to 153499381 13 + TSS region transcription start site region 162409
Tssr162410 X 153500298 to 153500310 12 + TSS region transcription start site region 162410
Tssr162411 X 153500331 to 153500362 31 + TSS region transcription start site region 162411
Gm15166 X 153509012 to 153509396 384 - pseudogene predicted gene 15166
Tssr162412 X 153558591 to 153558594 3 + TSS region transcription start site region 162412
Cypt3 X 153558593 to 153559429 836 + protein coding gene cysteine-rich perinuclear theca 3