Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:151575432-152646413

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tswt X 139475662 to 152006342 12530680 QTL testis weight
Phf8 X 151520672 to 151633859 113187 + protein coding gene PHD finger protein 8
Tssr162345 X 151593962 to 151593966 4 + TSS region transcription start site region 162345
Gm5395 X 151655188 to 151656099 911 + pseudogene predicted gene 5395
Gm15151 X 151758017 to 151758193 176 - pseudogene predicted gene 15151
Gm4919 X 151761943 to 151762658 715 - pseudogene predicted gene 4919
Tssr164394 X 151762690 to 151762696 6 - TSS region transcription start site region 164394
n-R5s13 X 151777671 to 151777789 118 + rRNA gene nuclear encoded rRNA 5S 13
Tssr162346 X 151780628 to 151780636 8 + TSS region transcription start site region 162346
Gm15161 X 151783522 to 151783908 386 + pseudogene predicted gene 15161
Gm18498 X 151798389 to 151799736 1347 + pseudogene predicted gene, 18498
Tssr162347 X 151800777 to 151800812 35 + TSS region transcription start site region 162347
Huwe1 X 151800807 to 151935417 134610 + protein coding gene HECT, UBA and WWE domain containing 1
Tssr162348 X 151800873 to 151800912 39 + TSS region transcription start site region 162348
Tssr162349 X 151801013 to 151801083 70 + TSS region transcription start site region 162349
Tssr162350 X 151801144 to 151801161 17 + TSS region transcription start site region 162350
Tssr162351 X 151801163 to 151801203 40 + TSS region transcription start site region 162351
Tssr5702 X 151801208 to 151801226 18 + TSS region transcription start site region 5702
Cpgi22994 X 151801219 to 151801495 276 CpG island CpG island 22994
Cpgi22995 X 151802920 to 151804010 1090 CpG island CpG island 22995
Tssr162352 X 151803236 to 151803243 7 + TSS region transcription start site region 162352
Tssr162353 X 151803276 to 151803287 11 + TSS region transcription start site region 162353
Tssr162354 X 151803313 to 151803376 63 + TSS region transcription start site region 162354
Tssr162355 X 151803399 to 151803404 5 + TSS region transcription start site region 162355
Tssr162356 X 151803408 to 151803419 11 + TSS region transcription start site region 162356
Tssr162357 X 151803642 to 151803673 31 + TSS region transcription start site region 162357
Tssr164395 X 151803692 to 151803703 11 - TSS region transcription start site region 164395
Tssr162358 X 151858204 to 151858208 4 + TSS region transcription start site region 162358
Mir3113 X 151859562 to 151859637 75 + miRNA gene microRNA 3113
Tssr162359 X 151883483 to 151883492 9 + TSS region transcription start site region 162359
Tssr162360 X 151902107 to 151902109 2 + TSS region transcription start site region 162360
Tssr162361 X 151906304 to 151906318 14 + TSS region transcription start site region 162361
Tssr162362 X 151909540 to 151909562 22 + TSS region transcription start site region 162362
Tssr162363 X 151909851 to 151909866 15 + TSS region transcription start site region 162363
Tssr162364 X 151910160 to 151910174 14 + TSS region transcription start site region 162364
Mirlet7f-2 X 151912346 to 151912428 82 + miRNA gene microRNA let7f-2
Mirc49 X 151912346 to 151913321 975 complex/cluster/region microRNA cluster 49, including Mirlet7f-2 through Mir98
Mir98 X 151913214 to 151913321 107 + miRNA gene microRNA 98
Tssr162365 X 151913839 to 151913846 7 + TSS region transcription start site region 162365
Tssr162366 X 151919639 to 151919650 11 + TSS region transcription start site region 162366
Tssr162367 X 151919793 to 151919808 15 + TSS region transcription start site region 162367
Tssr162368 X 151928253 to 151928293 40 + TSS region transcription start site region 162368
Tssr162369 X 151934411 to 151934445 34 + TSS region transcription start site region 162369
Gm15191 X 151945368 to 151946367 999 + pseudogene predicted gene 15191
n-R5s14 X 151985310 to 151985416 106 + rRNA gene nuclear encoded rRNA 5S 14
Cpgi22996 X 152001752 to 152002163 411 CpG island CpG island 22996
Tssr162370 X 152001874 to 152001908 34 + TSS region transcription start site region 162370
Hsd17b10 X 152001896 to 152004442 2546 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 10
Ribc1 X 152004582 to 152016295 11713 - protein coding gene RIB43A domain with coiled-coils 1
DXMit217 X 152006234 to 152006342 108 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 217
Gm39540 X 152009635 to 152014306 4671 + lncRNA gene predicted gene, 39540
DXMit11 X 152012272 to 152012406 134 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 11
Cpgi22997 X 152016236 to 152017118 882 CpG island CpG island 22997
Tssr164396 X 152016269 to 152016302 33 - TSS region transcription start site region 164396
Tssr164397 X 152016344 to 152016351 7 - TSS region transcription start site region 164397
Tssr5703 X 152016418 to 152016427 9 + TSS region transcription start site region 5703
Smc1a X 152016428 to 152061973 45545 + protein coding gene structural maintenance of chromosomes 1A
Tssr162371 X 152016435 to 152016518 83 + TSS region transcription start site region 162371
Tssr162372 X 152023034 to 152023059 25 + TSS region transcription start site region 162372
Tssr162373 X 152026349 to 152026367 18 + TSS region transcription start site region 162373
Tssr162374 X 152026526 to 152026544 18 + TSS region transcription start site region 162374
Tssr162375 X 152026551 to 152026567 16 + TSS region transcription start site region 162375
Tssr162376 X 152027717 to 152027730 13 + TSS region transcription start site region 162376
Tssr162377 X 152036391 to 152036424 33 + TSS region transcription start site region 162377
Gm15267 X 152043049 to 152043512 463 - pseudogene predicted gene 15267
Gm15266 X 152110432 to 152111413 981 - pseudogene predicted gene 15266
Cpgi22998 X 152143875 to 152145413 1538 CpG island CpG island 22998
Tssr162378 X 152144174 to 152144190 16 + TSS region transcription start site region 162378
Tssr162379 X 152144197 to 152144226 29 + TSS region transcription start site region 162379
Tssr162380 X 152144240 to 152144251 11 + TSS region transcription start site region 162380
Iqsec2 X 152144268 to 152225236 80968 + protein coding gene IQ motif and Sec7 domain 2
Tssr162381 X 152178945 to 152178957 12 + TSS region transcription start site region 162381
Tssr5704 X 152178964 to 152178967 3 + TSS region transcription start site region 5704
Tssr162382 X 152178977 to 152179018 41 + TSS region transcription start site region 162382
Tssr162383 X 152179052 to 152179064 12 + TSS region transcription start site region 162383
Tssr162384 X 152180485 to 152180507 22 + TSS region transcription start site region 162384
Tssr162385 X 152194243 to 152194253 10 + TSS region transcription start site region 162385
Tssr162386 X 152201967 to 152201975 8 + TSS region transcription start site region 162386
Tssr162387 X 152221673 to 152221685 12 + TSS region transcription start site region 162387
Cpgi22999 X 152232793 to 152232951 158 CpG island CpG island 22999
Kdm5c X 152233020 to 152274535 41515 + protein coding gene lysine (K)-specific demethylase 5C
Tssr162388 X 152233228 to 152233260 32 + TSS region transcription start site region 162388
Cpgi23000 X 152233246 to 152233774 528 CpG island CpG island 23000
Tssr162389 X 152235954 to 152235957 3 + TSS region transcription start site region 162389
Tssr162390 X 152251276 to 152251280 4 + TSS region transcription start site region 162390
Tssr162391 X 152273888 to 152273892 4 + TSS region transcription start site region 162391
Kantr X 152294828 to 152327495 32667 - lincRNA gene Kdm5c adjacent non-coding transcript
Tssr164398 X 152295477 to 152295479 2 - TSS region transcription start site region 164398
n-R5s15 X 152304001 to 152304111 110 + rRNA gene nuclear encoded rRNA 5S 15
Cpgi23001 X 152327242 to 152327495 253 CpG island CpG island 23001
Tssr164399 X 152327430 to 152327491 61 - TSS region transcription start site region 164399
Tspyl2 X 152336852 to 152342425 5573 - protein coding gene TSPY-like 2
Cpgi23002 X 152342132 to 152342704 572 CpG island CpG island 23002
Tssr164400 X 152342404 to 152342410 6 - TSS region transcription start site region 164400
Tssr164401 X 152342419 to 152342430 11 - TSS region transcription start site region 164401
Tssr164402 X 152342433 to 152342457 24 - TSS region transcription start site region 164402
Gpr173 X 152343598 to 152368704 25106 - protein coding gene G-protein coupled receptor 173
Cpgi23003 X 152346826 to 152347127 301 CpG island CpG island 23003
3010001F23Rik X 152368573 to 152416698 48125 + lncRNA gene RIKEN cDNA 3010001F23 gene
Tssr164403 X 152368680 to 152368740 60 - TSS region transcription start site region 164403
Tssr162392 X 152432680 to 152432702 22 + TSS region transcription start site region 162392
Gm4750 X 152432685 to 152434100 1415 + pseudogene predicted gene 4750
Tssr162393 X 152433055 to 152433086 31 + TSS region transcription start site region 162393
Tssr162394 X 152434150 to 152434173 23 + TSS region transcription start site region 162394
Gm8464 X 152490237 to 152491652 1415 - pseudogene predicted pseudogene 8464
Gm41902 X 152506553 to 152514599 8046 - lncRNA gene predicted gene, 41902
Tssr5705 X 152537501 to 152537547 46 + TSS region transcription start site region 5705
Gm7158 X 152544354 to 152545055 701 - pseudogene predicted gene 7158
Cldn34a X 152563334 to 152563969 635 + protein coding gene claudin 34A
Gm8475 X 152565212 to 152565737 525 + pseudogene predicted gene 8475
Tssr5706 X 152584211 to 152584212 1 + TSS region transcription start site region 5706
Shroom2 X 152609509 to 152769465 159956 - protein coding gene shroom family member 2
Tssr164404 X 152643849 to 152643861 12 - TSS region transcription start site region 164404
Tssr164405 X 152643864 to 152643881 17 - TSS region transcription start site region 164405
Tssr164406 X 152644091 to 152644123 32 - TSS region transcription start site region 164406
Tssr164407 X 152644134 to 152644162 28 - TSS region transcription start site region 164407
Tssr164408 X 152644418 to 152644429 11 - TSS region transcription start site region 164408
Tssr164409 X 152644431 to 152644470 39 - TSS region transcription start site region 164409
Tssr164410 X 152644472 to 152644486 14 - TSS region transcription start site region 164410
Tssr164411 X 152644488 to 152644544 56 - TSS region transcription start site region 164411