Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:134631387-138701479

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356 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bw3 X 134639291 to 166515599 31876308 QTL body weight QTL 3
DXMit3 X 134639291 to 134639466 175 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 3
Gm19502 X 134649743 to 134650816 1073 - pseudogene predicted gene, 19502
DXMit129 X 134651398 to 134651538 140 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 129
Tssr162004 X 134681469 to 134681492 23 + TSS region transcription start site region 162004
Gm7857 X 134681520 to 134681877 357 + pseudogene predicted gene 7857
B230119M05Rik X 134684562 to 134686462 1900 - lncRNA gene RIKEN cDNA B230119M05 gene
Tssr162005 X 134685117 to 134685149 32 + TSS region transcription start site region 162005
Tssr162006 X 134685161 to 134685179 18 + TSS region transcription start site region 162006
Tssr162007 X 134685208 to 134685258 50 + TSS region transcription start site region 162007
Cpgi22944 X 134686339 to 134686734 395 CpG island CpG island 22944
Armcx4 X 134686519 to 134696757 10238 + protein coding gene armadillo repeat containing, X-linked 4
Tssr162008 X 134686528 to 134686536 8 + TSS region transcription start site region 162008
Tssr162009 X 134686548 to 134686569 21 + TSS region transcription start site region 162009
Tssr162010 X 134687090 to 134687106 16 + TSS region transcription start site region 162010
DXErtd573e X 134697508 to 134697756 248 DNA segment DNA segment, Chr X, ERATO Doi 573, expressed
Tssr162011 X 134717914 to 134717920 6 + TSS region transcription start site region 162011
Tssr162012 X 134717930 to 134717941 11 + TSS region transcription start site region 162012
Tssr162013 X 134717943 to 134718018 75 + TSS region transcription start site region 162013
Armcx1 X 134717963 to 134721917 3954 + protein coding gene armadillo repeat containing, X-linked 1
Gm39534 X 134723285 to 134729919 6634 + lncRNA gene predicted gene, 39534
Gm16397 X 134731571 to 134732064 493 + pseudogene predicted pseudogene 16397
Gm10344 X 134745495 to 134746913 1418 - unclassified gene predicted gene 10344
Armcx6 X 134748461 to 134751417 2956 - protein coding gene armadillo repeat containing, X-linked 6
Tssr164156 X 134751370 to 134751424 54 - TSS region transcription start site region 164156
Tssr162014 X 134756563 to 134756617 54 + TSS region transcription start site region 162014
Armcx3 X 134756595 to 134761455 4860 + protein coding gene armadillo repeat containing, X-linked 3
Mir7093 X 134757631 to 134757731 100 + miRNA gene microRNA 7093
Armcx2 X 134804145 to 134809221 5076 - protein coding gene armadillo repeat containing, X-linked 2
Tssr164157 X 134806649 to 134806681 32 - TSS region transcription start site region 164157
Tssr164158 X 134808984 to 134809002 18 - TSS region transcription start site region 164158
Gm7222 X 134828140 to 134829045 905 - pseudogene predicted gene 7222
Gm15018 X 134906002 to 134906622 620 - pseudogene predicted gene 15018
Del(XNxf2-Nxf3)1Jw X 134944526 to 136085255 1140729 chromosomal deletion deletion, Chr X, Jeremy Wang 1
Nxf2 X 134944526 to 134964754 20228 - protein coding gene nuclear RNA export factor 2
Cpgi22945 X 134963697 to 134964017 320 CpG island CpG island 22945
Tssr164159 X 134964695 to 134964726 31 - TSS region transcription start site region 164159
Tssr164160 X 134964742 to 134964767 25 - TSS region transcription start site region 164160
Zmat1 X 134971372 to 135009209 37837 - protein coding gene zinc finger, matrin type 1
Tssr164161 X 134973136 to 134973147 11 - TSS region transcription start site region 164161
Cpgi22946 X 135008759 to 135009378 619 CpG island CpG island 22946
Tssr162015 X 135008843 to 135008857 14 + TSS region transcription start site region 162015
Tssr164162 X 135009192 to 135009225 33 - TSS region transcription start site region 164162
Tssr164163 X 135009226 to 135009236 10 - TSS region transcription start site region 164163
3632454L22Rik X 135022734 to 135060336 37602 - lncRNA gene RIKEN cDNA 3632454L22 gene
Tssr164164 X 135025307 to 135025344 37 - TSS region transcription start site region 164164
Cpgi22947 X 135035876 to 135036180 304 CpG island CpG island 22947
Tssr164165 X 135036078 to 135036090 12 - TSS region transcription start site region 164165
Tssr164166 X 135036091 to 135036099 8 - TSS region transcription start site region 164166
Gm6207 X 135119960 to 135122983 3023 - pseudogene predicted gene 6207
Gm15020 X 135122878 to 135152596 29718 - unclassified non-coding RNA gene predicted gene 15020
Gm25868 X 135165848 to 135165961 113 + snoRNA gene predicted gene, 25868
Gm15023 X 135167624 to 135177632 10008 - protein coding gene predicted gene 15023
Tceal6 X 135208687 to 135210687 2000 - protein coding gene transcription elongation factor A (SII)-like 6
Tssr164167 X 135210605 to 135210612 7 - TSS region transcription start site region 164167
Tssr164168 X 135210621 to 135210630 9 - TSS region transcription start site region 164168
Tssr164169 X 135210640 to 135210661 21 - TSS region transcription start site region 164169
Tssr164170 X 135210672 to 135210700 28 - TSS region transcription start site region 164170
Tssr164171 X 135210765 to 135210789 24 - TSS region transcription start site region 164171
Gm15022 X 135240154 to 135240899 745 + pseudogene predicted gene 15022
Tssr162016 X 135263307 to 135263316 9 + TSS region transcription start site region 162016
Pramel X 135270853 to 135274214 3361 + pseudogene preferentially expressed antigen in melanoma-like
Pramel3 X 135302307 to 135312652 10345 + protein coding gene preferentially expressed antigen in melanoma-like 3
Gm25936 X 135314316 to 135314429 113 - snoRNA gene predicted gene, 25936
Gm15017 X 135329761 to 135349127 19366 + unclassified non-coding RNA gene predicted gene 15017
Gm6215 X 135349021 to 135352020 2999 + pseudogene predicted pseudogene 6215
Gm5128 X 135373284 to 135383393 10109 + protein coding gene predicted gene 5128
Gm22006 X 135384915 to 135385028 113 - snoRNA gene predicted gene, 22006
Gm6221 X 135409856 to 135412952 3096 + pseudogene predicted pseudogene 6221
Gm7903 X 135433835 to 135443830 9995 + protein coding gene predicted gene 7903
Gm24416 X 135445519 to 135445632 113 - snoRNA gene predicted gene, 24416
Gm7905 X 135470455 to 135473527 3072 + pseudogene predicted pseudogene 7905
AV320801 X 135494588 to 135504594 10006 + protein coding gene expressed sequence AV320801
Gm22233 X 135506257 to 135506370 113 - snoRNA gene predicted gene, 22233
Gm15015 X 135519591 to 135549316 29725 + unclassified non-coding RNA gene predicted gene 15015
Gm6228 X 135549209 to 135552220 3011 + pseudogene predicted gene 6228
Nxf7 X 135579555 to 135598777 19222 - protein coding gene nuclear RNA export factor 7
Tssr164172 X 135598778 to 135598786 8 - TSS region transcription start site region 164172
Prame X 135613002 to 135627705 14703 - protein coding gene preferentially expressed antigen in melanoma
Gm15021 X 135615994 to 135616732 738 + pseudogene predicted gene 15021
Tssr164173 X 135627682 to 135627693 11 - TSS region transcription start site region 164173
Tcp11x2 X 135654698 to 135693790 39092 - protein coding gene t-complex 11 family, X-linked 2
Tssr164174 X 135693783 to 135693795 12 - TSS region transcription start site region 164174
Tssr162017 X 135707173 to 135707174 1 + TSS region transcription start site region 162017
Tmsb15a X 135718667 to 135725261 6594 - protein coding gene thymosin beta 15a
Tssr164175 X 135720627 to 135720641 14 - TSS region transcription start site region 164175
Gm15019 X 135726998 to 135729474 2476 + pseudogene predicted gene 15019
Cpgi22948 X 135742524 to 135742726 202 CpG island CpG island 22948
Tssr162018 X 135742686 to 135742744 58 + TSS region transcription start site region 162018
Armcx5 X 135742733 to 135747322 4589 + protein coding gene armadillo repeat containing, X-linked 5
Gprasp1 X 135742733 to 135803474 60741 + protein coding gene G protein-coupled receptor associated sorting protein 1
Mir7646 X 135746716 to 135746769 53 + miRNA gene microRNA 7646
E430010N07Rik X 135763398 to 135766373 2975 unclassified gene RIKEN cDNA E430010N07 gene
Gm18614 X 135784341 to 135784910 569 + pseudogene predicted gene, 18614
Mir1970 X 135786114 to 135786217 103 - miRNA gene microRNA 1970
Tssr162019 X 135796113 to 135796164 51 + TSS region transcription start site region 162019
Tssr162020 X 135796217 to 135796251 34 + TSS region transcription start site region 162020
Tssr162021 X 135800894 to 135800905 11 + TSS region transcription start site region 162021
Tssr162022 X 135801184 to 135801196 12 + TSS region transcription start site region 162022
Gprasp2 X 135839034 to 135844730 5696 + protein coding gene G protein-coupled receptor associated sorting protein 2
Tssr162023 X 135839040 to 135839075 35 + TSS region transcription start site region 162023
Tssr162024 X 135839079 to 135839086 7 + TSS region transcription start site region 162024
Tssr162025 X 135839171 to 135839175 4 + TSS region transcription start site region 162025
Bhlhb9 X 135841639 to 135891081 49442 + protein coding gene basic helix-loop-helix domain containing, class B9
Tssr162026 X 135885860 to 135885897 37 + TSS region transcription start site region 162026
Cpgi22949 X 135885896 to 135886325 429 CpG island CpG island 22949
Tssr162027 X 135885903 to 135885943 40 + TSS region transcription start site region 162027
Tssr162028 X 135885949 to 135885978 29 + TSS region transcription start site region 162028
Tssr162029 X 135885986 to 135886019 33 + TSS region transcription start site region 162029
B930008F14Rik X 135910996 to 135915353 4357 unclassified gene RIKEN cDNA B930008F14 gene
Gm31214 X 135970767 to 135983650 12883 + lncRNA gene predicted gene, 31214
DXMit233 X 135981553 to 135981667 114 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 233
1110065H08Rik X 135982662 to 135983644 982 unclassified gene RIKEN cDNA 1110065H08 gene
Gm15016 X 135988547 to 135989266 719 + pseudogene predicted gene 15016
Arxes2 X 135993824 to 135995355 1531 + protein coding gene adipocyte-related X-chromosome expressed sequence 2
Arxes1 X 136033367 to 136034946 1579 + protein coding gene adipocyte-related X-chromosome expressed sequence 1
Tssr164176 X 136051207 to 136051218 11 - TSS region transcription start site region 164176
Bex2 X 136066565 to 136068236 1671 - protein coding gene brain expressed X-linked 2
Cpgi22950 X 136068199 to 136068392 193 CpG island CpG island 22950
Nxf3 X 136072099 to 136085255 13156 - protein coding gene nuclear RNA export factor 3
Tssr164177 X 136085168 to 136085173 5 - TSS region transcription start site region 164177
Tssr164178 X 136085196 to 136085204 8 - TSS region transcription start site region 164178
Tssr164179 X 136085206 to 136085250 44 - TSS region transcription start site region 164179
Tssr164180 X 136085386 to 136085403 17 - TSS region transcription start site region 164180
DXMit174 X 136088345 to 136088434 89 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 174
5730412P04Rik X 136104603 to 136115420 10817 + lncRNA gene RIKEN cDNA 5730412P04 gene
Tssr162030 X 136139000 to 136139009 9 + TSS region transcription start site region 162030
Tssr162031 X 136139039 to 136139053 14 + TSS region transcription start site region 162031
Bex4 X 136139045 to 136140439 1394 + protein coding gene brain expressed X-linked 4
Cpgi22951 X 136139363 to 136139699 336 CpG island CpG island 22951
Tssr162032 X 136139448 to 136139451 3 + TSS region transcription start site region 162032
DXMit38 X 136158013 to 136158148 135 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 38
Tceal8 X 136168984 to 136172251 3267 - protein coding gene transcription elongation factor A (SII)-like 8
Tssr164181 X 136170985 to 136171008 23 - TSS region transcription start site region 164181
Tssr164182 X 136172164 to 136172194 30 - TSS region transcription start site region 164182
Tssr164183 X 136172195 to 136172228 33 - TSS region transcription start site region 164183
Tssr164184 X 136172233 to 136172244 11 - TSS region transcription start site region 164184
Mir6383 X 136183245 to 136183360 115 + miRNA gene microRNA 6383
Gm41901 X 136189900 to 136200652 10752 - lncRNA gene predicted gene, 41901
n-TKctt19 X 136195732 to 136195804 72 - tRNA gene nuclear encoded tRNA lysine 19 (anticodon CTT)
Tceal5 X 136200948 to 136203851 2903 - protein coding gene transcription elongation factor A (SII)-like 5
Tssr162033 X 136201666 to 136201727 61 + TSS region transcription start site region 162033
Tssr164185 X 136203816 to 136203926 110 - TSS region transcription start site region 164185
Bex1 X 136213972 to 136215513 1541 - protein coding gene brain expressed X-linked 1
Tceal7 X 136214914 to 136226100 11186 + protein coding gene transcription elongation factor A (SII)-like 7
Cpgi22952 X 136215024 to 136215239 215 CpG island CpG island 22952
Tssr162034 X 136224035 to 136224053 18 + TSS region transcription start site region 162034
Tssr162035 X 136225543 to 136225555 12 + TSS region transcription start site region 162035
Gm39535 X 136242830 to 136244986 2156 - lncRNA gene predicted gene, 39535
Tssr162036 X 136245065 to 136245102 37 + TSS region transcription start site region 162036
Tceal9 X 136245080 to 136247139 2059 + protein coding gene transcription elongation factor A like 9
Tssr162037 X 136245117 to 136245175 58 + TSS region transcription start site region 162037
Cpgi22953 X 136269850 to 136270035 185 CpG island CpG island 22953
Bex3 X 136270253 to 136271978 1725 + protein coding gene brain expressed X-linked 3
Tssr162038 X 136270258 to 136270269 11 + TSS region transcription start site region 162038
Tssr162039 X 136270278 to 136270283 5 + TSS region transcription start site region 162039
Tssr162040 X 136270302 to 136270352 50 + TSS region transcription start site region 162040
Tssr162041 X 136271359 to 136271394 35 + TSS region transcription start site region 162041
Tssr164186 X 136271430 to 136271453 23 - TSS region transcription start site region 164186
Tssr162042 X 136271449 to 136271467 18 + TSS region transcription start site region 162042
Tssr162043 X 136271668 to 136271687 19 + TSS region transcription start site region 162043
n-R5s12 X 136277505 to 136277623 118 + rRNA gene nuclear encoded rRNA 5S 12
Nsa2-ps2 X 136328299 to 136329068 769 + pseudogene NSA2 ribosome biogenesis homolog, pseudogene 2
Gm14997 X 136329845 to 136330474 629 - pseudogene predicted gene 14997
Gm4917 X 136338065 to 136338711 646 + pseudogene predicted gene 4917
Tssr162044 X 136340053 to 136340073 20 + TSS region transcription start site region 162044
Gm7973 X 136340181 to 136340668 487 + pseudogene predicted gene 7973
Gm14994 X 136348185 to 136349266 1081 - pseudogene predicted gene 14994
Gm14999 X 136356655 to 136357278 623 - pseudogene predicted gene 14999
n-TAtgc2 X 136357602 to 136357673 71 + tRNA gene nuclear encoded tRNA alanine 2 (anticodon TGC)
Gm14998 X 136366756 to 136367250 494 + pseudogene predicted gene 14998
Gm14993 X 136367249 to 136367412 163 - pseudogene predicted gene 14993
n-TAcgc4 X 136367721 to 136367792 71 + tRNA gene nuclear encoded tRNA alanine 4 (anticodon CGC)
n-TAcgc7 X 136379366 to 136379437 71 - tRNA gene nuclear encoded tRNA alanine 7 (anticodon CGC)
Gm14992 X 136379912 to 136380423 511 - pseudogene predicted gene 14992
n-TAtgc6 X 136380747 to 136380818 71 + tRNA gene nuclear encoded tRNA alanine 6 (anticodon TGC)
n-TAcgc6 X 136395522 to 136395593 71 - tRNA gene nuclear encoded tRNA alanine 6 (anticodon CGC)
Gm14996 X 136396068 to 136396579 511 - pseudogene predicted gene 14996
n-TAtgc7 X 136396904 to 136396975 71 + tRNA gene nuclear encoded tRNA alanine 7 (anticodon TGC)
n-TAcgc5 X 136401868 to 136401939 71 + tRNA gene nuclear encoded tRNA alanine 5 (anticodon CGC)
n-TAtgc4 X 136430365 to 136430436 71 - tRNA gene nuclear encoded tRNA alanine 4 (anticodon TGC)
Gm14990 X 136430731 to 136431175 444 + pseudogene predicted gene 14990
Gm14995 X 136438151 to 136438541 390 - pseudogene predicted gene 14995
Kir3dl2 X 136448107 to 136544056 95949 - protein coding gene killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2
Gm14991 X 136486970 to 136488884 1914 + pseudogene predicted gene 14991
Kir3dl1 X 136517999 to 136534306 16307 + protein coding gene killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1
Gm15006 X 136544874 to 136545995 1121 + pseudogene predicted gene 15006
Gm15003 X 136552985 to 136553430 445 - pseudogene predicted gene 15003
n-TAtgc3 X 136553725 to 136553796 71 + tRNA gene nuclear encoded tRNA alanine 3 (anticodon TGC)
n-TAcgc2 X 136567865 to 136567936 71 - tRNA gene nuclear encoded tRNA alanine 2 (anticodon CGC)
Gm15005 X 136568411 to 136568922 511 - pseudogene predicted gene 15005
n-TAtgc8 X 136569246 to 136569317 71 + tRNA gene nuclear encoded tRNA alanine 8 (anticodon TGC)
n-TAcgc1 X 136569763 to 136569835 72 + tRNA gene nuclear encoded tRNA alanine 1 (anticodon CGC)
Gm15004 X 136583864 to 136584493 629 - pseudogene predicted gene 15004
n-TAtgc1 X 136590365 to 136590436 71 + tRNA gene nuclear encoded tRNA alanine 1 (anticodon TGC)
Tssr162045 X 136590841 to 136590866 25 + TSS region transcription start site region 162045
Tceal3 X 136590844 to 136668377 77533 + protein coding gene transcription elongation factor A (SII)-like 3
Dp(XTceal3-Plp1)1Gmh X 136590844 to 136838582 247738 chromosomal duplication duplication 1, Grace Hobson
Tssr162046 X 136666387 to 136666479 92 + TSS region transcription start site region 162046
Gm15010 X 136701246 to 136701652 406 - pseudogene predicted gene 15010