Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:138696243-139483403

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Il1rapl2 X 137570608 to 138846946 1276338 + protein coding gene interleukin 1 receptor accessory protein-like 2
Gm15001 X 138742800 to 138743876 1076 - pseudogene predicted gene 15001
Cpgi22961 X 138914092 to 138914848 756 CpG island CpG island 22961
Tssr162120 X 138914392 to 138914403 11 + TSS region transcription start site region 162120
Tssr162121 X 138914422 to 138914438 16 + TSS region transcription start site region 162121
Nrk X 138914430 to 139010532 96102 + protein coding gene Nik related kinase
Tssr162122 X 138914445 to 138914460 15 + TSS region transcription start site region 162122
Tssr5684 X 138920337 to 138920338 1 + TSS region transcription start site region 5684
Tssr162123 X 138936323 to 138936329 6 + TSS region transcription start site region 162123
Tssr162124 X 138975492 to 138975539 47 + TSS region transcription start site region 162124
Tssr162125 X 138985491 to 138985502 11 + TSS region transcription start site region 162125
Tssr162126 X 138999673 to 138999688 15 + TSS region transcription start site region 162126
Tssr162127 X 139007666 to 139007677 11 + TSS region transcription start site region 162127
Tssr162128 X 139008740 to 139008760 20 + TSS region transcription start site region 162128
Tssr162129 X 139009057 to 139009077 20 + TSS region transcription start site region 162129
Tssr162130 X 139009650 to 139009661 11 + TSS region transcription start site region 162130
Tssr162131 X 139009792 to 139009803 11 + TSS region transcription start site region 162131
Tssr162132 X 139009926 to 139009929 3 + TSS region transcription start site region 162132
Tssr162133 X 139009936 to 139009941 5 + TSS region transcription start site region 162133
Tssr162134 X 139010044 to 139010054 10 + TSS region transcription start site region 162134
Tssr162135 X 139010068 to 139010091 23 + TSS region transcription start site region 162135
Tssr162136 X 139010097 to 139010113 16 + TSS region transcription start site region 162136
Tssr162137 X 139010119 to 139010144 25 + TSS region transcription start site region 162137
Tssr162138 X 139010145 to 139010233 88 + TSS region transcription start site region 162138
Serpina7 X 139079257 to 139085236 5979 - protein coding gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
Tssr164214 X 139085211 to 139085225 14 - TSS region transcription start site region 164214
Tssr164215 X 139085230 to 139085247 17 - TSS region transcription start site region 164215
Tssr162139 X 139086226 to 139086250 24 + TSS region transcription start site region 162139
4930513O06Rik X 139086243 to 139093403 7160 + protein coding gene RIKEN cDNA 4930513O06 gene
Gm19226 X 139116525 to 139117508 983 + pseudogene predicted gene, 19226
Tssr162140 X 139179207 to 139179232 25 + TSS region transcription start site region 162140
4933428M09Rik X 139179228 to 139181009 1781 + protein coding gene RIKEN cDNA 4933428M09 gene
Tssr162141 X 139179243 to 139179246 3 + TSS region transcription start site region 162141
Gm15007 X 139201342 to 139202051 709 - pseudogene predicted gene 15007
Cpgi22962 X 139209865 to 139210294 429 CpG island CpG island 22962
Tssr162142 X 139210031 to 139210046 15 + TSS region transcription start site region 162142
Pwwp3b X 139210042 to 139238335 28293 + protein coding gene PWWP domain containing 3B
Tssr162143 X 139217168 to 139217190 22 + TSS region transcription start site region 162143
Platr21 X 139240226 to 139357738 117512 - lncRNA gene pluripotency associated transcript 21
Gm15002 X 139256924 to 139257611 687 - pseudogene predicted gene 15002
Tssr162144 X 139317690 to 139317717 27 + TSS region transcription start site region 162144
Trap1a X 139333683 to 139338169 4486 + protein coding gene tumor rejection antigen P1A
Tssr162145 X 139333837 to 139333870 33 + TSS region transcription start site region 162145
Tssr162146 X 139333907 to 139333918 11 + TSS region transcription start site region 162146
Tssr162147 X 139334153 to 139334162 9 + TSS region transcription start site region 162147
Cpgi22963 X 139334183 to 139334364 181 CpG island CpG island 22963
Tssr162148 X 139334249 to 139334256 7 + TSS region transcription start site region 162148
Tssr162149 X 139335491 to 139335494 3 + TSS region transcription start site region 162149
Tssr162150 X 139335843 to 139335856 13 + TSS region transcription start site region 162150
Tssr162151 X 139335890 to 139335901 11 + TSS region transcription start site region 162151
Tssr162152 X 139335907 to 139335931 24 + TSS region transcription start site region 162152
Tssr164216 X 139356734 to 139356744 10 - TSS region transcription start site region 164216
Tssr164217 X 139357703 to 139357740 37 - TSS region transcription start site region 164217
Gm8061 X 139358468 to 139359257 789 + pseudogene predicted gene 8061
Cpgi22964 X 139441076 to 139441241 165 CpG island CpG island 22964
DXMit4 X 139475662 to 139475768 106 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 4
Tswt X 139475662 to 152006342 12530680 QTL testis weight
Tssr162153 X 139480365 to 139480372 7 + TSS region transcription start site region 162153
Radx X 139480367 to 139554582 74215 + protein coding gene RPA1 related single stranded DNA binding protein, X-linked
Tssr162154 X 139480464 to 139480468 4 + TSS region transcription start site region 162154
Tssr162155 X 139481829 to 139481833 4 + TSS region transcription start site region 162155