Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:13799727-15629733

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27 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cask X 13517080 to 13846784 329704 - protein coding gene calcium/calmodulin-dependent serine protein kinase (MAGUK family)
Cpgi22636 X 13845591 to 13847141 1550 CpG island CpG island 22636
Tssr163018 X 13846475 to 13846493 18 - TSS region transcription start site region 163018
Tssr163019 X 13846508 to 13846591 83 - TSS region transcription start site region 163019
Tssr163020 X 13846629 to 13846640 11 - TSS region transcription start site region 163020
Tssr163021 X 13846746 to 13846769 23 - TSS region transcription start site region 163021
n-TQttg1 X 13859166 to 13859237 71 - tRNA gene nuclear encoded tRNA glutamine 1 (anticodon TTG)
Gm5381 X 13927287 to 13929204 1917 - pseudogene predicted gene 5381
Gm25552 X 13985385 to 13985475 90 - snRNA gene predicted gene, 25552
DXMit139 X 14163503 to 14163652 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 139
Gm18170 X 14186307 to 14251841 65534 - pseudogene predicted gene, 18170
H2al1n X 14211148 to 14211657 509 + protein coding gene H2A histone family member L1N
Gm14867 X 14289739 to 14290604 865 + pseudogene predicted gene 14867
Gm25202 X 14315401 to 14315591 190 - snRNA gene predicted gene, 25202
Tssr160610 X 14680513 to 14680537 24 + TSS region transcription start site region 160610
n-TPtgg3 X 14702616 to 14702687 71 - tRNA gene nuclear encoded tRNA proline 3 (anticodon TGG)
Tssr160611 X 14714727 to 14714733 6 + TSS region transcription start site region 160611
Gm14505 X 14796735 to 14839980 43245 + lincRNA gene predicted gene 14505
DXMit163 X 14845811 to 14845908 97 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 163
DXMit72 X 14893710 to 14893848 138 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 72
Gm9435 X 14955101 to 14955974 873 - pseudogene predicted gene 9435
Tssr163022 X 14955990 to 14956005 15 - TSS region transcription start site region 163022
Ppp1r2-ps9 X 15110585 to 15111466 881 - pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9
Tssr163023 X 15111456 to 15111471 15 - TSS region transcription start site region 163023
Gm14519 X 15365179 to 15365490 311 + pseudogene predicted gene 14519
Gm14518 X 15522456 to 15522994 538 + pseudogene predicted gene 14518
Gm14517 X 15524425 to 15524761 336 - pseudogene predicted gene 14517