Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:151002352-152042384

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125 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tswt X 139475662 to 152006342 12530680 QTL testis weight
Gnl3l X 150983141 to 151017322 34181 - protein coding gene guanine nucleotide binding protein-like 3 (nucleolar)-like
Gm15152 X 151005870 to 151006528 658 + pseudogene predicted gene 15152
Cpgi22988 X 151017159 to 151017419 260 CpG island CpG island 22988
Tssr164388 X 151017226 to 151017249 23 - TSS region transcription start site region 164388
Tssr164389 X 151017251 to 151017296 45 - TSS region transcription start site region 164389
Gm46690 X 151041242 to 151046015 4773 - lncRNA gene predicted gene, 46690
Tssr162321 X 151046131 to 151046143 12 + TSS region transcription start site region 162321
Fgd1 X 151046150 to 151089521 43371 + protein coding gene FYVE, RhoGEF and PH domain containing 1
Cpgi22989 X 151046700 to 151048050 1350 CpG island CpG island 22989
Tssr162322 X 151046881 to 151046905 24 + TSS region transcription start site region 162322
Tssr162323 X 151046912 to 151046933 21 + TSS region transcription start site region 162323
Tssr162324 X 151046946 to 151046975 29 + TSS region transcription start site region 162324
Tssr162325 X 151046979 to 151046993 14 + TSS region transcription start site region 162325
Tssr162326 X 151047193 to 151047227 34 + TSS region transcription start site region 162326
Tssr162327 X 151047310 to 151047327 17 + TSS region transcription start site region 162327
Tssr162328 X 151047333 to 151047357 24 + TSS region transcription start site region 162328
DXMit153 X 151055859 to 151056001 142 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 153
Tssr162329 X 151066742 to 151066753 11 + TSS region transcription start site region 162329
Tssr162330 X 151072354 to 151072363 9 + TSS region transcription start site region 162330
Tsr2 X 151087094 to 151096543 9449 - protein coding gene TSR2 20S rRNA accumulation
Cpgi22990 X 151096080 to 151096653 573 CpG island CpG island 22990
Tssr164390 X 151096510 to 151096530 20 - TSS region transcription start site region 164390
Tssr162331 X 151120879 to 151120883 4 + TSS region transcription start site region 162331
Gm15149 X 151156607 to 151156966 359 + pseudogene predicted gene 15149
Rps12-ps7 X 151165725 to 151166109 384 + pseudogene ribosomal protein S12, pseudogene 7
Tssr162332 X 151168763 to 151168807 44 + TSS region transcription start site region 162332
Cpgi22991 X 151169138 to 151169895 757 CpG island CpG island 22991
Tssr162333 X 151169476 to 151169487 11 + TSS region transcription start site region 162333
Tssr162334 X 151169499 to 151169518 19 + TSS region transcription start site region 162334
Tssr162335 X 151169564 to 151169576 12 + TSS region transcription start site region 162335
Tssr162336 X 151169620 to 151169659 39 + TSS region transcription start site region 162336
Tssr162337 X 151169673 to 151169689 16 + TSS region transcription start site region 162337
Gm15138 X 151169700 to 151171764 2064 + lincRNA gene predicted gene 15138
Wnk3 X 151198078 to 151320152 122074 + protein coding gene WNK lysine deficient protein kinase 3
Tssr5700 X 151200009 to 151200015 6 + TSS region transcription start site region 5700
Rpl21-ps15 X 151215167 to 151215649 482 - pseudogene ribosomal protein L21, pseudogene 15
Gm26441 X 151261918 to 151262021 103 - snRNA gene predicted gene, 26441
A230072E10Rik X 151313335 to 151341879 28544 - antisense lncRNA gene RIKEN cDNA A230072E10 gene
DXMit10 X 151323804 to 151324042 238 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 10
Dbts2 X 151324042 to 7360056 -143963986 QTL diabetes 2
Cpgi22992 X 151343830 to 151345047 1217 CpG island CpG island 22992
Tssr162338 X 151343862 to 151343906 44 + TSS region transcription start site region 162338
Tssr162339 X 151344171 to 151344197 26 + TSS region transcription start site region 162339
Fam120c X 151344175 to 151471842 127667 + protein coding gene family with sequence similarity 120, member C
Tssr162340 X 151344207 to 151344240 33 + TSS region transcription start site region 162340
Tssr164391 X 151344810 to 151344830 20 - TSS region transcription start site region 164391
Tssr162341 X 151359338 to 151359342 4 + TSS region transcription start site region 162341
Gm17845 X 151364628 to 151366534 1906 - pseudogene predicted gene, 17845
Gm22248 X 151384494 to 151384643 149 + snRNA gene predicted gene, 22248
Gm6451 X 151413668 to 151414384 716 - pseudogene predicted gene 6451
Tssr164392 X 151414560 to 151414563 3 - TSS region transcription start site region 164392
Gm15148 X 151493114 to 151493269 155 - pseudogene predicted gene 15148
Cpgi22993 X 151520322 to 151521457 1135 CpG island CpG island 22993
Tssr162342 X 151520655 to 151520681 26 + TSS region transcription start site region 162342
Phf8 X 151520672 to 151633859 113187 + protein coding gene PHD finger protein 8
Tssr164393 X 151520986 to 151520997 11 - TSS region transcription start site region 164393
Tssr5701 X 151521014 to 151521017 3 - TSS region transcription start site region 5701
Tssr162343 X 151521146 to 151521206 60 + TSS region transcription start site region 162343
Tssr162344 X 151522352 to 151522384 32 + TSS region transcription start site region 162344
Gm24460 X 151539700 to 151539805 105 - snoRNA gene predicted gene, 24460
5730419A17Rik X 151542314 to 151543084 770 unclassified gene RIKEN cDNA 5730419A17 gene
DXMit197 X 151549536 to 151549655 119 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 197
Tssr162345 X 151593962 to 151593966 4 + TSS region transcription start site region 162345
Gm5395 X 151655188 to 151656099 911 + pseudogene predicted gene 5395
Gm15151 X 151758017 to 151758193 176 - pseudogene predicted gene 15151
Gm4919 X 151761943 to 151762658 715 - pseudogene predicted gene 4919
Tssr164394 X 151762690 to 151762696 6 - TSS region transcription start site region 164394
n-R5s13 X 151777671 to 151777789 118 + rRNA gene nuclear encoded rRNA 5S 13
Tssr162346 X 151780628 to 151780636 8 + TSS region transcription start site region 162346
Gm15161 X 151783522 to 151783908 386 + pseudogene predicted gene 15161
Gm18498 X 151798389 to 151799736 1347 + pseudogene predicted gene, 18498
Tssr162347 X 151800777 to 151800812 35 + TSS region transcription start site region 162347
Huwe1 X 151800807 to 151935417 134610 + protein coding gene HECT, UBA and WWE domain containing 1
Tssr162348 X 151800873 to 151800912 39 + TSS region transcription start site region 162348
Tssr162349 X 151801013 to 151801083 70 + TSS region transcription start site region 162349
Tssr162350 X 151801144 to 151801161 17 + TSS region transcription start site region 162350
Tssr162351 X 151801163 to 151801203 40 + TSS region transcription start site region 162351
Tssr5702 X 151801208 to 151801226 18 + TSS region transcription start site region 5702
Cpgi22994 X 151801219 to 151801495 276 CpG island CpG island 22994
Cpgi22995 X 151802920 to 151804010 1090 CpG island CpG island 22995
Tssr162352 X 151803236 to 151803243 7 + TSS region transcription start site region 162352
Tssr162353 X 151803276 to 151803287 11 + TSS region transcription start site region 162353
Tssr162354 X 151803313 to 151803376 63 + TSS region transcription start site region 162354
Tssr162355 X 151803399 to 151803404 5 + TSS region transcription start site region 162355
Tssr162356 X 151803408 to 151803419 11 + TSS region transcription start site region 162356
Tssr162357 X 151803642 to 151803673 31 + TSS region transcription start site region 162357
Tssr164395 X 151803692 to 151803703 11 - TSS region transcription start site region 164395
Tssr162358 X 151858204 to 151858208 4 + TSS region transcription start site region 162358
Mir3113 X 151859562 to 151859637 75 + miRNA gene microRNA 3113
Tssr162359 X 151883483 to 151883492 9 + TSS region transcription start site region 162359
Tssr162360 X 151902107 to 151902109 2 + TSS region transcription start site region 162360
Tssr162361 X 151906304 to 151906318 14 + TSS region transcription start site region 162361
Tssr162362 X 151909540 to 151909562 22 + TSS region transcription start site region 162362
Tssr162363 X 151909851 to 151909866 15 + TSS region transcription start site region 162363
Tssr162364 X 151910160 to 151910174 14 + TSS region transcription start site region 162364
Mirc49 X 151912346 to 151913321 975 complex/cluster/region microRNA cluster 49, including Mirlet7f-2 through Mir98
Mirlet7f-2 X 151912346 to 151912428 82 + miRNA gene microRNA let7f-2
Mir98 X 151913214 to 151913321 107 + miRNA gene microRNA 98
Tssr162365 X 151913839 to 151913846 7 + TSS region transcription start site region 162365
Tssr162366 X 151919639 to 151919650 11 + TSS region transcription start site region 162366
Tssr162367 X 151919793 to 151919808 15 + TSS region transcription start site region 162367
Tssr162368 X 151928253 to 151928293 40 + TSS region transcription start site region 162368
Tssr162369 X 151934411 to 151934445 34 + TSS region transcription start site region 162369
Gm15191 X 151945368 to 151946367 999 + pseudogene predicted gene 15191
n-R5s14 X 151985310 to 151985416 106 + rRNA gene nuclear encoded rRNA 5S 14
Cpgi22996 X 152001752 to 152002163 411 CpG island CpG island 22996
Tssr162370 X 152001874 to 152001908 34 + TSS region transcription start site region 162370
Hsd17b10 X 152001896 to 152004442 2546 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 10
Ribc1 X 152004582 to 152016295 11713 - protein coding gene RIB43A domain with coiled-coils 1
DXMit217 X 152006234 to 152006342 108 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 217
Gm39540 X 152009635 to 152014306 4671 + lncRNA gene predicted gene, 39540
DXMit11 X 152012272 to 152012406 134 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 11
Cpgi22997 X 152016236 to 152017118 882 CpG island CpG island 22997
Tssr164396 X 152016269 to 152016302 33 - TSS region transcription start site region 164396
Tssr164397 X 152016344 to 152016351 7 - TSS region transcription start site region 164397
Tssr5703 X 152016418 to 152016427 9 + TSS region transcription start site region 5703
Smc1a X 152016428 to 152061973 45545 + protein coding gene structural maintenance of chromosomes 1A
Tssr162371 X 152016435 to 152016518 83 + TSS region transcription start site region 162371
Tssr162372 X 152023034 to 152023059 25 + TSS region transcription start site region 162372
Tssr162373 X 152026349 to 152026367 18 + TSS region transcription start site region 162373
Tssr162374 X 152026526 to 152026544 18 + TSS region transcription start site region 162374
Tssr162375 X 152026551 to 152026567 16 + TSS region transcription start site region 162375
Tssr162376 X 152027717 to 152027730 13 + TSS region transcription start site region 162376
Tssr162377 X 152036391 to 152036424 33 + TSS region transcription start site region 162377