Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:140988880-141958894

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atg4a X 140956907 to 141164270 207363 + protein coding gene autophagy related 4A, cysteine peptidase
Tssr162224 X 140998305 to 140998316 11 + TSS region transcription start site region 162224
Tssr5691 X 140998786 to 140998805 19 + TSS region transcription start site region 5691
Tssr162225 X 141150493 to 141150504 11 + TSS region transcription start site region 162225
Col4a6 X 141165403 to 141474076 308673 - protein coding gene collagen, type IV, alpha 6
Gm39539 X 141182900 to 141188927 6027 + lncRNA gene predicted gene, 39539
Tssr164263 X 141207547 to 141207550 3 - TSS region transcription start site region 164263
Tssr164264 X 141207581 to 141207589 8 - TSS region transcription start site region 164264
Tssr164265 X 141207592 to 141207608 16 - TSS region transcription start site region 164265
Tssr164266 X 141207621 to 141207629 8 - TSS region transcription start site region 164266
Tssr164267 X 141208998 to 141209048 50 - TSS region transcription start site region 164267
Gm15077 X 141302349 to 141302710 361 - pseudogene predicted gene 15077
Gm15078 X 141356178 to 141356956 778 + pseudogene predicted gene 15078
Gm15079 X 141434973 to 141435188 215 + pseudogene predicted gene 15079
Tssr5692 X 141437846 to 141437848 2 + TSS region transcription start site region 5692
DXMit67 X 141442969 to 141443140 171 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 67
Tssr164268 X 141473853 to 141473858 5 - TSS region transcription start site region 164268
Tssr164269 X 141473880 to 141473894 14 - TSS region transcription start site region 164269
Tssr164270 X 141474034 to 141474091 57 - TSS region transcription start site region 164270
Tssr162226 X 141475385 to 141475468 83 + TSS region transcription start site region 162226
Col4a5 X 141475385 to 141689234 213849 + protein coding gene collagen, type IV, alpha 5
Tssr162227 X 141475600 to 141475612 12 + TSS region transcription start site region 162227
Tssr5693 X 141627897 to 141627903 6 + TSS region transcription start site region 5693
Gm15268 X 141627959 to 141628468 509 + pseudogene predicted gene 15268
Gm15282 X 141680442 to 141680741 299 - pseudogene predicted gene 15282
Irs4 X 141710998 to 141725217 14219 - protein coding gene insulin receptor substrate 4
Cpgi22974 X 141721603 to 141722091 488 CpG island CpG island 22974
Cpgi22975 X 141724049 to 141725141 1092 CpG island CpG island 22975
Gm15295 X 141724838 to 141726163 1325 + antisense lncRNA gene predicted gene 15295
Tssr164271 X 141725181 to 141725195 14 - TSS region transcription start site region 164271
DXMit132 X 141756814 to 141756928 114 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 132
Gm15297 X 141777180 to 141777662 482 + pseudogene predicted gene 15297
Hmgn2l6 X 141870135 to 141870401 266 - pseudogene high-mobility group nucleosomal binding domain 2-like 6
Tssr164272 X 141870494 to 141870503 9 - TSS region transcription start site region 164272
Gm15294 X 141873409 to 141875235 1826 - pseudogene predicted gene 15294
Gm15298 X 141900582 to 141902455 1873 - lincRNA gene predicted gene 15298