Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:135818299-136839068

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(XNxf2-Nxf3)1Jw X 134944526 to 136085255 1140729 chromosomal deletion deletion, Chr X, Jeremy Wang 1
Gprasp2 X 135839034 to 135844730 5696 + protein coding gene G protein-coupled receptor associated sorting protein 2
Tssr162023 X 135839040 to 135839075 35 + TSS region transcription start site region 162023
Tssr162024 X 135839079 to 135839086 7 + TSS region transcription start site region 162024
Tssr162025 X 135839171 to 135839175 4 + TSS region transcription start site region 162025
Bhlhb9 X 135841639 to 135891081 49442 + protein coding gene basic helix-loop-helix domain containing, class B9
Tssr162026 X 135885860 to 135885897 37 + TSS region transcription start site region 162026
Cpgi22949 X 135885896 to 135886325 429 CpG island CpG island 22949
Tssr162027 X 135885903 to 135885943 40 + TSS region transcription start site region 162027
Tssr162028 X 135885949 to 135885978 29 + TSS region transcription start site region 162028
Tssr162029 X 135885986 to 135886019 33 + TSS region transcription start site region 162029
B930008F14Rik X 135910996 to 135915353 4357 unclassified gene RIKEN cDNA B930008F14 gene
Gm31214 X 135970767 to 135983650 12883 + lncRNA gene predicted gene, 31214
DXMit233 X 135981553 to 135981667 114 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 233
1110065H08Rik X 135982662 to 135983644 982 unclassified gene RIKEN cDNA 1110065H08 gene
Gm15016 X 135988547 to 135989266 719 + pseudogene predicted gene 15016
Arxes2 X 135993824 to 135995355 1531 + protein coding gene adipocyte-related X-chromosome expressed sequence 2
Arxes1 X 136033367 to 136034946 1579 + protein coding gene adipocyte-related X-chromosome expressed sequence 1
Tssr164176 X 136051207 to 136051218 11 - TSS region transcription start site region 164176
Bex2 X 136066565 to 136068236 1671 - protein coding gene brain expressed X-linked 2
Cpgi22950 X 136068199 to 136068392 193 CpG island CpG island 22950
Nxf3 X 136072099 to 136085255 13156 - protein coding gene nuclear RNA export factor 3
Tssr164177 X 136085168 to 136085173 5 - TSS region transcription start site region 164177
Tssr164178 X 136085196 to 136085204 8 - TSS region transcription start site region 164178
Tssr164179 X 136085206 to 136085250 44 - TSS region transcription start site region 164179
Tssr164180 X 136085386 to 136085403 17 - TSS region transcription start site region 164180
DXMit174 X 136088345 to 136088434 89 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 174
5730412P04Rik X 136104603 to 136115420 10817 + lncRNA gene RIKEN cDNA 5730412P04 gene
Tssr162030 X 136139000 to 136139009 9 + TSS region transcription start site region 162030
Tssr162031 X 136139039 to 136139053 14 + TSS region transcription start site region 162031
Bex4 X 136139045 to 136140439 1394 + protein coding gene brain expressed X-linked 4
Cpgi22951 X 136139363 to 136139699 336 CpG island CpG island 22951
Tssr162032 X 136139448 to 136139451 3 + TSS region transcription start site region 162032
DXMit38 X 136158013 to 136158148 135 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 38
Tceal8 X 136168984 to 136172251 3267 - protein coding gene transcription elongation factor A (SII)-like 8
Tssr164181 X 136170985 to 136171008 23 - TSS region transcription start site region 164181
Tssr164182 X 136172164 to 136172194 30 - TSS region transcription start site region 164182
Tssr164183 X 136172195 to 136172228 33 - TSS region transcription start site region 164183
Tssr164184 X 136172233 to 136172244 11 - TSS region transcription start site region 164184
Mir6383 X 136183245 to 136183360 115 + miRNA gene microRNA 6383
Gm41901 X 136189900 to 136200652 10752 - lncRNA gene predicted gene, 41901
n-TKctt19 X 136195732 to 136195804 72 - tRNA gene nuclear encoded tRNA lysine 19 (anticodon CTT)
Tceal5 X 136200948 to 136203851 2903 - protein coding gene transcription elongation factor A (SII)-like 5
Tssr162033 X 136201666 to 136201727 61 + TSS region transcription start site region 162033
Tssr164185 X 136203816 to 136203926 110 - TSS region transcription start site region 164185
Bex1 X 136213972 to 136215513 1541 - protein coding gene brain expressed X-linked 1
Tceal7 X 136214914 to 136226100 11186 + protein coding gene transcription elongation factor A (SII)-like 7
Cpgi22952 X 136215024 to 136215239 215 CpG island CpG island 22952
Tssr162034 X 136224035 to 136224053 18 + TSS region transcription start site region 162034
Tssr162035 X 136225543 to 136225555 12 + TSS region transcription start site region 162035
Gm39535 X 136242830 to 136244986 2156 - lncRNA gene predicted gene, 39535
Tssr162036 X 136245065 to 136245102 37 + TSS region transcription start site region 162036
Tceal9 X 136245080 to 136247139 2059 + protein coding gene transcription elongation factor A like 9
Tssr162037 X 136245117 to 136245175 58 + TSS region transcription start site region 162037
Cpgi22953 X 136269850 to 136270035 185 CpG island CpG island 22953
Bex3 X 136270253 to 136271978 1725 + protein coding gene brain expressed X-linked 3
Tssr162038 X 136270258 to 136270269 11 + TSS region transcription start site region 162038
Tssr162039 X 136270278 to 136270283 5 + TSS region transcription start site region 162039
Tssr162040 X 136270302 to 136270352 50 + TSS region transcription start site region 162040
Tssr162041 X 136271359 to 136271394 35 + TSS region transcription start site region 162041
Tssr164186 X 136271430 to 136271453 23 - TSS region transcription start site region 164186
Tssr162042 X 136271449 to 136271467 18 + TSS region transcription start site region 162042
Tssr162043 X 136271668 to 136271687 19 + TSS region transcription start site region 162043
n-R5s12 X 136277505 to 136277623 118 + rRNA gene nuclear encoded rRNA 5S 12
Nsa2-ps2 X 136328299 to 136329068 769 + pseudogene NSA2 ribosome biogenesis homolog, pseudogene 2
Gm14997 X 136329845 to 136330474 629 - pseudogene predicted gene 14997
Gm4917 X 136338065 to 136338711 646 + pseudogene predicted gene 4917
Tssr162044 X 136340053 to 136340073 20 + TSS region transcription start site region 162044
Gm7973 X 136340181 to 136340668 487 + pseudogene predicted gene 7973
Gm14994 X 136348185 to 136349266 1081 - pseudogene predicted gene 14994
Gm14999 X 136356655 to 136357278 623 - pseudogene predicted gene 14999
n-TAtgc2 X 136357602 to 136357673 71 + tRNA gene nuclear encoded tRNA alanine 2 (anticodon TGC)
Gm14998 X 136366756 to 136367250 494 + pseudogene predicted gene 14998
Gm14993 X 136367249 to 136367412 163 - pseudogene predicted gene 14993
n-TAcgc4 X 136367721 to 136367792 71 + tRNA gene nuclear encoded tRNA alanine 4 (anticodon CGC)
n-TAcgc7 X 136379366 to 136379437 71 - tRNA gene nuclear encoded tRNA alanine 7 (anticodon CGC)
Gm14992 X 136379912 to 136380423 511 - pseudogene predicted gene 14992
n-TAtgc6 X 136380747 to 136380818 71 + tRNA gene nuclear encoded tRNA alanine 6 (anticodon TGC)
n-TAcgc6 X 136395522 to 136395593 71 - tRNA gene nuclear encoded tRNA alanine 6 (anticodon CGC)
Gm14996 X 136396068 to 136396579 511 - pseudogene predicted gene 14996
n-TAtgc7 X 136396904 to 136396975 71 + tRNA gene nuclear encoded tRNA alanine 7 (anticodon TGC)
n-TAcgc5 X 136401868 to 136401939 71 + tRNA gene nuclear encoded tRNA alanine 5 (anticodon CGC)
n-TAtgc4 X 136430365 to 136430436 71 - tRNA gene nuclear encoded tRNA alanine 4 (anticodon TGC)
Gm14990 X 136430731 to 136431175 444 + pseudogene predicted gene 14990
Gm14995 X 136438151 to 136438541 390 - pseudogene predicted gene 14995
Kir3dl2 X 136448107 to 136544056 95949 - protein coding gene killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2
Gm14991 X 136486970 to 136488884 1914 + pseudogene predicted gene 14991
Kir3dl1 X 136517999 to 136534306 16307 + protein coding gene killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1
Gm15006 X 136544874 to 136545995 1121 + pseudogene predicted gene 15006
Gm15003 X 136552985 to 136553430 445 - pseudogene predicted gene 15003
n-TAtgc3 X 136553725 to 136553796 71 + tRNA gene nuclear encoded tRNA alanine 3 (anticodon TGC)
n-TAcgc2 X 136567865 to 136567936 71 - tRNA gene nuclear encoded tRNA alanine 2 (anticodon CGC)
Gm15005 X 136568411 to 136568922 511 - pseudogene predicted gene 15005
n-TAtgc8 X 136569246 to 136569317 71 + tRNA gene nuclear encoded tRNA alanine 8 (anticodon TGC)
n-TAcgc1 X 136569763 to 136569835 72 + tRNA gene nuclear encoded tRNA alanine 1 (anticodon CGC)
Gm15004 X 136583864 to 136584493 629 - pseudogene predicted gene 15004
n-TAtgc1 X 136590365 to 136590436 71 + tRNA gene nuclear encoded tRNA alanine 1 (anticodon TGC)
Tssr162045 X 136590841 to 136590866 25 + TSS region transcription start site region 162045
Tceal3 X 136590844 to 136668377 77533 + protein coding gene transcription elongation factor A (SII)-like 3
Dp(XTceal3-Plp1)1Gmh X 136590844 to 136838582 247738 chromosomal duplication duplication 1, Grace Hobson
Tssr162046 X 136666387 to 136666479 92 + TSS region transcription start site region 162046
Gm15010 X 136701246 to 136701652 406 - pseudogene predicted gene 15010
Gm39536 X 136703535 to 136708517 4982 - lncRNA gene predicted gene, 39536
Gm23068 X 136704178 to 136704470 292 + unclassified non-coding RNA gene predicted gene, 23068
Tceal1 X 136707969 to 136709873 1904 + protein coding gene transcription elongation factor A (SII)-like 1
Tssr162047 X 136707976 to 136708040 64 + TSS region transcription start site region 162047
Tssr162048 X 136708044 to 136708064 20 + TSS region transcription start site region 162048
Tssr162049 X 136708389 to 136708404 15 + TSS region transcription start site region 162049
Morf4l2 X 136732942 to 136743686 10744 - protein coding gene mortality factor 4 like 2
Tssr164187 X 136733199 to 136733204 5 - TSS region transcription start site region 164187
Tssr164188 X 136741094 to 136741115 21 - TSS region transcription start site region 164188
Tssr164189 X 136741120 to 136741128 8 - TSS region transcription start site region 164189
Tssr164190 X 136741279 to 136741307 28 - TSS region transcription start site region 164190
Tssr164191 X 136741433 to 136741449 16 - TSS region transcription start site region 164191
Cpgi22954 X 136741496 to 136742245 749 CpG island CpG island 22954
Tssr162050 X 136741821 to 136741864 43 + TSS region transcription start site region 162050
Tssr164192 X 136742056 to 136742076 20 - TSS region transcription start site region 164192
BC065397 X 136742957 to 136803364 60407 + lncRNA gene cDNA sequence BC065397
Tssr164193 X 136743141 to 136743145 4 - TSS region transcription start site region 164193
Tssr164194 X 136743675 to 136743692 17 - TSS region transcription start site region 164194
Glra4 X 136757674 to 136780141 22467 - protein coding gene glycine receptor, alpha 4 subunit
DXMit151 X 136788209 to 136788421 212 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 151
Tssr162051 X 136788461 to 136788504 43 + TSS region transcription start site region 162051
Gm15009 X 136802912 to 136803233 321 + pseudogene predicted gene 15009
Tssr162052 X 136820041 to 136820075 34 + TSS region transcription start site region 162052
Plp1 X 136822166 to 136838582 16416 + protein coding gene proteolipid protein (myelin) 1
Tssr162053 X 136822737 to 136822780 43 + TSS region transcription start site region 162053
Tssr162054 X 136822781 to 136822840 59 + TSS region transcription start site region 162054
Tssr162055 X 136822847 to 136822851 4 + TSS region transcription start site region 162055
Tssr162056 X 136831102 to 136831121 19 + TSS region transcription start site region 162056
Tssr162057 X 136831144 to 136831156 12 + TSS region transcription start site region 162057
Tssr162058 X 136831217 to 136831226 9 + TSS region transcription start site region 162058
Tssr162059 X 136832018 to 136832041 23 + TSS region transcription start site region 162059
Tssr162060 X 136832061 to 136832077 16 + TSS region transcription start site region 162060
Tssr164195 X 136832083 to 136832106 23 - TSS region transcription start site region 164195
Tssr162061 X 136832125 to 136832149 24 + TSS region transcription start site region 162061
Tssr162062 X 136833269 to 136833282 13 + TSS region transcription start site region 162062
Tssr162063 X 136833296 to 136833353 57 + TSS region transcription start site region 162063
Tssr162064 X 136833372 to 136833386 14 + TSS region transcription start site region 162064
Tssr162065 X 136833403 to 136833413 10 + TSS region transcription start site region 162065
Tssr162066 X 136834151 to 136834202 51 + TSS region transcription start site region 162066
Tssr162067 X 136835097 to 136835143 46 + TSS region transcription start site region 162067
Tssr162068 X 136836117 to 136836127 10 + TSS region transcription start site region 162068
Tssr162069 X 136836622 to 136836631 9 + TSS region transcription start site region 162069
Tssr162070 X 136836804 to 136836816 12 + TSS region transcription start site region 162070
Tssr162071 X 136836857 to 136836866 9 + TSS region transcription start site region 162071
Tssr162072 X 136836963 to 136836974 11 + TSS region transcription start site region 162072
Tssr162073 X 136837050 to 136837064 14 + TSS region transcription start site region 162073
Tssr162074 X 136837124 to 136837147 23 + TSS region transcription start site region 162074
Tssr162075 X 136837154 to 136837166 12 + TSS region transcription start site region 162075
Tssr162076 X 136837208 to 136837219 11 + TSS region transcription start site region 162076
Tssr162077 X 136837230 to 136837246 16 + TSS region transcription start site region 162077
Tssr162078 X 136837281 to 136837295 14 + TSS region transcription start site region 162078
Tssr162079 X 136837333 to 136837361 28 + TSS region transcription start site region 162079
Tssr162080 X 136837369 to 136837381 12 + TSS region transcription start site region 162080
Tssr162081 X 136837422 to 136837433 11 + TSS region transcription start site region 162081
Tssr162082 X 136837443 to 136837457 14 + TSS region transcription start site region 162082
Tssr164196 X 136837444 to 136837453 9 - TSS region transcription start site region 164196
Tssr162083 X 136837461 to 136837468 7 + TSS region transcription start site region 162083
Tssr162084 X 136837469 to 136837488 19 + TSS region transcription start site region 162084
Tssr162085 X 136837494 to 136837498 4 + TSS region transcription start site region 162085
Tssr162086 X 136837501 to 136837514 13 + TSS region transcription start site region 162086
Tssr162087 X 136837518 to 136837529 11 + TSS region transcription start site region 162087
Tssr162088 X 136837537 to 136837566 29 + TSS region transcription start site region 162088
Tssr162089 X 136837569 to 136837576 7 + TSS region transcription start site region 162089
Tssr162090 X 136837582 to 136837587 5 + TSS region transcription start site region 162090
Tssr162091 X 136837590 to 136837625 35 + TSS region transcription start site region 162091
Tssr164197 X 136837604 to 136837612 8 - TSS region transcription start site region 164197
Tssr162092 X 136837626 to 136837647 21 + TSS region transcription start site region 162092
Tssr164198 X 136837647 to 136837684 37 - TSS region transcription start site region 164198
Tssr162093 X 136837868 to 136837884 16 + TSS region transcription start site region 162093
Tssr162094 X 136837892 to 136837895 3 + TSS region transcription start site region 162094
Tssr164199 X 136837893 to 136837903 10 - TSS region transcription start site region 164199
Tssr162095 X 136837896 to 136837901 5 + TSS region transcription start site region 162095
Tssr162096 X 136837907 to 136837920 13 + TSS region transcription start site region 162096
Tssr162097 X 136837967 to 136837974 7 + TSS region transcription start site region 162097
Tssr162098 X 136837977 to 136837980 3 + TSS region transcription start site region 162098
Tssr162099 X 136837989 to 136838000 11 + TSS region transcription start site region 162099
Tssr162100 X 136838020 to 136838025 5 + TSS region transcription start site region 162100
Tssr164200 X 136838027 to 136838043 16 - TSS region transcription start site region 164200
Tssr162101 X 136838043 to 136838050 7 + TSS region transcription start site region 162101
Tssr162102 X 136838073 to 136838086 13 + TSS region transcription start site region 162102
Tssr162103 X 136838104 to 136838126 22 + TSS region transcription start site region 162103
DXNds2 X 136838113 to 136838288 175 DNA segment DNA segment, Chr X, Nuffield Department of Surgery 2
DXMit9 X 136838116 to 136838221 105 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 9
Tssr162104 X 136838128 to 136838144 16 + TSS region transcription start site region 162104
Tssr162105 X 136838161 to 136838172 11 + TSS region transcription start site region 162105