Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:142059446-146572677

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229 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
DXMit234 X 142059365 to 142059477 112 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 234
Tssr162231 X 142060784 to 142060799 15 + TSS region transcription start site region 162231
Gm6373 X 142060855 to 142061214 359 + pseudogene predicted gene 6373
Gucy2f X 142081160 to 142196931 115771 - protein coding gene guanylate cyclase 2f
DXMit240 X 142179416 to 142179565 149 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-240
Tssr164273 X 142196917 to 142196924 7 - TSS region transcription start site region 164273
Tssr164274 X 142196944 to 142196949 5 - TSS region transcription start site region 164274
Tssr164275 X 142196954 to 142196960 6 - TSS region transcription start site region 164275
Tssr164276 X 142196961 to 142196982 21 - TSS region transcription start site region 164276
Tssr164277 X 142196996 to 142197001 5 - TSS region transcription start site region 164277
Gm6382 X 142210884 to 142211825 941 + pseudogene predicted gene 6382
Gm15014 X 142216471 to 142216728 257 + pseudogene predicted gene 15014
Tssr162232 X 142226765 to 142226806 41 + TSS region transcription start site region 162232
Nxt2 X 142226770 to 142239692 12922 + protein coding gene nuclear transport factor 2-like export factor 2
Tssr162233 X 142227923 to 142227951 28 + TSS region transcription start site region 162233
Tssr162234 X 142228182 to 142228250 68 + TSS region transcription start site region 162234
Tssr162235 X 142228284 to 142228306 22 + TSS region transcription start site region 162235
Tssr162236 X 142228699 to 142228714 15 + TSS region transcription start site region 162236
Tssr5695 X 142297502 to 142297504 2 + TSS region transcription start site region 5695
Gm5643 X 142297565 to 142298530 965 + pseudogene predicted gene 5643
Kcne1l X 142304753 to 142306198 1445 - protein coding gene potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene
Cpgi22976 X 142305588 to 142306064 476 CpG island CpG island 22976
Tssr164278 X 142306170 to 142306187 17 - TSS region transcription start site region 164278
Acsl4 X 142317993 to 142390535 72542 - protein coding gene acyl-CoA synthetase long-chain family member 4
Tssr164279 X 142318656 to 142318673 17 - TSS region transcription start site region 164279
Tssr164280 X 142318875 to 142318879 4 - TSS region transcription start site region 164280
Tssr164281 X 142320316 to 142320337 21 - TSS region transcription start site region 164281
Tssr164282 X 142323951 to 142323958 7 - TSS region transcription start site region 164282
Tssr164283 X 142326768 to 142326771 3 - TSS region transcription start site region 164283
Tssr164284 X 142328032 to 142328047 15 - TSS region transcription start site region 164284
Tssr164285 X 142328054 to 142328066 12 - TSS region transcription start site region 164285
Tssr164286 X 142338917 to 142338932 15 - TSS region transcription start site region 164286
Tssr164287 X 142338983 to 142338999 16 - TSS region transcription start site region 164287
Tssr164288 X 142346941 to 142346981 40 - TSS region transcription start site region 164288
Tssr164289 X 142358329 to 142358346 17 - TSS region transcription start site region 164289
Tssr164290 X 142366508 to 142366512 4 - TSS region transcription start site region 164290
Tssr164291 X 142369234 to 142369237 3 - TSS region transcription start site region 164291
Tssr164292 X 142384777 to 142384781 4 - TSS region transcription start site region 164292
Cpgi22977 X 142390154 to 142390890 736 CpG island CpG island 22977
Tssr164293 X 142390334 to 142390345 11 - TSS region transcription start site region 164293
Tssr164294 X 142390360 to 142390363 3 - TSS region transcription start site region 164294
Tssr164295 X 142390394 to 142390428 34 - TSS region transcription start site region 164295
Tssr164296 X 142390434 to 142390446 12 - TSS region transcription start site region 164296
Tssr164297 X 142390491 to 142390520 29 - TSS region transcription start site region 164297
Tssr164298 X 142390574 to 142390581 7 - TSS region transcription start site region 164298
Tssr164299 X 142390603 to 142390614 11 - TSS region transcription start site region 164299
Tssr162237 X 142390718 to 142390731 13 + TSS region transcription start site region 162237
Gm6067 X 142405951 to 142406441 490 - pseudogene predicted gene 6067
Gm7123 X 142412755 to 142412967 212 + pseudogene predicted pseudogene 7123
Gm15031 X 142425327 to 142425536 209 + pseudogene predicted gene 15031
DXMit13.1 X 142462448 to 142462611 163 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 13.1
Tssr164300 X 142464314 to 142464320 6 - TSS region transcription start site region 164300
Gm25915 X 142485322 to 142485447 125 - snoRNA gene predicted gene, 25915
Gm4995 X 142533439 to 142533837 398 - pseudogene predicted pseudogene 4995
Gm15032 X 142622492 to 142622902 410 - pseudogene predicted gene 15032
Gm5763 X 142631193 to 142633136 1943 - pseudogene predicted pseudogene 5763
Tssr162238 X 142680810 to 142680841 31 + TSS region transcription start site region 162238
Cpgi22978 X 142681123 to 142682124 1001 CpG island CpG island 22978
Tssr162239 X 142681398 to 142681439 41 + TSS region transcription start site region 162239
Tmem164 X 142681406 to 142843494 162088 + protein coding gene transmembrane protein 164
Tssr162240 X 142681851 to 142681871 20 + TSS region transcription start site region 162240
Tssr162241 X 142681883 to 142681900 17 + TSS region transcription start site region 162241
Tssr162242 X 142687220 to 142687236 16 + TSS region transcription start site region 162242
Tssr5696 X 142692076 to 142692085 9 + TSS region transcription start site region 5696
6030487A22Rik X 142692261 to 142693567 1306 unclassified gene RIKEN cDNA 6030487A22 gene
Tssr162243 X 142694853 to 142694856 3 + TSS region transcription start site region 162243
Tssr162244 X 142708796 to 142708835 39 + TSS region transcription start site region 162244
Tssr162245 X 142720392 to 142720403 11 + TSS region transcription start site region 162245
Tssr162246 X 142720427 to 142720443 16 + TSS region transcription start site region 162246
Tssr162247 X 142736601 to 142736627 26 + TSS region transcription start site region 162247
Mir652 X 142739000 to 142739097 97 + miRNA gene microRNA 652
Tssr162248 X 142739080 to 142739082 2 + TSS region transcription start site region 162248
Gm15049 X 142775885 to 142776347 462 - pseudogene predicted gene 15049
Tssr162249 X 142783205 to 142783211 6 + TSS region transcription start site region 162249
DXMit181 X 142821106 to 142821255 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 181
Tssr162250 X 142825621 to 142825657 36 + TSS region transcription start site region 162250
Tssr162251 X 142825667 to 142825690 23 + TSS region transcription start site region 162251
Tssr162252 X 142825698 to 142825716 18 + TSS region transcription start site region 162252
Tssr162253 X 142832496 to 142832517 21 + TSS region transcription start site region 162253
Tssr162254 X 142832520 to 142832548 28 + TSS region transcription start site region 162254
Tssr164301 X 142852512 to 142852516 4 - TSS region transcription start site region 164301
Tssr164302 X 142852595 to 142852609 14 - TSS region transcription start site region 164302
Ammecr1 X 142853474 to 142966728 113254 - protein coding gene Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
Gm44351 X 142962603 to 142962697 94 - miRNA gene predicted gene, 44351
Cpgi22979 X 142965799 to 142967204 1405 CpG island CpG island 22979
Tssr164303 X 142966665 to 142966675 10 - TSS region transcription start site region 164303
Tssr164304 X 142966709 to 142966734 25 - TSS region transcription start site region 164304
Tssr164305 X 142966745 to 142966762 17 - TSS region transcription start site region 164305
Tssr164306 X 142966781 to 142966790 9 - TSS region transcription start site region 164306
Tssr162255 X 143059106 to 143059115 9 + TSS region transcription start site region 162255
Rtl9 X 143099594 to 143104297 4703 + protein coding gene retrotransposon Gag like 9
Tssr164307 X 143183101 to 143183104 3 - TSS region transcription start site region 164307
Gm4760 X 143183508 to 143184537 1029 - pseudogene predicted gene 4760
DXMit35 X 143186238 to 143186395 157 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 35
Chrdl1 X 143285674 to 143394262 108588 - protein coding gene chordin-like 1
Tssr164308 X 143393850 to 143393861 11 - TSS region transcription start site region 164308
Tssr164309 X 143393878 to 143393891 13 - TSS region transcription start site region 164309
Cpgi22980 X 143393878 to 143394125 247 CpG island CpG island 22980
Tssr164310 X 143393893 to 143393922 29 - TSS region transcription start site region 164310
Gm23325 X 143413898 to 143414026 128 + snoRNA gene predicted gene, 23325
Tssr162256 X 143483006 to 143483015 9 + TSS region transcription start site region 162256
Tssr162257 X 143483029 to 143483057 28 + TSS region transcription start site region 162257
Tssr164311 X 143483043 to 143483052 9 - TSS region transcription start site region 164311
Tssr164312 X 143483062 to 143483122 60 - TSS region transcription start site region 164312
Tssr162258 X 143518400 to 143518414 14 + TSS region transcription start site region 162258
Tssr162259 X 143518513 to 143518528 15 + TSS region transcription start site region 162259
Tssr162260 X 143518539 to 143518556 17 + TSS region transcription start site region 162260
Tssr162261 X 143518562 to 143518574 12 + TSS region transcription start site region 162261
Tssr162262 X 143518576 to 143518599 23 + TSS region transcription start site region 162262
Pak3 X 143518591 to 143797796 279205 + protein coding gene p21 (RAC1) activated kinase 3
Tssr162263 X 143518671 to 143518703 32 + TSS region transcription start site region 162263
Tssr162264 X 143518706 to 143518717 11 + TSS region transcription start site region 162264
Tssr162265 X 143518726 to 143518737 11 + TSS region transcription start site region 162265
DXMit185 X 143621965 to 143622087 122 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 185
Tssr162266 X 143664333 to 143664354 21 + TSS region transcription start site region 162266
Tssr162267 X 143664357 to 143664362 5 + TSS region transcription start site region 162267
Tssr162268 X 143664365 to 143664399 34 + TSS region transcription start site region 162268
Tssr162269 X 143685049 to 143685073 24 + TSS region transcription start site region 162269
Tssr162270 X 143685077 to 143685085 8 + TSS region transcription start site region 162270
Tssr5697 X 143685092 to 143685100 8 + TSS region transcription start site region 5697
Tssr162271 X 143784232 to 143784235 3 + TSS region transcription start site region 162271
Tssr164313 X 143792498 to 143792501 3 - TSS region transcription start site region 164313
Capn6 X 143802236 to 143827412 25176 - protein coding gene calpain 6
Gm47298 X 143827223 to 143827344 121 - miRNA gene predicted gene, 47298
Tssr164314 X 143827306 to 143827367 61 - TSS region transcription start site region 164314
Tssr164315 X 143827378 to 143827386 8 - TSS region transcription start site region 164315
Tssr164316 X 143827391 to 143827402 11 - TSS region transcription start site region 164316
Dcx X 143855842 to 143933275 77433 - protein coding gene doublecortin
Tssr164317 X 143860396 to 143860408 12 - TSS region transcription start site region 164317
Tssr164318 X 143860934 to 143860973 39 - TSS region transcription start site region 164318
Tssr164319 X 143860974 to 143861006 32 - TSS region transcription start site region 164319
Tssr164320 X 143861089 to 143861100 11 - TSS region transcription start site region 164320
Tssr164321 X 143861149 to 143861160 11 - TSS region transcription start site region 164321
Tssr164322 X 143861172 to 143861182 10 - TSS region transcription start site region 164322
Tssr164323 X 143861244 to 143861254 10 - TSS region transcription start site region 164323
Tssr164324 X 143861281 to 143861321 40 - TSS region transcription start site region 164324
Tssr164325 X 143861338 to 143861352 14 - TSS region transcription start site region 164325
Tssr164326 X 143861441 to 143861453 12 - TSS region transcription start site region 164326
DXMit216 X 143902153 to 143902273 120 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 216
Cmv2 X 143902153 to 143902273 120 QTL cytomegalovirus resistance 2
DXDcr4 X 143902183 to 143902279 96 DNA segment DNA Segment, Chr X, Derry C. Roopenian 4
Tssr164327 X 143923221 to 143923234 13 - TSS region transcription start site region 164327
Tssr164328 X 143923423 to 143923432 9 - TSS region transcription start site region 164328
Tssr164329 X 143931433 to 143931469 36 - TSS region transcription start site region 164329
Tssr164330 X 143932997 to 143933008 11 - TSS region transcription start site region 164330
Tssr164331 X 143933023 to 143933055 32 - TSS region transcription start site region 164331
Tssr164332 X 143933089 to 143933142 53 - TSS region transcription start site region 164332
Tssr164333 X 143933144 to 143933151 7 - TSS region transcription start site region 164333
Tssr164334 X 143933178 to 143933196 18 - TSS region transcription start site region 164334
Tssr164335 X 143933213 to 143933224 11 - TSS region transcription start site region 164335
Gm33039 X 143942083 to 143949732 7649 - lncRNA gene predicted gene, 33039
Gm15048 X 144148494 to 144149135 641 + pseudogene predicted gene 15048
A730046J19Rik X 144153695 to 144166274 12579 + lincRNA gene RIKEN cDNA A730046J19 gene
Tssr162272 X 144153696 to 144153714 18 + TSS region transcription start site region 162272
Tssr162273 X 144153716 to 144153765 49 + TSS region transcription start site region 162273
Gm8199 X 144232766 to 144233581 815 - pseudogene predicted gene 8199
Gm8202 X 144236903 to 144237212 309 - pseudogene predicted gene 8202
Gm15067 X 144268049 to 144268204 155 - pseudogene predicted gene 15067
Gm15066 X 144285726 to 144288333 2607 - pseudogene predicted gene 15066
Mir680-2 X 144297790 to 144297899 109 + miRNA gene microRNA 680-2
Gm33235 X 144314446 to 144317677 3231 - lncRNA gene predicted gene, 33235
Cpgi22981 X 144317788 to 144319175 1387 CpG island CpG island 22981
Tssr162274 X 144317799 to 144317801 2 + TSS region transcription start site region 162274
Alg13 X 144317966 to 144374450 56484 + protein coding gene asparagine-linked glycosylation 13
Tssr162275 X 144317991 to 144318034 43 + TSS region transcription start site region 162275
Tssr162276 X 144318038 to 144318056 18 + TSS region transcription start site region 162276
Tssr162277 X 144318065 to 144318080 15 + TSS region transcription start site region 162277
Gm2214 X 144320926 to 144321255 329 - pseudogene predicted gene 2214
Tssr162278 X 144335787 to 144335831 44 + TSS region transcription start site region 162278
Tssr162279 X 144335903 to 144335927 24 + TSS region transcription start site region 162279
Tssr162280 X 144335936 to 144335999 63 + TSS region transcription start site region 162280
Tssr162281 X 144336016 to 144336023 7 + TSS region transcription start site region 162281
Tssr162282 X 144336047 to 144336054 7 + TSS region transcription start site region 162282
Tssr162283 X 144336065 to 144336076 11 + TSS region transcription start site region 162283
Tssr162284 X 144336079 to 144336092 13 + TSS region transcription start site region 162284
Tssr162285 X 144336095 to 144336108 13 + TSS region transcription start site region 162285
Tssr162286 X 144336124 to 144336138 14 + TSS region transcription start site region 162286
Tssr162287 X 144336147 to 144336150 3 + TSS region transcription start site region 162287
Tssr162288 X 144336164 to 144336169 5 + TSS region transcription start site region 162288
Tssr162289 X 144336188 to 144336197 9 + TSS region transcription start site region 162289
Tssr162290 X 144336212 to 144336229 17 + TSS region transcription start site region 162290
Tssr162291 X 144336694 to 144336697 3 + TSS region transcription start site region 162291
Tssr162292 X 144352686 to 144352697 11 + TSS region transcription start site region 162292
Tssr162293 X 144364049 to 144364073 24 + TSS region transcription start site region 162293
Trpc5 X 144381671 to 144688180 306509 - protein coding gene transient receptor potential cation channel, subfamily C, member 5
Tssr162294 X 144455916 to 144455924 8 + TSS region transcription start site region 162294
Tssr162295 X 144455950 to 144455961 11 + TSS region transcription start site region 162295
Trpc5os X 144456581 to 144477066 20485 + protein coding gene transient receptor potential cation channel, subfamily C, member 5, opposite strand
Gm15071 X 144499348 to 144500441 1093 + pseudogene predicted gene 15071
Mageb16-ps1 X 144555211 to 144556337 1126 - pseudogene melanoma antigen family B, 16, pseudogene 1
DXMit118 X 144632777 to 144632910 133 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 118
Rtl4 X 144688907 to 145122411 433504 + protein coding gene retrotransposon Gag like 4
Gm41903 X 144777680 to 144829176 51496 - pseudogene predicted gene, 41903
Gm26024 X 144820187 to 144820508 321 + unclassified non-coding RNA gene predicted gene, 26024
Gm8216 X 144847683 to 144848277 594 + pseudogene predicted gene 8216
Mir3472 X 145039344 to 145039414 70 + miRNA gene microRNA 3472
Gm25097 X 145160477 to 145160621 144 + snRNA gene predicted gene, 25097
Gm15073 X 145227155 to 145227788 633 - pseudogene predicted gene 15073
Gm6441 X 145264831 to 145265526 695 - pseudogene predicted gene 6441
Lhfpl1 X 145290359 to 145349089 58730 - protein coding gene lipoma HMGIC fusion partner-like 1