Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:143093591-144222796

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rtl9 X 143099594 to 143104297 4703 + protein coding gene retrotransposon Gag like 9
Tssr164307 X 143183101 to 143183104 3 - TSS region transcription start site region 164307
Gm4760 X 143183508 to 143184537 1029 - pseudogene predicted gene 4760
DXMit35 X 143186238 to 143186395 157 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 35
Chrdl1 X 143285674 to 143394262 108588 - protein coding gene chordin-like 1
Tssr164308 X 143393850 to 143393861 11 - TSS region transcription start site region 164308
Tssr164309 X 143393878 to 143393891 13 - TSS region transcription start site region 164309
Cpgi22980 X 143393878 to 143394125 247 CpG island CpG island 22980
Tssr164310 X 143393893 to 143393922 29 - TSS region transcription start site region 164310
Gm23325 X 143413898 to 143414026 128 + snoRNA gene predicted gene, 23325
Tssr162256 X 143483006 to 143483015 9 + TSS region transcription start site region 162256
Tssr162257 X 143483029 to 143483057 28 + TSS region transcription start site region 162257
Tssr164311 X 143483043 to 143483052 9 - TSS region transcription start site region 164311
Tssr164312 X 143483062 to 143483122 60 - TSS region transcription start site region 164312
Tssr162258 X 143518400 to 143518414 14 + TSS region transcription start site region 162258
Tssr162259 X 143518513 to 143518528 15 + TSS region transcription start site region 162259
Tssr162260 X 143518539 to 143518556 17 + TSS region transcription start site region 162260
Tssr162261 X 143518562 to 143518574 12 + TSS region transcription start site region 162261
Tssr162262 X 143518576 to 143518599 23 + TSS region transcription start site region 162262
Pak3 X 143518591 to 143797796 279205 + protein coding gene p21 (RAC1) activated kinase 3
Tssr162263 X 143518671 to 143518703 32 + TSS region transcription start site region 162263
Tssr162264 X 143518706 to 143518717 11 + TSS region transcription start site region 162264
Tssr162265 X 143518726 to 143518737 11 + TSS region transcription start site region 162265
DXMit185 X 143621965 to 143622087 122 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 185
Tssr162266 X 143664333 to 143664354 21 + TSS region transcription start site region 162266
Tssr162267 X 143664357 to 143664362 5 + TSS region transcription start site region 162267
Tssr162268 X 143664365 to 143664399 34 + TSS region transcription start site region 162268
Tssr162269 X 143685049 to 143685073 24 + TSS region transcription start site region 162269
Tssr162270 X 143685077 to 143685085 8 + TSS region transcription start site region 162270
Tssr5697 X 143685092 to 143685100 8 + TSS region transcription start site region 5697
Tssr162271 X 143784232 to 143784235 3 + TSS region transcription start site region 162271
Tssr164313 X 143792498 to 143792501 3 - TSS region transcription start site region 164313
Capn6 X 143802236 to 143827412 25176 - protein coding gene calpain 6
Gm47298 X 143827223 to 143827344 121 - miRNA gene predicted gene, 47298
Tssr164314 X 143827306 to 143827367 61 - TSS region transcription start site region 164314
Tssr164315 X 143827378 to 143827386 8 - TSS region transcription start site region 164315
Tssr164316 X 143827391 to 143827402 11 - TSS region transcription start site region 164316
Dcx X 143855842 to 143933275 77433 - protein coding gene doublecortin
Tssr164317 X 143860396 to 143860408 12 - TSS region transcription start site region 164317
Tssr164318 X 143860934 to 143860973 39 - TSS region transcription start site region 164318
Tssr164319 X 143860974 to 143861006 32 - TSS region transcription start site region 164319
Tssr164320 X 143861089 to 143861100 11 - TSS region transcription start site region 164320
Tssr164321 X 143861149 to 143861160 11 - TSS region transcription start site region 164321
Tssr164322 X 143861172 to 143861182 10 - TSS region transcription start site region 164322
Tssr164323 X 143861244 to 143861254 10 - TSS region transcription start site region 164323
Tssr164324 X 143861281 to 143861321 40 - TSS region transcription start site region 164324
Tssr164325 X 143861338 to 143861352 14 - TSS region transcription start site region 164325
Tssr164326 X 143861441 to 143861453 12 - TSS region transcription start site region 164326
DXMit216 X 143902153 to 143902273 120 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 216
Cmv2 X 143902153 to 143902273 120 QTL cytomegalovirus resistance 2
DXDcr4 X 143902183 to 143902279 96 DNA segment DNA Segment, Chr X, Derry C. Roopenian 4
Tssr164327 X 143923221 to 143923234 13 - TSS region transcription start site region 164327
Tssr164328 X 143923423 to 143923432 9 - TSS region transcription start site region 164328
Tssr164329 X 143931433 to 143931469 36 - TSS region transcription start site region 164329
Tssr164330 X 143932997 to 143933008 11 - TSS region transcription start site region 164330
Tssr164331 X 143933023 to 143933055 32 - TSS region transcription start site region 164331
Tssr164332 X 143933089 to 143933142 53 - TSS region transcription start site region 164332
Tssr164333 X 143933144 to 143933151 7 - TSS region transcription start site region 164333
Tssr164334 X 143933178 to 143933196 18 - TSS region transcription start site region 164334
Tssr164335 X 143933213 to 143933224 11 - TSS region transcription start site region 164335
Gm33039 X 143942083 to 143949732 7649 - lncRNA gene predicted gene, 33039
Gm15048 X 144148494 to 144149135 641 + pseudogene predicted gene 15048
A730046J19Rik X 144153695 to 144166274 12579 + lincRNA gene RIKEN cDNA A730046J19 gene
Tssr162272 X 144153696 to 144153714 18 + TSS region transcription start site region 162272
Tssr162273 X 144153716 to 144153765 49 + TSS region transcription start site region 162273