Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:134091387-139241479

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459 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nox1 X 134086421 to 134137711 51290 - protein coding gene NADPH oxidase 1
Tssr164131 X 134111766 to 134111788 22 - TSS region transcription start site region 164131
Tssr164132 X 134111806 to 134111814 8 - TSS region transcription start site region 164132
Tssr164133 X 134111826 to 134111836 10 - TSS region transcription start site region 164133
Tssr164134 X 134111852 to 134111873 21 - TSS region transcription start site region 164134
Xkrx X 134149043 to 134162076 13033 - protein coding gene X-linked Kx blood group related, X-linked
Tssr164135 X 134162476 to 134162495 19 - TSS region transcription start site region 164135
Tssr164136 X 134162505 to 134162512 7 - TSS region transcription start site region 164136
Tssr164137 X 134162948 to 134162966 18 - TSS region transcription start site region 164137
Tssr164138 X 134162977 to 134162998 21 - TSS region transcription start site region 164138
Tssr161989 X 134187492 to 134187503 11 + TSS region transcription start site region 161989
Arl13a X 134187501 to 134208028 20527 + protein coding gene ADP-ribosylation factor-like 13A
Tssr161990 X 134187505 to 134187513 8 + TSS region transcription start site region 161990
Trmt2b X 134222955 to 134277026 54071 - protein coding gene TRM2 tRNA methyltransferase 2B
Tssr164139 X 134276888 to 134276968 80 - TSS region transcription start site region 164139
Tssr164140 X 134276969 to 134276980 11 - TSS region transcription start site region 164140
Tmem35a X 134295225 to 134305969 10744 + protein coding gene transmembrane protein 35A
Tssr161991 X 134295382 to 134295404 22 + TSS region transcription start site region 161991
Cpgi22937 X 134307913 to 134308257 344 CpG island CpG island 22937
Cenpi X 134308084 to 134362639 54555 + protein coding gene centromere protein I
Tssr161992 X 134308139 to 134308209 70 + TSS region transcription start site region 161992
Tssr161993 X 134404543 to 134404589 46 + TSS region transcription start site region 161993
Drp2 X 134404628 to 134456574 51946 + protein coding gene dystrophin related protein 2
Tssr161994 X 134404808 to 134404897 89 + TSS region transcription start site region 161994
Tssr161995 X 134425221 to 134425236 15 + TSS region transcription start site region 161995
Tssr161996 X 134427019 to 134427029 10 + TSS region transcription start site region 161996
Tssr161997 X 134427035 to 134427054 19 + TSS region transcription start site region 161997
Tssr161998 X 134427056 to 134427079 23 + TSS region transcription start site region 161998
Taf7l X 134460118 to 134476490 16372 - protein coding gene TATA-box binding protein associated factor 7 like
Tssr161999 X 134465976 to 134465979 3 + TSS region transcription start site region 161999
Cpgi22938 X 134474982 to 134476245 1263 CpG island CpG island 22938
Tssr164141 X 134474986 to 134475016 30 - TSS region transcription start site region 164141
Tssr164142 X 134476479 to 134476495 16 - TSS region transcription start site region 164142
Cpgi22939 X 134489016 to 134489179 163 CpG island CpG island 22939
Gm16410 X 134489370 to 134490143 773 + pseudogene predicted gene 16410
Gm23124 X 134496810 to 134496916 106 + snRNA gene predicted gene, 23124
Timm8a1 X 134537256 to 134541670 4414 - protein coding gene translocase of inner mitochondrial membrane 8A1
Cpgi22940 X 134541170 to 134541969 799 CpG island CpG island 22940
Tssr164143 X 134541666 to 134541672 6 - TSS region transcription start site region 164143
Tssr164144 X 134541847 to 134541900 53 - TSS region transcription start site region 164144
Btk X 134542336 to 134583570 41234 - protein coding gene Bruton agammaglobulinemia tyrosine kinase
Gm15154 X 134551882 to 134552247 365 + pseudogene predicted gene 15154
Tssr164145 X 134556132 to 134556133 1 - TSS region transcription start site region 164145
Tssr5681 X 134583077 to 134583088 11 - TSS region transcription start site region 5681
Tssr164146 X 134583114 to 134583149 35 - TSS region transcription start site region 164146
Tssr164147 X 134583567 to 134583581 14 - TSS region transcription start site region 164147
Cpgi22941 X 134585402 to 134586048 646 CpG island CpG island 22941
Tssr162000 X 134585644 to 134585698 54 + TSS region transcription start site region 162000
Rpl36a X 134585654 to 134588062 2408 + protein coding gene ribosomal protein L36A
Tssr162001 X 134585708 to 134585717 9 + TSS region transcription start site region 162001
Gla X 134588169 to 134601005 12836 - protein coding gene galactosidase, alpha
Tssr164148 X 134589996 to 134590008 12 - TSS region transcription start site region 164148
Tssr164149 X 134595231 to 134595243 12 - TSS region transcription start site region 164149
Tssr164150 X 134600253 to 134600301 48 - TSS region transcription start site region 164150
Tssr164151 X 134600304 to 134600334 30 - TSS region transcription start site region 164151
Tssr164152 X 134600928 to 134600965 37 - TSS region transcription start site region 164152
Tssr164153 X 134600976 to 134600990 14 - TSS region transcription start site region 164153
Cpgi22942 X 134601076 to 134601496 420 CpG island CpG island 22942
Tssr164154 X 134601141 to 134601155 14 - TSS region transcription start site region 164154
Hnrnph2 X 134601179 to 134607060 5881 + protein coding gene heterogeneous nuclear ribonucleoprotein H2
Tssr162002 X 134601211 to 134601266 55 + TSS region transcription start site region 162002
Tssr162003 X 134601272 to 134601281 9 + TSS region transcription start site region 162003
Tssr164155 X 134601508 to 134601513 5 - TSS region transcription start site region 164155
Gm7855 X 134625058 to 134625744 686 - pseudogene predicted gene 7855
Cpgi22943 X 134625979 to 134626160 181 CpG island CpG island 22943
Bw3 X 134639291 to 166515599 31876308 QTL body weight QTL 3
DXMit3 X 134639291 to 134639466 175 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 3
Gm19502 X 134649743 to 134650816 1073 - pseudogene predicted gene, 19502
DXMit129 X 134651398 to 134651538 140 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 129
Tssr162004 X 134681469 to 134681492 23 + TSS region transcription start site region 162004
Gm7857 X 134681520 to 134681877 357 + pseudogene predicted gene 7857
B230119M05Rik X 134684562 to 134686462 1900 - lncRNA gene RIKEN cDNA B230119M05 gene
Tssr162005 X 134685117 to 134685149 32 + TSS region transcription start site region 162005
Tssr162006 X 134685161 to 134685179 18 + TSS region transcription start site region 162006
Tssr162007 X 134685208 to 134685258 50 + TSS region transcription start site region 162007
Cpgi22944 X 134686339 to 134686734 395 CpG island CpG island 22944
Armcx4 X 134686519 to 134696757 10238 + protein coding gene armadillo repeat containing, X-linked 4
Tssr162008 X 134686528 to 134686536 8 + TSS region transcription start site region 162008
Tssr162009 X 134686548 to 134686569 21 + TSS region transcription start site region 162009
Tssr162010 X 134687090 to 134687106 16 + TSS region transcription start site region 162010
DXErtd573e X 134697508 to 134697756 248 DNA segment DNA segment, Chr X, ERATO Doi 573, expressed
Tssr162011 X 134717914 to 134717920 6 + TSS region transcription start site region 162011
Tssr162012 X 134717930 to 134717941 11 + TSS region transcription start site region 162012
Tssr162013 X 134717943 to 134718018 75 + TSS region transcription start site region 162013
Armcx1 X 134717963 to 134721917 3954 + protein coding gene armadillo repeat containing, X-linked 1
Gm39534 X 134723285 to 134729919 6634 + lncRNA gene predicted gene, 39534
Gm16397 X 134731571 to 134732064 493 + pseudogene predicted pseudogene 16397
Gm10344 X 134745495 to 134746913 1418 - unclassified gene predicted gene 10344
Armcx6 X 134748461 to 134751417 2956 - protein coding gene armadillo repeat containing, X-linked 6
Tssr164156 X 134751370 to 134751424 54 - TSS region transcription start site region 164156
Tssr162014 X 134756563 to 134756617 54 + TSS region transcription start site region 162014
Armcx3 X 134756595 to 134761455 4860 + protein coding gene armadillo repeat containing, X-linked 3
Mir7093 X 134757631 to 134757731 100 + miRNA gene microRNA 7093
Armcx2 X 134804145 to 134809221 5076 - protein coding gene armadillo repeat containing, X-linked 2
Tssr164157 X 134806649 to 134806681 32 - TSS region transcription start site region 164157
Tssr164158 X 134808984 to 134809002 18 - TSS region transcription start site region 164158
Gm7222 X 134828140 to 134829045 905 - pseudogene predicted gene 7222
Gm15018 X 134906002 to 134906622 620 - pseudogene predicted gene 15018
Del(XNxf2-Nxf3)1Jw X 134944526 to 136085255 1140729 chromosomal deletion deletion, Chr X, Jeremy Wang 1
Nxf2 X 134944526 to 134964754 20228 - protein coding gene nuclear RNA export factor 2
Cpgi22945 X 134963697 to 134964017 320 CpG island CpG island 22945
Tssr164159 X 134964695 to 134964726 31 - TSS region transcription start site region 164159
Tssr164160 X 134964742 to 134964767 25 - TSS region transcription start site region 164160
Zmat1 X 134971372 to 135009209 37837 - protein coding gene zinc finger, matrin type 1
Tssr164161 X 134973136 to 134973147 11 - TSS region transcription start site region 164161
Cpgi22946 X 135008759 to 135009378 619 CpG island CpG island 22946
Tssr162015 X 135008843 to 135008857 14 + TSS region transcription start site region 162015
Tssr164162 X 135009192 to 135009225 33 - TSS region transcription start site region 164162
Tssr164163 X 135009226 to 135009236 10 - TSS region transcription start site region 164163
3632454L22Rik X 135022734 to 135060336 37602 - lncRNA gene RIKEN cDNA 3632454L22 gene
Tssr164164 X 135025307 to 135025344 37 - TSS region transcription start site region 164164
Cpgi22947 X 135035876 to 135036180 304 CpG island CpG island 22947
Tssr164165 X 135036078 to 135036090 12 - TSS region transcription start site region 164165
Tssr164166 X 135036091 to 135036099 8 - TSS region transcription start site region 164166
Gm6207 X 135119960 to 135122983 3023 - pseudogene predicted gene 6207
Gm15020 X 135122878 to 135152596 29718 - unclassified non-coding RNA gene predicted gene 15020
Gm25868 X 135165848 to 135165961 113 + snoRNA gene predicted gene, 25868
Gm15023 X 135167624 to 135177632 10008 - protein coding gene predicted gene 15023
Tceal6 X 135208687 to 135210687 2000 - protein coding gene transcription elongation factor A (SII)-like 6
Tssr164167 X 135210605 to 135210612 7 - TSS region transcription start site region 164167
Tssr164168 X 135210621 to 135210630 9 - TSS region transcription start site region 164168
Tssr164169 X 135210640 to 135210661 21 - TSS region transcription start site region 164169
Tssr164170 X 135210672 to 135210700 28 - TSS region transcription start site region 164170
Tssr164171 X 135210765 to 135210789 24 - TSS region transcription start site region 164171
Gm15022 X 135240154 to 135240899 745 + pseudogene predicted gene 15022
Tssr162016 X 135263307 to 135263316 9 + TSS region transcription start site region 162016
Pramel X 135270853 to 135274214 3361 + pseudogene preferentially expressed antigen in melanoma-like
Pramel3 X 135302307 to 135312652 10345 + protein coding gene preferentially expressed antigen in melanoma-like 3
Gm25936 X 135314316 to 135314429 113 - snoRNA gene predicted gene, 25936
Gm15017 X 135329761 to 135349127 19366 + unclassified non-coding RNA gene predicted gene 15017
Gm6215 X 135349021 to 135352020 2999 + pseudogene predicted pseudogene 6215
Gm5128 X 135373284 to 135383393 10109 + protein coding gene predicted gene 5128
Gm22006 X 135384915 to 135385028 113 - snoRNA gene predicted gene, 22006
Gm6221 X 135409856 to 135412952 3096 + pseudogene predicted pseudogene 6221
Gm7903 X 135433835 to 135443830 9995 + protein coding gene predicted gene 7903
Gm24416 X 135445519 to 135445632 113 - snoRNA gene predicted gene, 24416
Gm7905 X 135470455 to 135473527 3072 + pseudogene predicted pseudogene 7905
AV320801 X 135494588 to 135504594 10006 + protein coding gene expressed sequence AV320801
Gm22233 X 135506257 to 135506370 113 - snoRNA gene predicted gene, 22233
Gm15015 X 135519591 to 135549316 29725 + unclassified non-coding RNA gene predicted gene 15015
Gm6228 X 135549209 to 135552220 3011 + pseudogene predicted gene 6228
Nxf7 X 135579555 to 135598777 19222 - protein coding gene nuclear RNA export factor 7
Tssr164172 X 135598778 to 135598786 8 - TSS region transcription start site region 164172
Prame X 135613002 to 135627705 14703 - protein coding gene preferentially expressed antigen in melanoma
Gm15021 X 135615994 to 135616732 738 + pseudogene predicted gene 15021
Tssr164173 X 135627682 to 135627693 11 - TSS region transcription start site region 164173
Tcp11x2 X 135654698 to 135693790 39092 - protein coding gene t-complex 11 family, X-linked 2
Tssr164174 X 135693783 to 135693795 12 - TSS region transcription start site region 164174
Tssr162017 X 135707173 to 135707174 1 + TSS region transcription start site region 162017
Tmsb15a X 135718667 to 135725261 6594 - protein coding gene thymosin beta 15a
Tssr164175 X 135720627 to 135720641 14 - TSS region transcription start site region 164175
Gm15019 X 135726998 to 135729474 2476 + pseudogene predicted gene 15019
Cpgi22948 X 135742524 to 135742726 202 CpG island CpG island 22948
Tssr162018 X 135742686 to 135742744 58 + TSS region transcription start site region 162018
Gprasp1 X 135742733 to 135803474 60741 + protein coding gene G protein-coupled receptor associated sorting protein 1
Armcx5 X 135742733 to 135747322 4589 + protein coding gene armadillo repeat containing, X-linked 5
Mir7646 X 135746716 to 135746769 53 + miRNA gene microRNA 7646
E430010N07Rik X 135763398 to 135766373 2975 unclassified gene RIKEN cDNA E430010N07 gene
Gm18614 X 135784341 to 135784910 569 + pseudogene predicted gene, 18614
Mir1970 X 135786114 to 135786217 103 - miRNA gene microRNA 1970
Tssr162019 X 135796113 to 135796164 51 + TSS region transcription start site region 162019
Tssr162020 X 135796217 to 135796251 34 + TSS region transcription start site region 162020
Tssr162021 X 135800894 to 135800905 11 + TSS region transcription start site region 162021
Tssr162022 X 135801184 to 135801196 12 + TSS region transcription start site region 162022
Gprasp2 X 135839034 to 135844730 5696 + protein coding gene G protein-coupled receptor associated sorting protein 2
Tssr162023 X 135839040 to 135839075 35 + TSS region transcription start site region 162023
Tssr162024 X 135839079 to 135839086 7 + TSS region transcription start site region 162024
Tssr162025 X 135839171 to 135839175 4 + TSS region transcription start site region 162025
Bhlhb9 X 135841639 to 135891081 49442 + protein coding gene basic helix-loop-helix domain containing, class B9
Tssr162026 X 135885860 to 135885897 37 + TSS region transcription start site region 162026
Cpgi22949 X 135885896 to 135886325 429 CpG island CpG island 22949
Tssr162027 X 135885903 to 135885943 40 + TSS region transcription start site region 162027
Tssr162028 X 135885949 to 135885978 29 + TSS region transcription start site region 162028
Tssr162029 X 135885986 to 135886019 33 + TSS region transcription start site region 162029
B930008F14Rik X 135910996 to 135915353 4357 unclassified gene RIKEN cDNA B930008F14 gene
Gm31214 X 135970767 to 135983650 12883 + lncRNA gene predicted gene, 31214
DXMit233 X 135981553 to 135981667 114 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 233
1110065H08Rik X 135982662 to 135983644 982 unclassified gene RIKEN cDNA 1110065H08 gene
Gm15016 X 135988547 to 135989266 719 + pseudogene predicted gene 15016
Arxes2 X 135993824 to 135995355 1531 + protein coding gene adipocyte-related X-chromosome expressed sequence 2
Arxes1 X 136033367 to 136034946 1579 + protein coding gene adipocyte-related X-chromosome expressed sequence 1
Tssr164176 X 136051207 to 136051218 11 - TSS region transcription start site region 164176
Bex2 X 136066565 to 136068236 1671 - protein coding gene brain expressed X-linked 2
Cpgi22950 X 136068199 to 136068392 193 CpG island CpG island 22950
Nxf3 X 136072099 to 136085255 13156 - protein coding gene nuclear RNA export factor 3
Tssr164177 X 136085168 to 136085173 5 - TSS region transcription start site region 164177
Tssr164178 X 136085196 to 136085204 8 - TSS region transcription start site region 164178
Tssr164179 X 136085206 to 136085250 44 - TSS region transcription start site region 164179
Tssr164180 X 136085386 to 136085403 17 - TSS region transcription start site region 164180
DXMit174 X 136088345 to 136088434 89 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 174
5730412P04Rik X 136104603 to 136115420 10817 + lncRNA gene RIKEN cDNA 5730412P04 gene
Tssr162030 X 136139000 to 136139009 9 + TSS region transcription start site region 162030
Tssr162031 X 136139039 to 136139053 14 + TSS region transcription start site region 162031
Bex4 X 136139045 to 136140439 1394 + protein coding gene brain expressed X-linked 4
Cpgi22951 X 136139363 to 136139699 336 CpG island CpG island 22951
Tssr162032 X 136139448 to 136139451 3 + TSS region transcription start site region 162032
DXMit38 X 136158013 to 136158148 135 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 38
Tceal8 X 136168984 to 136172251 3267 - protein coding gene transcription elongation factor A (SII)-like 8
Tssr164181 X 136170985 to 136171008 23 - TSS region transcription start site region 164181
Tssr164182 X 136172164 to 136172194 30 - TSS region transcription start site region 164182