Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:142377603-143547697

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acsl4 X 142317993 to 142390535 72542 - protein coding gene acyl-CoA synthetase long-chain family member 4
Tssr164292 X 142384777 to 142384781 4 - TSS region transcription start site region 164292
Cpgi22977 X 142390154 to 142390890 736 CpG island CpG island 22977
Tssr164293 X 142390334 to 142390345 11 - TSS region transcription start site region 164293
Tssr164294 X 142390360 to 142390363 3 - TSS region transcription start site region 164294
Tssr164295 X 142390394 to 142390428 34 - TSS region transcription start site region 164295
Tssr164296 X 142390434 to 142390446 12 - TSS region transcription start site region 164296
Tssr164297 X 142390491 to 142390520 29 - TSS region transcription start site region 164297
Tssr164298 X 142390574 to 142390581 7 - TSS region transcription start site region 164298
Tssr164299 X 142390603 to 142390614 11 - TSS region transcription start site region 164299
Tssr162237 X 142390718 to 142390731 13 + TSS region transcription start site region 162237
Gm6067 X 142405951 to 142406441 490 - pseudogene predicted gene 6067
Gm7123 X 142412755 to 142412967 212 + pseudogene predicted pseudogene 7123
Gm15031 X 142425327 to 142425536 209 + pseudogene predicted gene 15031
DXMit13.1 X 142462448 to 142462611 163 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 13.1
Tssr164300 X 142464314 to 142464320 6 - TSS region transcription start site region 164300
Gm25915 X 142485322 to 142485447 125 - snoRNA gene predicted gene, 25915
Gm4995 X 142533439 to 142533837 398 - pseudogene predicted pseudogene 4995
Gm15032 X 142622492 to 142622902 410 - pseudogene predicted gene 15032
Gm5763 X 142631193 to 142633136 1943 - pseudogene predicted pseudogene 5763
Tssr162238 X 142680810 to 142680841 31 + TSS region transcription start site region 162238
Cpgi22978 X 142681123 to 142682124 1001 CpG island CpG island 22978
Tssr162239 X 142681398 to 142681439 41 + TSS region transcription start site region 162239
Tmem164 X 142681406 to 142843494 162088 + protein coding gene transmembrane protein 164
Tssr162240 X 142681851 to 142681871 20 + TSS region transcription start site region 162240
Tssr162241 X 142681883 to 142681900 17 + TSS region transcription start site region 162241
Tssr162242 X 142687220 to 142687236 16 + TSS region transcription start site region 162242
Tssr5696 X 142692076 to 142692085 9 + TSS region transcription start site region 5696
6030487A22Rik X 142692261 to 142693567 1306 unclassified gene RIKEN cDNA 6030487A22 gene
Tssr162243 X 142694853 to 142694856 3 + TSS region transcription start site region 162243
Tssr162244 X 142708796 to 142708835 39 + TSS region transcription start site region 162244
Tssr162245 X 142720392 to 142720403 11 + TSS region transcription start site region 162245
Tssr162246 X 142720427 to 142720443 16 + TSS region transcription start site region 162246
Tssr162247 X 142736601 to 142736627 26 + TSS region transcription start site region 162247
Mir652 X 142739000 to 142739097 97 + miRNA gene microRNA 652
Tssr162248 X 142739080 to 142739082 2 + TSS region transcription start site region 162248
Gm15049 X 142775885 to 142776347 462 - pseudogene predicted gene 15049
Tssr162249 X 142783205 to 142783211 6 + TSS region transcription start site region 162249
DXMit181 X 142821106 to 142821255 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 181
Tssr162250 X 142825621 to 142825657 36 + TSS region transcription start site region 162250
Tssr162251 X 142825667 to 142825690 23 + TSS region transcription start site region 162251
Tssr162252 X 142825698 to 142825716 18 + TSS region transcription start site region 162252
Tssr162253 X 142832496 to 142832517 21 + TSS region transcription start site region 162253
Tssr162254 X 142832520 to 142832548 28 + TSS region transcription start site region 162254
Tssr164301 X 142852512 to 142852516 4 - TSS region transcription start site region 164301
Tssr164302 X 142852595 to 142852609 14 - TSS region transcription start site region 164302
Ammecr1 X 142853474 to 142966728 113254 - protein coding gene Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
Gm44351 X 142962603 to 142962697 94 - miRNA gene predicted gene, 44351
Cpgi22979 X 142965799 to 142967204 1405 CpG island CpG island 22979
Tssr164303 X 142966665 to 142966675 10 - TSS region transcription start site region 164303
Tssr164304 X 142966709 to 142966734 25 - TSS region transcription start site region 164304
Tssr164305 X 142966745 to 142966762 17 - TSS region transcription start site region 164305
Tssr164306 X 142966781 to 142966790 9 - TSS region transcription start site region 164306
Tssr162255 X 143059106 to 143059115 9 + TSS region transcription start site region 162255
Rtl9 X 143099594 to 143104297 4703 + protein coding gene retrotransposon Gag like 9
Tssr164307 X 143183101 to 143183104 3 - TSS region transcription start site region 164307
Gm4760 X 143183508 to 143184537 1029 - pseudogene predicted gene 4760
DXMit35 X 143186238 to 143186395 157 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 35
Chrdl1 X 143285674 to 143394262 108588 - protein coding gene chordin-like 1
Tssr164308 X 143393850 to 143393861 11 - TSS region transcription start site region 164308
Tssr164309 X 143393878 to 143393891 13 - TSS region transcription start site region 164309
Cpgi22980 X 143393878 to 143394125 247 CpG island CpG island 22980
Tssr164310 X 143393893 to 143393922 29 - TSS region transcription start site region 164310
Gm23325 X 143413898 to 143414026 128 + snoRNA gene predicted gene, 23325
Tssr162256 X 143483006 to 143483015 9 + TSS region transcription start site region 162256
Tssr162257 X 143483029 to 143483057 28 + TSS region transcription start site region 162257
Tssr164311 X 143483043 to 143483052 9 - TSS region transcription start site region 164311
Tssr164312 X 143483062 to 143483122 60 - TSS region transcription start site region 164312
Tssr162258 X 143518400 to 143518414 14 + TSS region transcription start site region 162258
Tssr162259 X 143518513 to 143518528 15 + TSS region transcription start site region 162259
Tssr162260 X 143518539 to 143518556 17 + TSS region transcription start site region 162260
Tssr162261 X 143518562 to 143518574 12 + TSS region transcription start site region 162261
Tssr162262 X 143518576 to 143518599 23 + TSS region transcription start site region 162262
Pak3 X 143518591 to 143797796 279205 + protein coding gene p21 (RAC1) activated kinase 3
Tssr162263 X 143518671 to 143518703 32 + TSS region transcription start site region 162263
Tssr162264 X 143518706 to 143518717 11 + TSS region transcription start site region 162264
Tssr162265 X 143518726 to 143518737 11 + TSS region transcription start site region 162265