Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:149242392-152072407

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234 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tswt X 139475662 to 152006342 12530680 QTL testis weight
Gm15093 X 149272377 to 149305003 32626 + protein coding gene predicted gene 15093
Gm15098 X 149327076 to 149328583 1507 + pseudogene predicted gene 15098
Gm15089 X 149331749 to 149332944 1195 + pseudogene predicted gene 15089
Gm8366 X 149380417 to 149382185 1768 + pseudogene predicted gene 8366
Gm6499 X 149392667 to 149394297 1630 - pseudogene predicted gene 6499
Gm15100 X 149446885 to 149447585 700 - antisense lncRNA gene predicted gene 15100
Gm15085 X 149447617 to 149487784 40167 + protein coding gene predicted gene 15085
Gm2346 X 149506004 to 149507751 1747 - pseudogene predicted gene 2346
Gm15086 X 149593838 to 149594538 700 - antisense lncRNA gene predicted gene 15086
Gm10439 X 149594601 to 149636621 42020 + protein coding gene predicted gene 10439
Gm15101 X 149658834 to 149660335 1501 + pseudogene predicted gene 15101
Gm8383 X 149716151 to 149717920 1769 + pseudogene predicted gene 8383
Gm8389 X 149728018 to 149729663 1645 - pseudogene predicted gene 8389
Gm15097 X 149784473 to 149826694 42221 + protein coding gene predicted gene 15097
Gm15095 X 149848723 to 149850152 1429 + pseudogene predicted gene 15095
Gm15087 X 149859742 to 149860913 1171 + pseudogene predicted gene 15087
Gm6512 X 149897436 to 149898967 1531 - pseudogene predicted gene 6512
Gm15091 X 149941655 to 149984982 43327 + protein coding gene predicted gene 15091
Ferq1 X 150000000 to 55000000 -95000000 QTL genetic fertility QTL 1
Gm15102 X 150013711 to 150015118 1407 + pseudogene predicted gene 15102
Gm15103 X 150032993 to 150034051 1058 + pseudogene predicted gene 15103
Gm8402 X 150083529 to 150085298 1769 + pseudogene predicted gene 8402
Gm21929 X 150095681 to 150097386 1705 - pseudogene predicted gene, 21929
Tssr162302 X 150147492 to 150147503 11 + TSS region transcription start site region 162302
Gm20153 X 150157426 to 150177319 19893 - protein coding gene predicted gene, 20153
Tssr164350 X 150177281 to 150177284 3 - TSS region transcription start site region 164350
Gm5946 X 150220899 to 150223351 2452 - pseudogene predicted gene 5946
Gm15104 X 150312601 to 150333065 20464 - lincRNA gene predicted gene 15104
Tssr164351 X 150336289 to 150336292 3 - TSS region transcription start site region 164351
Tssr164352 X 150367160 to 150367164 4 - TSS region transcription start site region 164352
Gm15105 X 150367713 to 150367916 203 - pseudogene predicted gene 15105
Tmem29 X 150397773 to 150459154 61381 - protein coding gene transmembrane protein 29
Tssr164353 X 150415077 to 150415090 13 - TSS region transcription start site region 164353
Gm15129 X 150431503 to 150431781 278 + pseudogene predicted gene 15129
Tssr164354 X 150435482 to 150435490 8 - TSS region transcription start site region 164354
Tssr164355 X 150435510 to 150435541 31 - TSS region transcription start site region 164355
Tssr164356 X 150440835 to 150440846 11 - TSS region transcription start site region 164356
Tssr164357 X 150440887 to 150440937 50 - TSS region transcription start site region 164357
Tssr164358 X 150441058 to 150441069 11 - TSS region transcription start site region 164358
Tssr164359 X 150457376 to 150457379 3 - TSS region transcription start site region 164359
Tssr164360 X 150458803 to 150458808 5 - TSS region transcription start site region 164360
Cpgi22986 X 150459017 to 150459241 224 CpG island CpG island 22986
Tssr164361 X 150459128 to 150459157 29 - TSS region transcription start site region 164361
3110067C02Rik X 150463648 to 150465728 2080 + pseudogene RIKEN cDNA 3110067C02 gene
Gm46684 X 150490010 to 150496271 6261 - lncRNA gene predicted gene, 46684
Tssr162303 X 150497504 to 150497519 15 + TSS region transcription start site region 162303
Apex2 X 150519519 to 150589868 70349 - protein coding gene apurinic/apyrimidinic endonuclease 2
Mir3620 X 150547385 to 150547445 60 - miRNA gene microRNA 3620
Alas2 X 150547417 to 150570622 23205 + protein coding gene aminolevulinic acid synthase 2, erythroid
Tssr162304 X 150547437 to 150547452 15 + TSS region transcription start site region 162304
Tssr162305 X 150550940 to 150550954 14 + TSS region transcription start site region 162305
Tssr162306 X 150550964 to 150550982 18 + TSS region transcription start site region 162306
Tssr162307 X 150552140 to 150552180 40 + TSS region transcription start site region 162307
Tssr5699 X 150552267 to 150552282 15 + TSS region transcription start site region 5699
Tssr162308 X 150554005 to 150554018 13 + TSS region transcription start site region 162308
Tssr164362 X 150559779 to 150559782 3 - TSS region transcription start site region 164362
Tssr162309 X 150565226 to 150565241 15 + TSS region transcription start site region 162309
Tssr162310 X 150566601 to 150566629 28 + TSS region transcription start site region 162310
Tssr164363 X 150583915 to 150583919 4 - TSS region transcription start site region 164363
Cpgi22987 X 150588008 to 150588189 181 CpG island CpG island 22987
Tssr164364 X 150588044 to 150588057 13 - TSS region transcription start site region 164364
Tssr164365 X 150588073 to 150588153 80 - TSS region transcription start site region 164365
Tssr162311 X 150588223 to 150588260 37 + TSS region transcription start site region 162311
Pfkfb1 X 150588258 to 150643878 55620 + protein coding gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
Tssr164366 X 150589809 to 150589821 12 - TSS region transcription start site region 164366
Tssr164367 X 150589847 to 150589861 14 - TSS region transcription start site region 164367
Tssr164368 X 150589863 to 150589888 25 - TSS region transcription start site region 164368
Tssr162312 X 150589886 to 150589899 13 + TSS region transcription start site region 162312
Tssr162313 X 150589907 to 150589996 89 + TSS region transcription start site region 162313
Tssr162314 X 150590037 to 150590046 9 + TSS region transcription start site region 162314
Tssr162315 X 150593940 to 150593945 5 + TSS region transcription start site region 162315
Tssr162316 X 150594325 to 150594336 11 + TSS region transcription start site region 162316
Tssr162317 X 150594338 to 150594358 20 + TSS region transcription start site region 162317
Tssr162318 X 150594393 to 150594413 20 + TSS region transcription start site region 162318
Tssr162319 X 150594420 to 150594446 26 + TSS region transcription start site region 162319
Tssr164369 X 150594775 to 150594781 6 - TSS region transcription start site region 164369
Tro X 150645304 to 150657583 12279 - protein coding gene trophinin
Tssr164370 X 150654867 to 150654912 45 - TSS region transcription start site region 164370
Tssr164371 X 150655578 to 150655596 18 - TSS region transcription start site region 164371
Tssr164372 X 150657122 to 150657133 11 - TSS region transcription start site region 164372
Tssr164373 X 150657366 to 150657377 11 - TSS region transcription start site region 164373
Tssr164374 X 150657392 to 150657407 15 - TSS region transcription start site region 164374
Gm15132 X 150688145 to 150688796 651 + pseudogene predicted gene 15132
Gm15131 X 150707021 to 150707615 594 - pseudogene predicted gene 15131
Gm33991 X 150710574 to 150712406 1832 + lncRNA gene predicted gene, 33991
Gm18773 X 150780580 to 150782197 1617 - pseudogene predicted gene, 18773
Maged2 X 150806421 to 150814340 7919 - protein coding gene melanoma antigen, family D, 2
Gm24907 X 150807859 to 150807986 127 - snoRNA gene predicted gene, 24907
Tssr164375 X 150812448 to 150812489 41 - TSS region transcription start site region 164375
Tssr164376 X 150812789 to 150812805 16 - TSS region transcription start site region 164376
Tssr164377 X 150812877 to 150812930 53 - TSS region transcription start site region 164377
Tssr164378 X 150812932 to 150812973 41 - TSS region transcription start site region 164378
Tssr164379 X 150813637 to 150813712 75 - TSS region transcription start site region 164379
Tssr164380 X 150814252 to 150814263 11 - TSS region transcription start site region 164380
Tssr164381 X 150814265 to 150814320 55 - TSS region transcription start site region 164381
Tssr164382 X 150815644 to 150815688 44 - TSS region transcription start site region 164382
Tssr162320 X 150826925 to 150826929 4 + TSS region transcription start site region 162320
Itih5l-ps X 150826972 to 150857053 30081 + pseudogene inter-alpha (globulin) inhibitor H5-like, pseudogene
Gm10437 X 150838363 to 150842025 3662 unclassified gene predicted gene 10437
Gm27191 X 150848838 to 150849378 540 - lincRNA gene predicted gene 27191
Gm8424 X 150924620 to 150926159 1539 - pseudogene predicted gene 8424
Tssr164383 X 150954764 to 150954801 37 - TSS region transcription start site region 164383
Tssr164384 X 150954845 to 150954852 7 - TSS region transcription start site region 164384
Tssr164385 X 150954856 to 150954868 12 - TSS region transcription start site region 164385
Tssr164386 X 150954886 to 150954898 12 - TSS region transcription start site region 164386
Gnl3l X 150983141 to 151017322 34181 - protein coding gene guanine nucleotide binding protein-like 3 (nucleolar)-like
Tssr164387 X 150986084 to 150986115 31 - TSS region transcription start site region 164387
Lgth14 X 151000000 to 95000000 -56000000 QTL body length 14
Wght12 X 151000000 to 95000000 -56000000 QTL weight 12
Gm15152 X 151005870 to 151006528 658 + pseudogene predicted gene 15152
Cpgi22988 X 151017159 to 151017419 260 CpG island CpG island 22988
Tssr164388 X 151017226 to 151017249 23 - TSS region transcription start site region 164388
Tssr164389 X 151017251 to 151017296 45 - TSS region transcription start site region 164389
Gm46690 X 151041242 to 151046015 4773 - lncRNA gene predicted gene, 46690
Tssr162321 X 151046131 to 151046143 12 + TSS region transcription start site region 162321
Fgd1 X 151046150 to 151089521 43371 + protein coding gene FYVE, RhoGEF and PH domain containing 1
Cpgi22989 X 151046700 to 151048050 1350 CpG island CpG island 22989
Tssr162322 X 151046881 to 151046905 24 + TSS region transcription start site region 162322
Tssr162323 X 151046912 to 151046933 21 + TSS region transcription start site region 162323
Tssr162324 X 151046946 to 151046975 29 + TSS region transcription start site region 162324
Tssr162325 X 151046979 to 151046993 14 + TSS region transcription start site region 162325
Tssr162326 X 151047193 to 151047227 34 + TSS region transcription start site region 162326
Tssr162327 X 151047310 to 151047327 17 + TSS region transcription start site region 162327
Tssr162328 X 151047333 to 151047357 24 + TSS region transcription start site region 162328
DXMit153 X 151055859 to 151056001 142 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 153
Tssr162329 X 151066742 to 151066753 11 + TSS region transcription start site region 162329
Tssr162330 X 151072354 to 151072363 9 + TSS region transcription start site region 162330
Tsr2 X 151087094 to 151096543 9449 - protein coding gene TSR2 20S rRNA accumulation
Cpgi22990 X 151096080 to 151096653 573 CpG island CpG island 22990
Tssr164390 X 151096510 to 151096530 20 - TSS region transcription start site region 164390
Tssr162331 X 151120879 to 151120883 4 + TSS region transcription start site region 162331
Gm15149 X 151156607 to 151156966 359 + pseudogene predicted gene 15149
Rps12-ps7 X 151165725 to 151166109 384 + pseudogene ribosomal protein S12, pseudogene 7
Tssr162332 X 151168763 to 151168807 44 + TSS region transcription start site region 162332
Cpgi22991 X 151169138 to 151169895 757 CpG island CpG island 22991
Tssr162333 X 151169476 to 151169487 11 + TSS region transcription start site region 162333
Tssr162334 X 151169499 to 151169518 19 + TSS region transcription start site region 162334
Tssr162335 X 151169564 to 151169576 12 + TSS region transcription start site region 162335
Tssr162336 X 151169620 to 151169659 39 + TSS region transcription start site region 162336
Tssr162337 X 151169673 to 151169689 16 + TSS region transcription start site region 162337
Gm15138 X 151169700 to 151171764 2064 + lincRNA gene predicted gene 15138
Wnk3 X 151198078 to 151320152 122074 + protein coding gene WNK lysine deficient protein kinase 3
Tssr5700 X 151200009 to 151200015 6 + TSS region transcription start site region 5700
Rpl21-ps15 X 151215167 to 151215649 482 - pseudogene ribosomal protein L21, pseudogene 15
Gm26441 X 151261918 to 151262021 103 - snRNA gene predicted gene, 26441
A230072E10Rik X 151313335 to 151341879 28544 - antisense lncRNA gene RIKEN cDNA A230072E10 gene
DXMit10 X 151323804 to 151324042 238 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 10
Dbts2 X 151324042 to 7360056 -143963986 QTL diabetes 2
Cpgi22992 X 151343830 to 151345047 1217 CpG island CpG island 22992
Tssr162338 X 151343862 to 151343906 44 + TSS region transcription start site region 162338
Tssr162339 X 151344171 to 151344197 26 + TSS region transcription start site region 162339
Fam120c X 151344175 to 151471842 127667 + protein coding gene family with sequence similarity 120, member C
Tssr162340 X 151344207 to 151344240 33 + TSS region transcription start site region 162340
Tssr164391 X 151344810 to 151344830 20 - TSS region transcription start site region 164391
Tssr162341 X 151359338 to 151359342 4 + TSS region transcription start site region 162341
Gm17845 X 151364628 to 151366534 1906 - pseudogene predicted gene, 17845
Gm22248 X 151384494 to 151384643 149 + snRNA gene predicted gene, 22248
Gm6451 X 151413668 to 151414384 716 - pseudogene predicted gene 6451
Tssr164392 X 151414560 to 151414563 3 - TSS region transcription start site region 164392
Gm15148 X 151493114 to 151493269 155 - pseudogene predicted gene 15148
Cpgi22993 X 151520322 to 151521457 1135 CpG island CpG island 22993
Tssr162342 X 151520655 to 151520681 26 + TSS region transcription start site region 162342
Phf8 X 151520672 to 151633859 113187 + protein coding gene PHD finger protein 8
Tssr164393 X 151520986 to 151520997 11 - TSS region transcription start site region 164393
Tssr5701 X 151521014 to 151521017 3 - TSS region transcription start site region 5701
Tssr162343 X 151521146 to 151521206 60 + TSS region transcription start site region 162343
Tssr162344 X 151522352 to 151522384 32 + TSS region transcription start site region 162344
Gm24460 X 151539700 to 151539805 105 - snoRNA gene predicted gene, 24460
5730419A17Rik X 151542314 to 151543084 770 unclassified gene RIKEN cDNA 5730419A17 gene
DXMit197 X 151549536 to 151549655 119 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 197
Tssr162345 X 151593962 to 151593966 4 + TSS region transcription start site region 162345
Gm5395 X 151655188 to 151656099 911 + pseudogene predicted gene 5395
Gm15151 X 151758017 to 151758193 176 - pseudogene predicted gene 15151
Gm4919 X 151761943 to 151762658 715 - pseudogene predicted gene 4919
Tssr164394 X 151762690 to 151762696 6 - TSS region transcription start site region 164394
n-R5s13 X 151777671 to 151777789 118 + rRNA gene nuclear encoded rRNA 5S 13
Tssr162346 X 151780628 to 151780636 8 + TSS region transcription start site region 162346
Gm15161 X 151783522 to 151783908 386 + pseudogene predicted gene 15161
Gm18498 X 151798389 to 151799736 1347 + pseudogene predicted gene, 18498
Tssr162347 X 151800777 to 151800812 35 + TSS region transcription start site region 162347
Huwe1 X 151800807 to 151935417 134610 + protein coding gene HECT, UBA and WWE domain containing 1
Tssr162348 X 151800873 to 151800912 39 + TSS region transcription start site region 162348
Tssr162349 X 151801013 to 151801083 70 + TSS region transcription start site region 162349
Tssr162350 X 151801144 to 151801161 17 + TSS region transcription start site region 162350
Tssr162351 X 151801163 to 151801203 40 + TSS region transcription start site region 162351
Tssr5702 X 151801208 to 151801226 18 + TSS region transcription start site region 5702
Cpgi22994 X 151801219 to 151801495 276 CpG island CpG island 22994
Cpgi22995 X 151802920 to 151804010 1090 CpG island CpG island 22995
Tssr162352 X 151803236 to 151803243 7 + TSS region transcription start site region 162352
Tssr162353 X 151803276 to 151803287 11 + TSS region transcription start site region 162353
Tssr162354 X 151803313 to 151803376 63 + TSS region transcription start site region 162354
Tssr162355 X 151803399 to 151803404 5 + TSS region transcription start site region 162355
Tssr162356 X 151803408 to 151803419 11 + TSS region transcription start site region 162356
Tssr162357 X 151803642 to 151803673 31 + TSS region transcription start site region 162357
Tssr164395 X 151803692 to 151803703 11 - TSS region transcription start site region 164395
Tssr162358 X 151858204 to 151858208 4 + TSS region transcription start site region 162358
Mir3113 X 151859562 to 151859637 75 + miRNA gene microRNA 3113
Tssr162359 X 151883483 to 151883492 9 + TSS region transcription start site region 162359
Tssr162360 X 151902107 to 151902109 2 + TSS region transcription start site region 162360