Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:140772512-144932516

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262 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eif2c5 X 140776288 to 140796880 20592 + unclassified gene eukaryotic translation initiation factor 2C, 5
Tssr162211 X 140797302 to 140797314 12 + TSS region transcription start site region 162211
Gm6088 X 140797396 to 140799934 2538 + pseudogene predicted gene 6088
Tex13b X 140808307 to 140813433 5126 - protein coding gene testis expressed 13B
Tssr164258 X 140813462 to 140813467 5 - TSS region transcription start site region 164258
Gm7091 X 140821936 to 140822521 585 - pseudogene predicted gene 7091
Tssr164259 X 140822555 to 140822575 20 - TSS region transcription start site region 164259
Tssr162212 X 140907511 to 140907533 22 + TSS region transcription start site region 162212
Tssr162213 X 140907554 to 140907557 3 + TSS region transcription start site region 162213
Tssr162214 X 140907602 to 140907635 33 + TSS region transcription start site region 162214
Vsig1 X 140907608 to 140939472 31864 + protein coding gene V-set and immunoglobulin domain containing 1
Tssr162215 X 140923168 to 140923171 3 + TSS region transcription start site region 162215
Tssr162216 X 140923178 to 140923181 3 + TSS region transcription start site region 162216
Tssr162217 X 140923193 to 140923209 16 + TSS region transcription start site region 162217
Psmd10 X 140948425 to 140956711 8286 - protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
Tssr162218 X 140953832 to 140953862 30 + TSS region transcription start site region 162218
Tssr162219 X 140953871 to 140953906 35 + TSS region transcription start site region 162219
Tssr164260 X 140956644 to 140956657 13 - TSS region transcription start site region 164260
Tssr164261 X 140956666 to 140956673 7 - TSS region transcription start site region 164261
Tssr164262 X 140956675 to 140956717 42 - TSS region transcription start site region 164262
Tssr162220 X 140956892 to 140956923 31 + TSS region transcription start site region 162220
Atg4a X 140956907 to 141164270 207363 + protein coding gene autophagy related 4A, cysteine peptidase
Tssr5690 X 140956939 to 140956954 15 + TSS region transcription start site region 5690
Tssr162221 X 140957239 to 140957253 14 + TSS region transcription start site region 162221
Tssr162222 X 140979823 to 140979860 37 + TSS region transcription start site region 162222
Tssr162223 X 140979883 to 140979931 48 + TSS region transcription start site region 162223
Tssr162224 X 140998305 to 140998316 11 + TSS region transcription start site region 162224
Tssr5691 X 140998786 to 140998805 19 + TSS region transcription start site region 5691
Tssr162225 X 141150493 to 141150504 11 + TSS region transcription start site region 162225
Col4a6 X 141165403 to 141474076 308673 - protein coding gene collagen, type IV, alpha 6
Gm39539 X 141182900 to 141188927 6027 + lncRNA gene predicted gene, 39539
Tssr164263 X 141207547 to 141207550 3 - TSS region transcription start site region 164263
Tssr164264 X 141207581 to 141207589 8 - TSS region transcription start site region 164264
Tssr164265 X 141207592 to 141207608 16 - TSS region transcription start site region 164265
Tssr164266 X 141207621 to 141207629 8 - TSS region transcription start site region 164266
Tssr164267 X 141208998 to 141209048 50 - TSS region transcription start site region 164267
Gm15077 X 141302349 to 141302710 361 - pseudogene predicted gene 15077
Gm15078 X 141356178 to 141356956 778 + pseudogene predicted gene 15078
Gm15079 X 141434973 to 141435188 215 + pseudogene predicted gene 15079
Tssr5692 X 141437846 to 141437848 2 + TSS region transcription start site region 5692
DXMit67 X 141442969 to 141443140 171 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 67
Tssr164268 X 141473853 to 141473858 5 - TSS region transcription start site region 164268
Tssr164269 X 141473880 to 141473894 14 - TSS region transcription start site region 164269
Tssr164270 X 141474034 to 141474091 57 - TSS region transcription start site region 164270
Tssr162226 X 141475385 to 141475468 83 + TSS region transcription start site region 162226
Col4a5 X 141475385 to 141689234 213849 + protein coding gene collagen, type IV, alpha 5
Tssr162227 X 141475600 to 141475612 12 + TSS region transcription start site region 162227
Tssr5693 X 141627897 to 141627903 6 + TSS region transcription start site region 5693
Gm15268 X 141627959 to 141628468 509 + pseudogene predicted gene 15268
Gm15282 X 141680442 to 141680741 299 - pseudogene predicted gene 15282
Irs4 X 141710998 to 141725217 14219 - protein coding gene insulin receptor substrate 4
Cpgi22974 X 141721603 to 141722091 488 CpG island CpG island 22974
Cpgi22975 X 141724049 to 141725141 1092 CpG island CpG island 22975
Gm15295 X 141724838 to 141726163 1325 + antisense lncRNA gene predicted gene 15295
Tssr164271 X 141725181 to 141725195 14 - TSS region transcription start site region 164271
DXMit132 X 141756814 to 141756928 114 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 132
Gm15297 X 141777180 to 141777662 482 + pseudogene predicted gene 15297
Hmgn2l6 X 141870135 to 141870401 266 - pseudogene high-mobility group nucleosomal binding domain 2-like 6
Tssr164272 X 141870494 to 141870503 9 - TSS region transcription start site region 164272
Gm15294 X 141873409 to 141875235 1826 - pseudogene predicted gene 15294
Gm15298 X 141900582 to 141902455 1873 - lincRNA gene predicted gene 15298
Tssr162228 X 141980071 to 141980080 9 + TSS region transcription start site region 162228
Gm6368 X 141980175 to 141982321 2146 + pseudogene predicted gene 6368
Tssr162229 X 141980280 to 141980306 26 + TSS region transcription start site region 162229
Tssr5694 X 141980772 to 141980793 21 + TSS region transcription start site region 5694
Tssr162230 X 141981578 to 141981597 19 + TSS region transcription start site region 162230
Gm5762 X 142023346 to 142023603 257 - pseudogene predicted gene 5762
DXMit234 X 142059365 to 142059477 112 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 234
Tssr162231 X 142060784 to 142060799 15 + TSS region transcription start site region 162231
Gm6373 X 142060855 to 142061214 359 + pseudogene predicted gene 6373
Gucy2f X 142081160 to 142196931 115771 - protein coding gene guanylate cyclase 2f
DXMit240 X 142179416 to 142179565 149 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-240
Tssr164273 X 142196917 to 142196924 7 - TSS region transcription start site region 164273
Tssr164274 X 142196944 to 142196949 5 - TSS region transcription start site region 164274
Tssr164275 X 142196954 to 142196960 6 - TSS region transcription start site region 164275
Tssr164276 X 142196961 to 142196982 21 - TSS region transcription start site region 164276
Tssr164277 X 142196996 to 142197001 5 - TSS region transcription start site region 164277
Gm6382 X 142210884 to 142211825 941 + pseudogene predicted gene 6382
Gm15014 X 142216471 to 142216728 257 + pseudogene predicted gene 15014
Tssr162232 X 142226765 to 142226806 41 + TSS region transcription start site region 162232
Nxt2 X 142226770 to 142239692 12922 + protein coding gene nuclear transport factor 2-like export factor 2
Tssr162233 X 142227923 to 142227951 28 + TSS region transcription start site region 162233
Tssr162234 X 142228182 to 142228250 68 + TSS region transcription start site region 162234
Tssr162235 X 142228284 to 142228306 22 + TSS region transcription start site region 162235
Tssr162236 X 142228699 to 142228714 15 + TSS region transcription start site region 162236
Tssr5695 X 142297502 to 142297504 2 + TSS region transcription start site region 5695
Gm5643 X 142297565 to 142298530 965 + pseudogene predicted gene 5643
Kcne1l X 142304753 to 142306198 1445 - protein coding gene potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene
Cpgi22976 X 142305588 to 142306064 476 CpG island CpG island 22976
Tssr164278 X 142306170 to 142306187 17 - TSS region transcription start site region 164278
Acsl4 X 142317993 to 142390535 72542 - protein coding gene acyl-CoA synthetase long-chain family member 4
Tssr164279 X 142318656 to 142318673 17 - TSS region transcription start site region 164279
Tssr164280 X 142318875 to 142318879 4 - TSS region transcription start site region 164280
Tssr164281 X 142320316 to 142320337 21 - TSS region transcription start site region 164281
Tssr164282 X 142323951 to 142323958 7 - TSS region transcription start site region 164282
Tssr164283 X 142326768 to 142326771 3 - TSS region transcription start site region 164283
Tssr164284 X 142328032 to 142328047 15 - TSS region transcription start site region 164284
Tssr164285 X 142328054 to 142328066 12 - TSS region transcription start site region 164285
Tssr164286 X 142338917 to 142338932 15 - TSS region transcription start site region 164286
Tssr164287 X 142338983 to 142338999 16 - TSS region transcription start site region 164287
Tssr164288 X 142346941 to 142346981 40 - TSS region transcription start site region 164288
Tssr164289 X 142358329 to 142358346 17 - TSS region transcription start site region 164289
Tssr164290 X 142366508 to 142366512 4 - TSS region transcription start site region 164290
Tssr164291 X 142369234 to 142369237 3 - TSS region transcription start site region 164291
Tssr164292 X 142384777 to 142384781 4 - TSS region transcription start site region 164292
Cpgi22977 X 142390154 to 142390890 736 CpG island CpG island 22977
Tssr164293 X 142390334 to 142390345 11 - TSS region transcription start site region 164293
Tssr164294 X 142390360 to 142390363 3 - TSS region transcription start site region 164294
Tssr164295 X 142390394 to 142390428 34 - TSS region transcription start site region 164295
Tssr164296 X 142390434 to 142390446 12 - TSS region transcription start site region 164296
Tssr164297 X 142390491 to 142390520 29 - TSS region transcription start site region 164297
Tssr164298 X 142390574 to 142390581 7 - TSS region transcription start site region 164298
Tssr164299 X 142390603 to 142390614 11 - TSS region transcription start site region 164299
Tssr162237 X 142390718 to 142390731 13 + TSS region transcription start site region 162237
Gm6067 X 142405951 to 142406441 490 - pseudogene predicted gene 6067
Gm7123 X 142412755 to 142412967 212 + pseudogene predicted pseudogene 7123
Gm15031 X 142425327 to 142425536 209 + pseudogene predicted gene 15031
DXMit13.1 X 142462448 to 142462611 163 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 13.1
Tssr164300 X 142464314 to 142464320 6 - TSS region transcription start site region 164300
Gm25915 X 142485322 to 142485447 125 - snoRNA gene predicted gene, 25915
Gm4995 X 142533439 to 142533837 398 - pseudogene predicted pseudogene 4995
Gm15032 X 142622492 to 142622902 410 - pseudogene predicted gene 15032
Gm5763 X 142631193 to 142633136 1943 - pseudogene predicted pseudogene 5763
Tssr162238 X 142680810 to 142680841 31 + TSS region transcription start site region 162238
Cpgi22978 X 142681123 to 142682124 1001 CpG island CpG island 22978
Tssr162239 X 142681398 to 142681439 41 + TSS region transcription start site region 162239
Tmem164 X 142681406 to 142843494 162088 + protein coding gene transmembrane protein 164
Tssr162240 X 142681851 to 142681871 20 + TSS region transcription start site region 162240
Tssr162241 X 142681883 to 142681900 17 + TSS region transcription start site region 162241
Tssr162242 X 142687220 to 142687236 16 + TSS region transcription start site region 162242
Tssr5696 X 142692076 to 142692085 9 + TSS region transcription start site region 5696
6030487A22Rik X 142692261 to 142693567 1306 unclassified gene RIKEN cDNA 6030487A22 gene
Tssr162243 X 142694853 to 142694856 3 + TSS region transcription start site region 162243
Tssr162244 X 142708796 to 142708835 39 + TSS region transcription start site region 162244
Tssr162245 X 142720392 to 142720403 11 + TSS region transcription start site region 162245
Tssr162246 X 142720427 to 142720443 16 + TSS region transcription start site region 162246
Tssr162247 X 142736601 to 142736627 26 + TSS region transcription start site region 162247
Mir652 X 142739000 to 142739097 97 + miRNA gene microRNA 652
Tssr162248 X 142739080 to 142739082 2 + TSS region transcription start site region 162248
Gm15049 X 142775885 to 142776347 462 - pseudogene predicted gene 15049
Tssr162249 X 142783205 to 142783211 6 + TSS region transcription start site region 162249
DXMit181 X 142821106 to 142821255 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 181
Tssr162250 X 142825621 to 142825657 36 + TSS region transcription start site region 162250
Tssr162251 X 142825667 to 142825690 23 + TSS region transcription start site region 162251
Tssr162252 X 142825698 to 142825716 18 + TSS region transcription start site region 162252
Tssr162253 X 142832496 to 142832517 21 + TSS region transcription start site region 162253
Tssr162254 X 142832520 to 142832548 28 + TSS region transcription start site region 162254
Tssr164301 X 142852512 to 142852516 4 - TSS region transcription start site region 164301
Tssr164302 X 142852595 to 142852609 14 - TSS region transcription start site region 164302
Ammecr1 X 142853474 to 142966728 113254 - protein coding gene Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
Gm44351 X 142962603 to 142962697 94 - miRNA gene predicted gene, 44351
Cpgi22979 X 142965799 to 142967204 1405 CpG island CpG island 22979
Tssr164303 X 142966665 to 142966675 10 - TSS region transcription start site region 164303
Tssr164304 X 142966709 to 142966734 25 - TSS region transcription start site region 164304
Tssr164305 X 142966745 to 142966762 17 - TSS region transcription start site region 164305
Tssr164306 X 142966781 to 142966790 9 - TSS region transcription start site region 164306
Tssr162255 X 143059106 to 143059115 9 + TSS region transcription start site region 162255
Rtl9 X 143099594 to 143104297 4703 + protein coding gene retrotransposon Gag like 9
Tssr164307 X 143183101 to 143183104 3 - TSS region transcription start site region 164307
Gm4760 X 143183508 to 143184537 1029 - pseudogene predicted gene 4760
DXMit35 X 143186238 to 143186395 157 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 35
Chrdl1 X 143285674 to 143394262 108588 - protein coding gene chordin-like 1
Tssr164308 X 143393850 to 143393861 11 - TSS region transcription start site region 164308
Tssr164309 X 143393878 to 143393891 13 - TSS region transcription start site region 164309
Cpgi22980 X 143393878 to 143394125 247 CpG island CpG island 22980
Tssr164310 X 143393893 to 143393922 29 - TSS region transcription start site region 164310
Gm23325 X 143413898 to 143414026 128 + snoRNA gene predicted gene, 23325
Tssr162256 X 143483006 to 143483015 9 + TSS region transcription start site region 162256
Tssr162257 X 143483029 to 143483057 28 + TSS region transcription start site region 162257
Tssr164311 X 143483043 to 143483052 9 - TSS region transcription start site region 164311
Tssr164312 X 143483062 to 143483122 60 - TSS region transcription start site region 164312
Tssr162258 X 143518400 to 143518414 14 + TSS region transcription start site region 162258
Tssr162259 X 143518513 to 143518528 15 + TSS region transcription start site region 162259
Tssr162260 X 143518539 to 143518556 17 + TSS region transcription start site region 162260
Tssr162261 X 143518562 to 143518574 12 + TSS region transcription start site region 162261
Tssr162262 X 143518576 to 143518599 23 + TSS region transcription start site region 162262
Pak3 X 143518591 to 143797796 279205 + protein coding gene p21 (RAC1) activated kinase 3
Tssr162263 X 143518671 to 143518703 32 + TSS region transcription start site region 162263
Tssr162264 X 143518706 to 143518717 11 + TSS region transcription start site region 162264
Tssr162265 X 143518726 to 143518737 11 + TSS region transcription start site region 162265
DXMit185 X 143621965 to 143622087 122 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 185
Tssr162266 X 143664333 to 143664354 21 + TSS region transcription start site region 162266
Tssr162267 X 143664357 to 143664362 5 + TSS region transcription start site region 162267
Tssr162268 X 143664365 to 143664399 34 + TSS region transcription start site region 162268
Tssr162269 X 143685049 to 143685073 24 + TSS region transcription start site region 162269
Tssr162270 X 143685077 to 143685085 8 + TSS region transcription start site region 162270
Tssr5697 X 143685092 to 143685100 8 + TSS region transcription start site region 5697
Tssr162271 X 143784232 to 143784235 3 + TSS region transcription start site region 162271
Tssr164313 X 143792498 to 143792501 3 - TSS region transcription start site region 164313
Capn6 X 143802236 to 143827412 25176 - protein coding gene calpain 6
Gm47298 X 143827223 to 143827344 121 - miRNA gene predicted gene, 47298
Tssr164314 X 143827306 to 143827367 61 - TSS region transcription start site region 164314
Tssr164315 X 143827378 to 143827386 8 - TSS region transcription start site region 164315
Tssr164316 X 143827391 to 143827402 11 - TSS region transcription start site region 164316
Dcx X 143855842 to 143933275 77433 - protein coding gene doublecortin
Tssr164317 X 143860396 to 143860408 12 - TSS region transcription start site region 164317
Tssr164318 X 143860934 to 143860973 39 - TSS region transcription start site region 164318
Tssr164319 X 143860974 to 143861006 32 - TSS region transcription start site region 164319
Tssr164320 X 143861089 to 143861100 11 - TSS region transcription start site region 164320
Tssr164321 X 143861149 to 143861160 11 - TSS region transcription start site region 164321