Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:139275943-140325963

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112 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Platr21 X 139240226 to 139357738 117512 - lncRNA gene pluripotency associated transcript 21
Tssr162144 X 139317690 to 139317717 27 + TSS region transcription start site region 162144
Trap1a X 139333683 to 139338169 4486 + protein coding gene tumor rejection antigen P1A
Tssr162145 X 139333837 to 139333870 33 + TSS region transcription start site region 162145
Tssr162146 X 139333907 to 139333918 11 + TSS region transcription start site region 162146
Tssr162147 X 139334153 to 139334162 9 + TSS region transcription start site region 162147
Cpgi22963 X 139334183 to 139334364 181 CpG island CpG island 22963
Tssr162148 X 139334249 to 139334256 7 + TSS region transcription start site region 162148
Tssr162149 X 139335491 to 139335494 3 + TSS region transcription start site region 162149
Tssr162150 X 139335843 to 139335856 13 + TSS region transcription start site region 162150
Tssr162151 X 139335890 to 139335901 11 + TSS region transcription start site region 162151
Tssr162152 X 139335907 to 139335931 24 + TSS region transcription start site region 162152
Tssr164216 X 139356734 to 139356744 10 - TSS region transcription start site region 164216
Tssr164217 X 139357703 to 139357740 37 - TSS region transcription start site region 164217
Gm8061 X 139358468 to 139359257 789 + pseudogene predicted gene 8061
Cpgi22964 X 139441076 to 139441241 165 CpG island CpG island 22964
DXMit4 X 139475662 to 139475768 106 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 4
Tswt X 139475662 to 152006342 12530680 QTL testis weight
Tssr162153 X 139480365 to 139480372 7 + TSS region transcription start site region 162153
Radx X 139480367 to 139554582 74215 + protein coding gene RPA1 related single stranded DNA binding protein, X-linked
Tssr162154 X 139480464 to 139480468 4 + TSS region transcription start site region 162154
Tssr162155 X 139481829 to 139481833 4 + TSS region transcription start site region 162155
Tssr162156 X 139524829 to 139524851 22 + TSS region transcription start site region 162156
Tssr162157 X 139563202 to 139563214 12 + TSS region transcription start site region 162157
Tssr162158 X 139563318 to 139563339 21 + TSS region transcription start site region 162158
Rnf128 X 139563340 to 139673145 109805 + protein coding gene ring finger protein 128
Tssr162159 X 139563695 to 139563746 51 + TSS region transcription start site region 162159
Tssr162160 X 139610209 to 139610238 29 + TSS region transcription start site region 162160
Cpgi22965 X 139610359 to 139611300 941 CpG island CpG island 22965
Tssr162161 X 139610596 to 139610600 4 + TSS region transcription start site region 162161
Tssr162162 X 139610612 to 139610632 20 + TSS region transcription start site region 162162
Tssr5685 X 139610660 to 139610672 12 + TSS region transcription start site region 5685
Tssr162163 X 139617384 to 139617395 11 + TSS region transcription start site region 162163
Tssr162164 X 139618524 to 139618532 8 + TSS region transcription start site region 162164
Tssr162165 X 139621504 to 139621521 17 + TSS region transcription start site region 162165
Tssr162166 X 139651699 to 139651718 19 + TSS region transcription start site region 162166
Gm24380 X 139654294 to 139654617 323 - unclassified non-coding RNA gene predicted gene, 24380
Tssr162167 X 139665420 to 139665432 12 + TSS region transcription start site region 162167
Tssr162168 X 139671772 to 139671787 15 + TSS region transcription start site region 162168
Tssr162169 X 139671851 to 139671862 11 + TSS region transcription start site region 162169
Tssr162170 X 139671921 to 139671933 12 + TSS region transcription start site region 162170
Tssr162171 X 139672010 to 139672025 15 + TSS region transcription start site region 162171
Tssr162172 X 139672030 to 139672051 21 + TSS region transcription start site region 162172
Tssr162173 X 139672108 to 139672117 9 + TSS region transcription start site region 162173
Tssr162174 X 139672122 to 139672154 32 + TSS region transcription start site region 162174
Tssr162175 X 139672190 to 139672205 15 + TSS region transcription start site region 162175
Tssr162176 X 139672269 to 139672296 27 + TSS region transcription start site region 162176
Tssr162177 X 139672347 to 139672361 14 + TSS region transcription start site region 162177
Gm6322 X 139676087 to 139677489 1402 - pseudogene predicted gene 6322
Tssr162178 X 139684954 to 139684968 14 + TSS region transcription start site region 162178
Tssr162179 X 139684980 to 139685082 102 + TSS region transcription start site region 162179
Tbc1d8b X 139684996 to 139753405 68409 + protein coding gene TBC1 domain family, member 8B
Cpgi22966 X 139685010 to 139685668 658 CpG island CpG island 22966
Gm15013 X 139713681 to 139714481 800 - pseudogene predicted gene 15013
Tssr164218 X 139714503 to 139714507 4 - TSS region transcription start site region 164218
Ripply1 X 139779681 to 139782353 2672 - protein coding gene ripply transcriptional repressor 1
Tssr164219 X 139782359 to 139782368 9 - TSS region transcription start site region 164219
Tssr5686 X 139782495 to 139782496 1 - TSS region transcription start site region 5686
Tssr162180 X 139792591 to 139792623 32 + TSS region transcription start site region 162180
Gm15012 X 139795000 to 139795105 105 - pseudogene predicted gene 15012
Tssr164220 X 139796370 to 139796399 29 - TSS region transcription start site region 164220
Tssr162181 X 139800699 to 139800724 25 + TSS region transcription start site region 162181
Tssr162182 X 139800730 to 139800741 11 + TSS region transcription start site region 162182
Tssr162183 X 139800795 to 139800811 16 + TSS region transcription start site region 162183
Cldn2 X 139800828 to 139811386 10558 + protein coding gene claudin 2
Tssr162184 X 139800943 to 139800963 20 + TSS region transcription start site region 162184
Tssr162185 X 139800968 to 139800979 11 + TSS region transcription start site region 162185
Tssr162186 X 139800981 to 139800992 11 + TSS region transcription start site region 162186
Tssr162187 X 139806064 to 139806067 3 + TSS region transcription start site region 162187
Tssr162188 X 139806069 to 139806079 10 + TSS region transcription start site region 162188
Tssr5687 X 139807510 to 139807512 2 + TSS region transcription start site region 5687
Tssr162189 X 139807758 to 139807768 10 + TSS region transcription start site region 162189
Tssr162190 X 139808253 to 139808267 14 + TSS region transcription start site region 162190
Tssr162191 X 139808271 to 139808290 19 + TSS region transcription start site region 162191
Tssr162192 X 139808517 to 139808576 59 + TSS region transcription start site region 162192
Tssr162193 X 139808595 to 139808628 33 + TSS region transcription start site region 162193
Tssr162194 X 139808633 to 139808649 16 + TSS region transcription start site region 162194
Tssr162195 X 139809106 to 139809124 18 + TSS region transcription start site region 162195
Morc4 X 139821632 to 139871677 50045 - protein coding gene microrchidia 4
Tssr164221 X 139822414 to 139822419 5 - TSS region transcription start site region 164221
Tssr164222 X 139834738 to 139834744 6 - TSS region transcription start site region 164222
Cpgi22967 X 139870818 to 139871791 973 CpG island CpG island 22967
Tssr164223 X 139871478 to 139871489 11 - TSS region transcription start site region 164223
Tssr164224 X 139871507 to 139871515 8 - TSS region transcription start site region 164224
Tssr164225 X 139871615 to 139871630 15 - TSS region transcription start site region 164225
Tssr164226 X 139871637 to 139871670 33 - TSS region transcription start site region 164226
Rbm41 X 139889511 to 139998595 109084 - protein coding gene RNA binding motif protein 41
Gm15011 X 139892955 to 139894415 1460 + pseudogene predicted gene 15011
Tssr162196 X 139953852 to 139953853 1 + TSS region transcription start site region 162196
Tssr164227 X 139997848 to 139997864 16 - TSS region transcription start site region 164227
Tssr164228 X 139998519 to 139998566 47 - TSS region transcription start site region 164228
Nup62cl X 140006802 to 140062707 55905 - protein coding gene nucleoporin 62 C-terminal like
Cpgi22968 X 140061119 to 140061819 700 CpG island CpG island 22968
Cpgi22969 X 140062066 to 140062743 677 CpG island CpG island 22969
Tssr164229 X 140062295 to 140062340 45 - TSS region transcription start site region 164229
Tssr164230 X 140062448 to 140062460 12 - TSS region transcription start site region 164230
Tssr164231 X 140062550 to 140062583 33 - TSS region transcription start site region 164231
Tssr164232 X 140062584 to 140062605 21 - TSS region transcription start site region 164232
Tssr164233 X 140062719 to 140062726 7 - TSS region transcription start site region 164233
Tssr162197 X 140062874 to 140062889 15 + TSS region transcription start site region 162197
Pih1h3b X 140062879 to 140106797 43918 + protein coding gene PIH1 domain containing 3B
Tssr162198 X 140062904 to 140062928 24 + TSS region transcription start site region 162198
Gm6298 X 140084480 to 140085460 980 - pseudogene predicted gene 6298
Gm39537 X 140127729 to 140139265 11536 - lncRNA gene predicted gene, 39537
Gm15046 X 140178698 to 140277862 99164 - lincRNA gene predicted gene 15046
DXMit175 X 140205161 to 140205335 174 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 175
Cpgi22970 X 140277405 to 140278715 1310 CpG island CpG island 22970
Tssr162199 X 140277742 to 140277755 13 + TSS region transcription start site region 162199
Tssr162200 X 140277756 to 140277765 9 + TSS region transcription start site region 162200
DXMit131 X 140302317 to 140302463 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 131
Mhysq2 X 140302463 to 72410246 -67892217 QTL male hybrid sterility QTL 2
Mir3475 X 140310948 to 140311012 64 + miRNA gene microRNA 3475