Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:136071359-136471394

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(XNxf2-Nxf3)1Jw X 134944526 to 136085255 1140729 chromosomal deletion deletion, Chr X, Jeremy Wang 1
Nxf3 X 136072099 to 136085255 13156 - protein coding gene nuclear RNA export factor 3
Tssr164177 X 136085168 to 136085173 5 - TSS region transcription start site region 164177
Tssr164178 X 136085196 to 136085204 8 - TSS region transcription start site region 164178
Tssr164179 X 136085206 to 136085250 44 - TSS region transcription start site region 164179
Tssr164180 X 136085386 to 136085403 17 - TSS region transcription start site region 164180
DXMit174 X 136088345 to 136088434 89 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 174
5730412P04Rik X 136104603 to 136115420 10817 + lncRNA gene RIKEN cDNA 5730412P04 gene
Tssr162030 X 136139000 to 136139009 9 + TSS region transcription start site region 162030
Tssr162031 X 136139039 to 136139053 14 + TSS region transcription start site region 162031
Bex4 X 136139045 to 136140439 1394 + protein coding gene brain expressed X-linked 4
Cpgi22951 X 136139363 to 136139699 336 CpG island CpG island 22951
Tssr162032 X 136139448 to 136139451 3 + TSS region transcription start site region 162032
DXMit38 X 136158013 to 136158148 135 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 38
Tceal8 X 136168984 to 136172251 3267 - protein coding gene transcription elongation factor A (SII)-like 8
Tssr164181 X 136170985 to 136171008 23 - TSS region transcription start site region 164181
Tssr164182 X 136172164 to 136172194 30 - TSS region transcription start site region 164182
Tssr164183 X 136172195 to 136172228 33 - TSS region transcription start site region 164183
Tssr164184 X 136172233 to 136172244 11 - TSS region transcription start site region 164184
Mir6383 X 136183245 to 136183360 115 + miRNA gene microRNA 6383
Gm41901 X 136189900 to 136200652 10752 - lncRNA gene predicted gene, 41901
n-TKctt19 X 136195732 to 136195804 72 - tRNA gene nuclear encoded tRNA lysine 19 (anticodon CTT)
Tceal5 X 136200948 to 136203851 2903 - protein coding gene transcription elongation factor A (SII)-like 5
Tssr162033 X 136201666 to 136201727 61 + TSS region transcription start site region 162033
Tssr164185 X 136203816 to 136203926 110 - TSS region transcription start site region 164185
Bex1 X 136213972 to 136215513 1541 - protein coding gene brain expressed X-linked 1
Tceal7 X 136214914 to 136226100 11186 + protein coding gene transcription elongation factor A (SII)-like 7
Cpgi22952 X 136215024 to 136215239 215 CpG island CpG island 22952
Tssr162034 X 136224035 to 136224053 18 + TSS region transcription start site region 162034
Tssr162035 X 136225543 to 136225555 12 + TSS region transcription start site region 162035
Gm39535 X 136242830 to 136244986 2156 - lncRNA gene predicted gene, 39535
Tssr162036 X 136245065 to 136245102 37 + TSS region transcription start site region 162036
Tceal9 X 136245080 to 136247139 2059 + protein coding gene transcription elongation factor A like 9
Tssr162037 X 136245117 to 136245175 58 + TSS region transcription start site region 162037
Cpgi22953 X 136269850 to 136270035 185 CpG island CpG island 22953
Bex3 X 136270253 to 136271978 1725 + protein coding gene brain expressed X-linked 3
Tssr162038 X 136270258 to 136270269 11 + TSS region transcription start site region 162038
Tssr162039 X 136270278 to 136270283 5 + TSS region transcription start site region 162039
Tssr162040 X 136270302 to 136270352 50 + TSS region transcription start site region 162040
Tssr162041 X 136271359 to 136271394 35 + TSS region transcription start site region 162041
Tssr164186 X 136271430 to 136271453 23 - TSS region transcription start site region 164186
Tssr162042 X 136271449 to 136271467 18 + TSS region transcription start site region 162042
Tssr162043 X 136271668 to 136271687 19 + TSS region transcription start site region 162043
n-R5s12 X 136277505 to 136277623 118 + rRNA gene nuclear encoded rRNA 5S 12
Nsa2-ps2 X 136328299 to 136329068 769 + pseudogene NSA2 ribosome biogenesis homolog, pseudogene 2
Gm14997 X 136329845 to 136330474 629 - pseudogene predicted gene 14997
Gm4917 X 136338065 to 136338711 646 + pseudogene predicted gene 4917
Tssr162044 X 136340053 to 136340073 20 + TSS region transcription start site region 162044
Gm7973 X 136340181 to 136340668 487 + pseudogene predicted gene 7973
Gm14994 X 136348185 to 136349266 1081 - pseudogene predicted gene 14994
Gm14999 X 136356655 to 136357278 623 - pseudogene predicted gene 14999
n-TAtgc2 X 136357602 to 136357673 71 + tRNA gene nuclear encoded tRNA alanine 2 (anticodon TGC)
Gm14998 X 136366756 to 136367250 494 + pseudogene predicted gene 14998
Gm14993 X 136367249 to 136367412 163 - pseudogene predicted gene 14993
n-TAcgc4 X 136367721 to 136367792 71 + tRNA gene nuclear encoded tRNA alanine 4 (anticodon CGC)
n-TAcgc7 X 136379366 to 136379437 71 - tRNA gene nuclear encoded tRNA alanine 7 (anticodon CGC)
Gm14992 X 136379912 to 136380423 511 - pseudogene predicted gene 14992
n-TAtgc6 X 136380747 to 136380818 71 + tRNA gene nuclear encoded tRNA alanine 6 (anticodon TGC)
n-TAcgc6 X 136395522 to 136395593 71 - tRNA gene nuclear encoded tRNA alanine 6 (anticodon CGC)
Gm14996 X 136396068 to 136396579 511 - pseudogene predicted gene 14996
n-TAtgc7 X 136396904 to 136396975 71 + tRNA gene nuclear encoded tRNA alanine 7 (anticodon TGC)
n-TAcgc5 X 136401868 to 136401939 71 + tRNA gene nuclear encoded tRNA alanine 5 (anticodon CGC)
n-TAtgc4 X 136430365 to 136430436 71 - tRNA gene nuclear encoded tRNA alanine 4 (anticodon TGC)
Gm14990 X 136430731 to 136431175 444 + pseudogene predicted gene 14990
Gm14995 X 136438151 to 136438541 390 - pseudogene predicted gene 14995
Kir3dl2 X 136448107 to 136544056 95949 - protein coding gene killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2