Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:143816164-144856169

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Capn6 X 143802236 to 143827412 25176 - protein coding gene calpain 6
Gm47298 X 143827223 to 143827344 121 - miRNA gene predicted gene, 47298
Tssr164314 X 143827306 to 143827367 61 - TSS region transcription start site region 164314
Tssr164315 X 143827378 to 143827386 8 - TSS region transcription start site region 164315
Tssr164316 X 143827391 to 143827402 11 - TSS region transcription start site region 164316
Dcx X 143855842 to 143933275 77433 - protein coding gene doublecortin
Tssr164317 X 143860396 to 143860408 12 - TSS region transcription start site region 164317
Tssr164318 X 143860934 to 143860973 39 - TSS region transcription start site region 164318
Tssr164319 X 143860974 to 143861006 32 - TSS region transcription start site region 164319
Tssr164320 X 143861089 to 143861100 11 - TSS region transcription start site region 164320
Tssr164321 X 143861149 to 143861160 11 - TSS region transcription start site region 164321
Tssr164322 X 143861172 to 143861182 10 - TSS region transcription start site region 164322
Tssr164323 X 143861244 to 143861254 10 - TSS region transcription start site region 164323
Tssr164324 X 143861281 to 143861321 40 - TSS region transcription start site region 164324
Tssr164325 X 143861338 to 143861352 14 - TSS region transcription start site region 164325
Tssr164326 X 143861441 to 143861453 12 - TSS region transcription start site region 164326
DXMit216 X 143902153 to 143902273 120 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 216
Cmv2 X 143902153 to 143902273 120 QTL cytomegalovirus resistance 2
DXDcr4 X 143902183 to 143902279 96 DNA segment DNA Segment, Chr X, Derry C. Roopenian 4
Tssr164327 X 143923221 to 143923234 13 - TSS region transcription start site region 164327
Tssr164328 X 143923423 to 143923432 9 - TSS region transcription start site region 164328
Tssr164329 X 143931433 to 143931469 36 - TSS region transcription start site region 164329
Tssr164330 X 143932997 to 143933008 11 - TSS region transcription start site region 164330
Tssr164331 X 143933023 to 143933055 32 - TSS region transcription start site region 164331
Tssr164332 X 143933089 to 143933142 53 - TSS region transcription start site region 164332
Tssr164333 X 143933144 to 143933151 7 - TSS region transcription start site region 164333
Tssr164334 X 143933178 to 143933196 18 - TSS region transcription start site region 164334
Tssr164335 X 143933213 to 143933224 11 - TSS region transcription start site region 164335
Gm33039 X 143942083 to 143949732 7649 - lncRNA gene predicted gene, 33039
Gm15048 X 144148494 to 144149135 641 + pseudogene predicted gene 15048
A730046J19Rik X 144153695 to 144166274 12579 + lincRNA gene RIKEN cDNA A730046J19 gene
Tssr162272 X 144153696 to 144153714 18 + TSS region transcription start site region 162272
Tssr162273 X 144153716 to 144153765 49 + TSS region transcription start site region 162273
Gm8199 X 144232766 to 144233581 815 - pseudogene predicted gene 8199
Gm8202 X 144236903 to 144237212 309 - pseudogene predicted gene 8202
Gm15067 X 144268049 to 144268204 155 - pseudogene predicted gene 15067
Gm15066 X 144285726 to 144288333 2607 - pseudogene predicted gene 15066
Mir680-2 X 144297790 to 144297899 109 + miRNA gene microRNA 680-2
Gm33235 X 144314446 to 144317677 3231 - lncRNA gene predicted gene, 33235
Cpgi22981 X 144317788 to 144319175 1387 CpG island CpG island 22981
Tssr162274 X 144317799 to 144317801 2 + TSS region transcription start site region 162274
Alg13 X 144317966 to 144374450 56484 + protein coding gene asparagine-linked glycosylation 13
Tssr162275 X 144317991 to 144318034 43 + TSS region transcription start site region 162275
Tssr162276 X 144318038 to 144318056 18 + TSS region transcription start site region 162276
Tssr162277 X 144318065 to 144318080 15 + TSS region transcription start site region 162277
Gm2214 X 144320926 to 144321255 329 - pseudogene predicted gene 2214
Tssr162278 X 144335787 to 144335831 44 + TSS region transcription start site region 162278
Tssr162279 X 144335903 to 144335927 24 + TSS region transcription start site region 162279
Tssr162280 X 144335936 to 144335999 63 + TSS region transcription start site region 162280
Tssr162281 X 144336016 to 144336023 7 + TSS region transcription start site region 162281
Tssr162282 X 144336047 to 144336054 7 + TSS region transcription start site region 162282
Tssr162283 X 144336065 to 144336076 11 + TSS region transcription start site region 162283
Tssr162284 X 144336079 to 144336092 13 + TSS region transcription start site region 162284
Tssr162285 X 144336095 to 144336108 13 + TSS region transcription start site region 162285
Tssr162286 X 144336124 to 144336138 14 + TSS region transcription start site region 162286
Tssr162287 X 144336147 to 144336150 3 + TSS region transcription start site region 162287
Tssr162288 X 144336164 to 144336169 5 + TSS region transcription start site region 162288
Tssr162289 X 144336188 to 144336197 9 + TSS region transcription start site region 162289
Tssr162290 X 144336212 to 144336229 17 + TSS region transcription start site region 162290
Tssr162291 X 144336694 to 144336697 3 + TSS region transcription start site region 162291
Tssr162292 X 144352686 to 144352697 11 + TSS region transcription start site region 162292
Tssr162293 X 144364049 to 144364073 24 + TSS region transcription start site region 162293
Trpc5 X 144381671 to 144688180 306509 - protein coding gene transient receptor potential cation channel, subfamily C, member 5
Tssr162294 X 144455916 to 144455924 8 + TSS region transcription start site region 162294
Tssr162295 X 144455950 to 144455961 11 + TSS region transcription start site region 162295
Trpc5os X 144456581 to 144477066 20485 + protein coding gene transient receptor potential cation channel, subfamily C, member 5, opposite strand
Gm15071 X 144499348 to 144500441 1093 + pseudogene predicted gene 15071
Mageb16-ps1 X 144555211 to 144556337 1126 - pseudogene melanoma antigen family B, 16, pseudogene 1
DXMit118 X 144632777 to 144632910 133 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 118
Rtl4 X 144688907 to 145122411 433504 + protein coding gene retrotransposon Gag like 4
Gm41903 X 144777680 to 144829176 51496 - pseudogene predicted gene, 41903
Gm26024 X 144820187 to 144820508 321 + unclassified non-coding RNA gene predicted gene, 26024
Gm8216 X 144847683 to 144848277 594 + pseudogene predicted gene 8216