Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:140985998-142450217

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atg4a X 140956907 to 141164270 207363 + protein coding gene autophagy related 4A, cysteine peptidase
Tssr162224 X 140998305 to 140998316 11 + TSS region transcription start site region 162224
Tssr5691 X 140998786 to 140998805 19 + TSS region transcription start site region 5691
Tssr162225 X 141150493 to 141150504 11 + TSS region transcription start site region 162225
Col4a6 X 141165403 to 141474076 308673 - protein coding gene collagen, type IV, alpha 6
Gm39539 X 141182900 to 141188927 6027 + lncRNA gene predicted gene, 39539
Tssr164263 X 141207547 to 141207550 3 - TSS region transcription start site region 164263
Tssr164264 X 141207581 to 141207589 8 - TSS region transcription start site region 164264
Tssr164265 X 141207592 to 141207608 16 - TSS region transcription start site region 164265
Tssr164266 X 141207621 to 141207629 8 - TSS region transcription start site region 164266
Tssr164267 X 141208998 to 141209048 50 - TSS region transcription start site region 164267
Gm15077 X 141302349 to 141302710 361 - pseudogene predicted gene 15077
Gm15078 X 141356178 to 141356956 778 + pseudogene predicted gene 15078
Gm15079 X 141434973 to 141435188 215 + pseudogene predicted gene 15079
Tssr5692 X 141437846 to 141437848 2 + TSS region transcription start site region 5692
DXMit67 X 141442969 to 141443140 171 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 67
Tssr164268 X 141473853 to 141473858 5 - TSS region transcription start site region 164268
Tssr164269 X 141473880 to 141473894 14 - TSS region transcription start site region 164269
Tssr164270 X 141474034 to 141474091 57 - TSS region transcription start site region 164270
Col4a5 X 141475385 to 141689234 213849 + protein coding gene collagen, type IV, alpha 5
Tssr162226 X 141475385 to 141475468 83 + TSS region transcription start site region 162226
Tssr162227 X 141475600 to 141475612 12 + TSS region transcription start site region 162227
Tssr5693 X 141627897 to 141627903 6 + TSS region transcription start site region 5693
Gm15268 X 141627959 to 141628468 509 + pseudogene predicted gene 15268
Gm15282 X 141680442 to 141680741 299 - pseudogene predicted gene 15282
Irs4 X 141710998 to 141725217 14219 - protein coding gene insulin receptor substrate 4
Cpgi22974 X 141721603 to 141722091 488 CpG island CpG island 22974
Cpgi22975 X 141724049 to 141725141 1092 CpG island CpG island 22975
Gm15295 X 141724838 to 141726163 1325 + antisense lncRNA gene predicted gene 15295
Tssr164271 X 141725181 to 141725195 14 - TSS region transcription start site region 164271
DXMit132 X 141756814 to 141756928 114 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 132
Gm15297 X 141777180 to 141777662 482 + pseudogene predicted gene 15297
Hmgn2l6 X 141870135 to 141870401 266 - pseudogene high-mobility group nucleosomal binding domain 2-like 6
Tssr164272 X 141870494 to 141870503 9 - TSS region transcription start site region 164272
Gm15294 X 141873409 to 141875235 1826 - pseudogene predicted gene 15294
Gm15298 X 141900582 to 141902455 1873 - lincRNA gene predicted gene 15298
Tssr162228 X 141980071 to 141980080 9 + TSS region transcription start site region 162228
Gm6368 X 141980175 to 141982321 2146 + pseudogene predicted gene 6368
Tssr162229 X 141980280 to 141980306 26 + TSS region transcription start site region 162229
Tssr5694 X 141980772 to 141980793 21 + TSS region transcription start site region 5694
Tssr162230 X 141981578 to 141981597 19 + TSS region transcription start site region 162230
Gm5762 X 142023346 to 142023603 257 - pseudogene predicted gene 5762
DXMit234 X 142059365 to 142059477 112 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 234
Tssr162231 X 142060784 to 142060799 15 + TSS region transcription start site region 162231
Gm6373 X 142060855 to 142061214 359 + pseudogene predicted gene 6373
Gucy2f X 142081160 to 142196931 115771 - protein coding gene guanylate cyclase 2f
DXMit240 X 142179416 to 142179565 149 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-240
Tssr164273 X 142196917 to 142196924 7 - TSS region transcription start site region 164273
Tssr164274 X 142196944 to 142196949 5 - TSS region transcription start site region 164274
Tssr164275 X 142196954 to 142196960 6 - TSS region transcription start site region 164275
Tssr164276 X 142196961 to 142196982 21 - TSS region transcription start site region 164276
Tssr164277 X 142196996 to 142197001 5 - TSS region transcription start site region 164277
Gm6382 X 142210884 to 142211825 941 + pseudogene predicted gene 6382
Gm15014 X 142216471 to 142216728 257 + pseudogene predicted gene 15014
Tssr162232 X 142226765 to 142226806 41 + TSS region transcription start site region 162232
Nxt2 X 142226770 to 142239692 12922 + protein coding gene nuclear transport factor 2-like export factor 2
Tssr162233 X 142227923 to 142227951 28 + TSS region transcription start site region 162233
Tssr162234 X 142228182 to 142228250 68 + TSS region transcription start site region 162234
Tssr162235 X 142228284 to 142228306 22 + TSS region transcription start site region 162235
Tssr162236 X 142228699 to 142228714 15 + TSS region transcription start site region 162236
Tssr5695 X 142297502 to 142297504 2 + TSS region transcription start site region 5695
Gm5643 X 142297565 to 142298530 965 + pseudogene predicted gene 5643
Kcne1l X 142304753 to 142306198 1445 - protein coding gene potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene
Cpgi22976 X 142305588 to 142306064 476 CpG island CpG island 22976
Tssr164278 X 142306170 to 142306187 17 - TSS region transcription start site region 164278
Acsl4 X 142317993 to 142390535 72542 - protein coding gene acyl-CoA synthetase long-chain family member 4
Tssr164279 X 142318656 to 142318673 17 - TSS region transcription start site region 164279
Tssr164280 X 142318875 to 142318879 4 - TSS region transcription start site region 164280
Tssr164281 X 142320316 to 142320337 21 - TSS region transcription start site region 164281
Tssr164282 X 142323951 to 142323958 7 - TSS region transcription start site region 164282
Tssr164283 X 142326768 to 142326771 3 - TSS region transcription start site region 164283
Tssr164284 X 142328032 to 142328047 15 - TSS region transcription start site region 164284
Tssr164285 X 142328054 to 142328066 12 - TSS region transcription start site region 164285
Tssr164286 X 142338917 to 142338932 15 - TSS region transcription start site region 164286
Tssr164287 X 142338983 to 142338999 16 - TSS region transcription start site region 164287
Tssr164288 X 142346941 to 142346981 40 - TSS region transcription start site region 164288
Tssr164289 X 142358329 to 142358346 17 - TSS region transcription start site region 164289
Tssr164290 X 142366508 to 142366512 4 - TSS region transcription start site region 164290
Tssr164291 X 142369234 to 142369237 3 - TSS region transcription start site region 164291
Tssr164292 X 142384777 to 142384781 4 - TSS region transcription start site region 164292
Cpgi22977 X 142390154 to 142390890 736 CpG island CpG island 22977
Tssr164293 X 142390334 to 142390345 11 - TSS region transcription start site region 164293
Tssr164294 X 142390360 to 142390363 3 - TSS region transcription start site region 164294
Tssr164295 X 142390394 to 142390428 34 - TSS region transcription start site region 164295
Tssr164296 X 142390434 to 142390446 12 - TSS region transcription start site region 164296
Tssr164297 X 142390491 to 142390520 29 - TSS region transcription start site region 164297
Tssr164298 X 142390574 to 142390581 7 - TSS region transcription start site region 164298
Tssr164299 X 142390603 to 142390614 11 - TSS region transcription start site region 164299
Tssr162237 X 142390718 to 142390731 13 + TSS region transcription start site region 162237
Gm6067 X 142405951 to 142406441 490 - pseudogene predicted gene 6067
Gm7123 X 142412755 to 142412967 212 + pseudogene predicted pseudogene 7123
Gm15031 X 142425327 to 142425536 209 + pseudogene predicted gene 15031