Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:143705165-147305172

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pak3 X 143518591 to 143797796 279205 + protein coding gene p21 (RAC1) activated kinase 3
Tssr162271 X 143784232 to 143784235 3 + TSS region transcription start site region 162271
Tssr164313 X 143792498 to 143792501 3 - TSS region transcription start site region 164313
Capn6 X 143802236 to 143827412 25176 - protein coding gene calpain 6
Gm47298 X 143827223 to 143827344 121 - miRNA gene predicted gene, 47298
Tssr164314 X 143827306 to 143827367 61 - TSS region transcription start site region 164314
Tssr164315 X 143827378 to 143827386 8 - TSS region transcription start site region 164315
Tssr164316 X 143827391 to 143827402 11 - TSS region transcription start site region 164316
Dcx X 143855842 to 143933275 77433 - protein coding gene doublecortin
Tssr164317 X 143860396 to 143860408 12 - TSS region transcription start site region 164317
Tssr164318 X 143860934 to 143860973 39 - TSS region transcription start site region 164318
Tssr164319 X 143860974 to 143861006 32 - TSS region transcription start site region 164319
Tssr164320 X 143861089 to 143861100 11 - TSS region transcription start site region 164320
Tssr164321 X 143861149 to 143861160 11 - TSS region transcription start site region 164321
Tssr164322 X 143861172 to 143861182 10 - TSS region transcription start site region 164322
Tssr164323 X 143861244 to 143861254 10 - TSS region transcription start site region 164323
Tssr164324 X 143861281 to 143861321 40 - TSS region transcription start site region 164324
Tssr164325 X 143861338 to 143861352 14 - TSS region transcription start site region 164325
Tssr164326 X 143861441 to 143861453 12 - TSS region transcription start site region 164326
DXMit216 X 143902153 to 143902273 120 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 216
Cmv2 X 143902153 to 143902273 120 QTL cytomegalovirus resistance 2
DXDcr4 X 143902183 to 143902279 96 DNA segment DNA Segment, Chr X, Derry C. Roopenian 4
Tssr164327 X 143923221 to 143923234 13 - TSS region transcription start site region 164327
Tssr164328 X 143923423 to 143923432 9 - TSS region transcription start site region 164328
Tssr164329 X 143931433 to 143931469 36 - TSS region transcription start site region 164329
Tssr164330 X 143932997 to 143933008 11 - TSS region transcription start site region 164330
Tssr164331 X 143933023 to 143933055 32 - TSS region transcription start site region 164331
Tssr164332 X 143933089 to 143933142 53 - TSS region transcription start site region 164332
Tssr164333 X 143933144 to 143933151 7 - TSS region transcription start site region 164333
Tssr164334 X 143933178 to 143933196 18 - TSS region transcription start site region 164334
Tssr164335 X 143933213 to 143933224 11 - TSS region transcription start site region 164335
Gm33039 X 143942083 to 143949732 7649 - lncRNA gene predicted gene, 33039
Gm15048 X 144148494 to 144149135 641 + pseudogene predicted gene 15048
A730046J19Rik X 144153695 to 144166274 12579 + lincRNA gene RIKEN cDNA A730046J19 gene
Tssr162272 X 144153696 to 144153714 18 + TSS region transcription start site region 162272
Tssr162273 X 144153716 to 144153765 49 + TSS region transcription start site region 162273
Gm8199 X 144232766 to 144233581 815 - pseudogene predicted gene 8199
Gm8202 X 144236903 to 144237212 309 - pseudogene predicted gene 8202
Gm15067 X 144268049 to 144268204 155 - pseudogene predicted gene 15067
Gm15066 X 144285726 to 144288333 2607 - pseudogene predicted gene 15066
Mir680-2 X 144297790 to 144297899 109 + miRNA gene microRNA 680-2
Gm33235 X 144314446 to 144317677 3231 - lncRNA gene predicted gene, 33235
Cpgi22981 X 144317788 to 144319175 1387 CpG island CpG island 22981
Tssr162274 X 144317799 to 144317801 2 + TSS region transcription start site region 162274
Alg13 X 144317966 to 144374450 56484 + protein coding gene asparagine-linked glycosylation 13
Tssr162275 X 144317991 to 144318034 43 + TSS region transcription start site region 162275
Tssr162276 X 144318038 to 144318056 18 + TSS region transcription start site region 162276
Tssr162277 X 144318065 to 144318080 15 + TSS region transcription start site region 162277
Gm2214 X 144320926 to 144321255 329 - pseudogene predicted gene 2214
Tssr162278 X 144335787 to 144335831 44 + TSS region transcription start site region 162278
Tssr162279 X 144335903 to 144335927 24 + TSS region transcription start site region 162279
Tssr162280 X 144335936 to 144335999 63 + TSS region transcription start site region 162280
Tssr162281 X 144336016 to 144336023 7 + TSS region transcription start site region 162281
Tssr162282 X 144336047 to 144336054 7 + TSS region transcription start site region 162282
Tssr162283 X 144336065 to 144336076 11 + TSS region transcription start site region 162283
Tssr162284 X 144336079 to 144336092 13 + TSS region transcription start site region 162284
Tssr162285 X 144336095 to 144336108 13 + TSS region transcription start site region 162285
Tssr162286 X 144336124 to 144336138 14 + TSS region transcription start site region 162286
Tssr162287 X 144336147 to 144336150 3 + TSS region transcription start site region 162287
Tssr162288 X 144336164 to 144336169 5 + TSS region transcription start site region 162288
Tssr162289 X 144336188 to 144336197 9 + TSS region transcription start site region 162289
Tssr162290 X 144336212 to 144336229 17 + TSS region transcription start site region 162290
Tssr162291 X 144336694 to 144336697 3 + TSS region transcription start site region 162291
Tssr162292 X 144352686 to 144352697 11 + TSS region transcription start site region 162292
Tssr162293 X 144364049 to 144364073 24 + TSS region transcription start site region 162293
Trpc5 X 144381671 to 144688180 306509 - protein coding gene transient receptor potential cation channel, subfamily C, member 5
Tssr162294 X 144455916 to 144455924 8 + TSS region transcription start site region 162294
Tssr162295 X 144455950 to 144455961 11 + TSS region transcription start site region 162295
Trpc5os X 144456581 to 144477066 20485 + protein coding gene transient receptor potential cation channel, subfamily C, member 5, opposite strand
Gm15071 X 144499348 to 144500441 1093 + pseudogene predicted gene 15071
Mageb16-ps1 X 144555211 to 144556337 1126 - pseudogene melanoma antigen family B, 16, pseudogene 1
DXMit118 X 144632777 to 144632910 133 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 118
Rtl4 X 144688907 to 145122411 433504 + protein coding gene retrotransposon Gag like 4
Gm41903 X 144777680 to 144829176 51496 - pseudogene predicted gene, 41903
Gm26024 X 144820187 to 144820508 321 + unclassified non-coding RNA gene predicted gene, 26024
Gm8216 X 144847683 to 144848277 594 + pseudogene predicted gene 8216
Mir3472 X 145039344 to 145039414 70 + miRNA gene microRNA 3472
Gm25097 X 145160477 to 145160621 144 + snRNA gene predicted gene, 25097
Gm15073 X 145227155 to 145227788 633 - pseudogene predicted gene 15073
Gm6441 X 145264831 to 145265526 695 - pseudogene predicted gene 6441
Lhfpl1 X 145290359 to 145349089 58730 - protein coding gene lipoma HMGIC fusion partner-like 1
Tssr164336 X 145348894 to 145348928 34 - TSS region transcription start site region 164336
Tssr164337 X 145348932 to 145348944 12 - TSS region transcription start site region 164337
Amot X 145446425 to 145505181 58756 - protein coding gene angiomotin
Tssr164338 X 145480616 to 145480625 9 - TSS region transcription start site region 164338
Tssr164339 X 145480642 to 145480657 15 - TSS region transcription start site region 164339
Tssr164340 X 145480664 to 145480673 9 - TSS region transcription start site region 164340
Tssr164341 X 145480676 to 145480681 5 - TSS region transcription start site region 164341
Tssr164342 X 145505136 to 145505159 23 - TSS region transcription start site region 164342
Tssr164343 X 145505165 to 145505172 7 - TSS region transcription start site region 164343
Tssr164344 X 145505175 to 145505212 37 - TSS region transcription start site region 164344
Tssr5698 X 145505230 to 145505232 2 - TSS region transcription start site region 5698
Gm5644 X 145601837 to 145602301 464 - pseudogene predicted gene 5644
Tssr164345 X 145602326 to 145602328 2 - TSS region transcription start site region 164345
Gm15060 X 145646506 to 145647453 947 + pseudogene predicted gene 15060
Gm27659 X 145666973 to 145667070 97 - snRNA gene predicted gene, 27659
Tssr162296 X 145729913 to 145729917 4 + TSS region transcription start site region 162296
Gm15058 X 145753499 to 145753956 457 - pseudogene predicted gene 15058
Gm6446 X 145833317 to 145834134 817 + pseudogene predicted gene 6446
Gm15057 X 145990742 to 145991275 533 + pseudogene predicted gene 15057
Gm6447 X 145994291 to 145995125 834 + pseudogene predicted gene 6447
Gm15062 X 146068808 to 146069174 366 + pseudogene predicted gene 15062
Gm4918 X 146095376 to 146096459 1083 + pseudogene predicted gene 4918
DXMit155 X 146119867 to 146119978 111 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 155
Hmgb1-ps2 X 146175942 to 146176577 635 + pseudogene high mobility group box 1, pseudogene 2
Gm18173 X 146177035 to 146242569 65534 - pseudogene predicted gene, 18173
Gm15061 X 146264949 to 146265977 1028 + pseudogene predicted gene 15061
Gm26151 X 146293776 to 146293835 59 - snRNA gene predicted gene, 26151
Tssr162297 X 146414223 to 146414224 1 + TSS region transcription start site region 162297
Gm15076 X 146519232 to 146519705 473 + pseudogene predicted gene 15076
Gm8261 X 146599751 to 146600958 1207 - pseudogene predicted gene 8261
Tssr162298 X 146610903 to 146610904 1 + TSS region transcription start site region 162298
Gm15075 X 146652038 to 146652514 476 - pseudogene predicted gene 15075
Gm15074 X 146654675 to 146655610 935 + pseudogene predicted gene 15074
Stpy X 146673077 to 159645105 12972028 heritable phenotypic marker stripey
DXMit34 X 146673077 to 146673327 250 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 34
Gm18174 X 146852607 to 146911187 58580 - pseudogene predicted gene, 18174
Gm4996 X 146933502 to 146934251 749 + pseudogene predicted gene 4996
Tssr162299 X 146962476 to 146962485 9 + TSS region transcription start site region 162299
Tssr162300 X 146962501 to 146962520 19 + TSS region transcription start site region 162300
Htr2c X 146962513 to 147197277 234764 + protein coding gene 5-hydroxytryptamine (serotonin) receptor 2C
Cpgi22982 X 146962662 to 146963226 564 CpG island CpG island 22982
Snora35 X 146994390 to 146994508 118 + snoRNA gene small nucleolar RNA, H/ACA box 35
Gm22650 X 146999405 to 146999509 104 + miRNA gene predicted gene, 22650
Mir764 X 147002259 to 147002366 107 + miRNA gene microRNA 764
Mir1912 X 147009441 to 147009527 86 + miRNA gene microRNA 1912
Mir1264 X 147010601 to 147010686 85 + miRNA gene microRNA 1264
Mir1298 X 147064905 to 147065002 97 + miRNA gene microRNA 1298
Gm24627 X 147106939 to 147107076 137 + miRNA gene predicted gene, 24627
1700094I16Rik X 147155432 to 147155984 552 unclassified gene RIKEN cDNA 1700094I16 gene
Mir448 X 147158210 to 147158321 111 + miRNA gene microRNA 448
Cpgi22983 X 147272740 to 147272966 226 CpG island CpG island 22983