Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:133569137-134549213

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcdh19 X 133582860 to 133688987 106127 - protein coding gene protocadherin 19
Cpgi22933 X 133588017 to 133588306 289 CpG island CpG island 22933
Cpgi22934 X 133686087 to 133689082 2995 CpG island CpG island 22934
Gm26851 X 133687780 to 133707262 19482 + lincRNA gene predicted gene, 26851
Tssr164113 X 133688978 to 133689005 27 - TSS region transcription start site region 164113
Tssr164114 X 133689007 to 133689016 9 - TSS region transcription start site region 164114
Tssr164115 X 133689046 to 133689055 9 - TSS region transcription start site region 164115
Cpgi22935 X 133689965 to 133690131 166 CpG island CpG island 22935
DXMit130 X 133764173 to 133764341 168 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 130
Stol X 133764341 to 66047855 -67716486 heritable phenotypic marker stripy oily
Tnmd X 133851008 to 133865577 14569 + protein coding gene tenomodulin
Tssr161977 X 133851115 to 133851129 14 + TSS region transcription start site region 161977
Tssr161978 X 133859691 to 133859706 15 + TSS region transcription start site region 161978
Tspan6 X 133891068 to 133898429 7361 - protein coding gene tetraspanin 6
Tssr164116 X 133898292 to 133898377 85 - TSS region transcription start site region 164116
Tssr164117 X 133898399 to 133898413 14 - TSS region transcription start site region 164117
4930570D08Rik X 133898699 to 133901213 2514 - unclassified gene RIKEN cDNA 4930570D08 gene
Tssr164118 X 133900173 to 133900198 25 - TSS region transcription start site region 164118
Tssr164119 X 133901209 to 133901219 10 - TSS region transcription start site region 164119
Tssr161979 X 133908418 to 133908430 12 + TSS region transcription start site region 161979
Srpx2 X 133908426 to 133932446 24020 + protein coding gene sushi-repeat-containing protein, X-linked 2
Tssr161980 X 133908441 to 133908462 21 + TSS region transcription start site region 161980
Tssr161981 X 133908474 to 133908481 7 + TSS region transcription start site region 161981
Tssr161982 X 133908606 to 133908634 28 + TSS region transcription start site region 161982
Tssr161983 X 133908635 to 133908658 23 + TSS region transcription start site region 161983
Tssr161984 X 133908667 to 133908709 42 + TSS region transcription start site region 161984
Sytl4 X 133936385 to 133981812 45427 - protein coding gene synaptotagmin-like 4
Tssr164120 X 133960726 to 133960755 29 - TSS region transcription start site region 164120
Tssr164121 X 133961627 to 133961649 22 - TSS region transcription start site region 164121
Tssr164122 X 133961674 to 133961677 3 - TSS region transcription start site region 164122
Tssr164123 X 133961721 to 133961730 9 - TSS region transcription start site region 164123
Tssr164124 X 133961747 to 133961754 7 - TSS region transcription start site region 164124
Tssr164125 X 133961760 to 133961761 1 - TSS region transcription start site region 164125
Tssr164126 X 133961772 to 133961775 3 - TSS region transcription start site region 164126
Tssr164127 X 133961833 to 133961854 21 - TSS region transcription start site region 164127
Tssr164128 X 133981707 to 133981719 12 - TSS region transcription start site region 164128
Tssr164129 X 133981722 to 133981754 32 - TSS region transcription start site region 164129
Tssr164130 X 133981765 to 133981812 47 - TSS region transcription start site region 164130
Gm7841 X 134053615 to 134054473 858 - pseudogene predicted gene 7841
Cpgi22936 X 134058982 to 134059876 894 CpG island CpG island 22936
Tssr161985 X 134059108 to 134059112 4 + TSS region transcription start site region 161985
Tssr161986 X 134059137 to 134059213 76 + TSS region transcription start site region 161986
Cstf2 X 134059187 to 134086819 27632 + protein coding gene cleavage stimulation factor, 3' pre-RNA subunit 2
Tssr161987 X 134059261 to 134059272 11 + TSS region transcription start site region 161987
Tssr161988 X 134059315 to 134059366 51 + TSS region transcription start site region 161988
Mir3112 X 134075316 to 134075397 81 + miRNA gene microRNA 3112
9330119M13Rik X 134076787 to 134079680 2893 unclassified non-coding RNA gene RIKEN cDNA 9330119M13 gene
Nox1 X 134086421 to 134137711 51290 - protein coding gene NADPH oxidase 1
Tssr164131 X 134111766 to 134111788 22 - TSS region transcription start site region 164131
Tssr164132 X 134111806 to 134111814 8 - TSS region transcription start site region 164132
Tssr164133 X 134111826 to 134111836 10 - TSS region transcription start site region 164133
Tssr164134 X 134111852 to 134111873 21 - TSS region transcription start site region 164134
Xkrx X 134149043 to 134162076 13033 - protein coding gene X-linked Kx blood group related, X-linked
Tssr164135 X 134162476 to 134162495 19 - TSS region transcription start site region 164135
Tssr164136 X 134162505 to 134162512 7 - TSS region transcription start site region 164136
Tssr164137 X 134162948 to 134162966 18 - TSS region transcription start site region 164137
Tssr164138 X 134162977 to 134162998 21 - TSS region transcription start site region 164138
Tssr161989 X 134187492 to 134187503 11 + TSS region transcription start site region 161989
Arl13a X 134187501 to 134208028 20527 + protein coding gene ADP-ribosylation factor-like 13A
Tssr161990 X 134187505 to 134187513 8 + TSS region transcription start site region 161990
Trmt2b X 134222955 to 134277026 54071 - protein coding gene TRM2 tRNA methyltransferase 2B
Tssr164139 X 134276888 to 134276968 80 - TSS region transcription start site region 164139
Tssr164140 X 134276969 to 134276980 11 - TSS region transcription start site region 164140
Tmem35a X 134295225 to 134305969 10744 + protein coding gene transmembrane protein 35A
Tssr161991 X 134295382 to 134295404 22 + TSS region transcription start site region 161991
Cpgi22937 X 134307913 to 134308257 344 CpG island CpG island 22937
Cenpi X 134308084 to 134362639 54555 + protein coding gene centromere protein I
Tssr161992 X 134308139 to 134308209 70 + TSS region transcription start site region 161992
Tssr161993 X 134404543 to 134404589 46 + TSS region transcription start site region 161993
Drp2 X 134404628 to 134456574 51946 + protein coding gene dystrophin related protein 2
Tssr161994 X 134404808 to 134404897 89 + TSS region transcription start site region 161994
Tssr161995 X 134425221 to 134425236 15 + TSS region transcription start site region 161995
Tssr161996 X 134427019 to 134427029 10 + TSS region transcription start site region 161996
Tssr161997 X 134427035 to 134427054 19 + TSS region transcription start site region 161997
Tssr161998 X 134427056 to 134427079 23 + TSS region transcription start site region 161998
Taf7l X 134460118 to 134476490 16372 - protein coding gene TATA-box binding protein associated factor 7 like
Tssr161999 X 134465976 to 134465979 3 + TSS region transcription start site region 161999
Cpgi22938 X 134474982 to 134476245 1263 CpG island CpG island 22938
Tssr164141 X 134474986 to 134475016 30 - TSS region transcription start site region 164141
Tssr164142 X 134476479 to 134476495 16 - TSS region transcription start site region 164142
Cpgi22939 X 134489016 to 134489179 163 CpG island CpG island 22939
Gm16410 X 134489370 to 134490143 773 + pseudogene predicted gene 16410
Gm23124 X 134496810 to 134496916 106 + snRNA gene predicted gene, 23124
Timm8a1 X 134537256 to 134541670 4414 - protein coding gene translocase of inner mitochondrial membrane 8A1
Cpgi22940 X 134541170 to 134541969 799 CpG island CpG island 22940
Tssr164143 X 134541666 to 134541672 6 - TSS region transcription start site region 164143
Tssr164144 X 134541847 to 134541900 53 - TSS region transcription start site region 164144
Btk X 134542336 to 134583570 41234 - protein coding gene Bruton agammaglobulinemia tyrosine kinase