Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:13123572-14123575

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp9x X 13071498 to 13173328 101830 + protein coding gene ubiquitin specific peptidase 9, X chromosome
Tssr160587 X 13159831 to 13159860 29 + TSS region transcription start site region 160587
Gm15027 X 13179443 to 13179580 137 + pseudogene predicted gene 15027
Gm14536 X 13189538 to 13189675 137 + pseudogene predicted gene 14536
Tssr160588 X 13202542 to 13202546 4 + TSS region transcription start site region 160588
Rpl3-ps1 X 13202571 to 13203780 1209 + pseudogene ribosomal protein L3, pseudogene 1
Tssr160589 X 13202601 to 13202619 18 + TSS region transcription start site region 160589
DXMit187 X 13212401 to 13212524 123 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 187
n-R5s3 X 13215698 to 13215809 111 - rRNA gene nuclear encoded rRNA 5S 3
Llph-ps2 X 13218210 to 13218602 392 - pseudogene LLP homolog, pseudogene 2
Tssr163014 X 13218620 to 13218656 36 - TSS region transcription start site region 163014
DXErtd11e X 13220718 to 13220940 222 DNA segment DNA segment, Chr X, ERATO Doi 11, expressed
2010308F09Rik X 13234641 to 13247733 13092 - lincRNA gene RIKEN cDNA 2010308F09 gene
Gm16481 X 13238327 to 13239550 1223 + pseudogene predicted gene 16481
Tssr160590 X 13256683 to 13256712 29 + TSS region transcription start site region 160590
Cpgi22633 X 13280799 to 13282249 1450 CpG island CpG island 22633
Ddx3x X 13280970 to 13294052 13082 + protein coding gene DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
Tssr160591 X 13281013 to 13281031 18 + TSS region transcription start site region 160591
Tssr160592 X 13284170 to 13284192 22 + TSS region transcription start site region 160592
Tssr160593 X 13284918 to 13284922 4 + TSS region transcription start site region 160593
Tssr160594 X 13287238 to 13287253 15 + TSS region transcription start site region 160594
Tssr160595 X 13289430 to 13289447 17 + TSS region transcription start site region 160595
Tssr160596 X 13291477 to 13291493 16 + TSS region transcription start site region 160596
Tssr160597 X 13297589 to 13297600 11 + TSS region transcription start site region 160597
Tssr160598 X 13302254 to 13302267 13 + TSS region transcription start site region 160598
Gm5380 X 13302285 to 13304417 2132 + pseudogene predicted gene 5380
Gm7129 X 13326023 to 13327019 996 - pseudogene predicted gene 7129
Gm34661 X 13343546 to 13348150 4604 - lncRNA gene predicted gene, 34661
Tssr163015 X 13345306 to 13345322 16 - TSS region transcription start site region 163015
Tssr5595 X 13358265 to 13358274 9 + TSS region transcription start site region 5595
Gm9434 X 13377866 to 13378678 812 - pseudogene predicted gene 9434
Gm4728 X 13392032 to 13392827 795 + pseudogene predicted gene 4728
DXMit85 X 13398815 to 13398952 137 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 85
Gm18106 X 13400384 to 13403623 3239 - pseudogene predicted gene, 18106
Tssr160599 X 13422358 to 13422366 8 + TSS region transcription start site region 160599
DXMit52 X 13459838 to 13459965 127 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 52
Cpgi22634 X 13461618 to 13462104 486 CpG island CpG island 22634
Nyx X 13466110 to 13489313 23203 + protein coding gene nyctalopin
Cpgi22635 X 13485900 to 13487042 1142 CpG island CpG island 22635
Gm14506 X 13490498 to 13491033 535 - pseudogene predicted gene 14506
UL107 X 13506220 to 13506440 220 DNA segment DNA segment, UL107
Cask X 13517080 to 13846784 329704 - protein coding gene calcium/calmodulin-dependent serine protein kinase (MAGUK family)
Tssr163016 X 13518935 to 13518936 1 - TSS region transcription start site region 163016
Tssr163017 X 13524181 to 13524182 1 - TSS region transcription start site region 163017
Gm34836 X 13569631 to 13586837 17206 + lncRNA gene predicted gene, 34836
Tssr160600 X 13622914 to 13622932 18 + TSS region transcription start site region 160600
Tssr160601 X 13623385 to 13623395 10 + TSS region transcription start site region 160601
Tssr160602 X 13623557 to 13623566 9 + TSS region transcription start site region 160602
Tssr160603 X 13623572 to 13623575 3 + TSS region transcription start site region 160603
Tssr160604 X 13632082 to 13632136 54 + TSS region transcription start site region 160604
Gpr34 X 13632089 to 13640858 8769 + protein coding gene G protein-coupled receptor 34
Tssr160605 X 13632780 to 13632798 18 + TSS region transcription start site region 160605
Gm25246 X 13653381 to 13653449 68 + miRNA gene predicted gene, 25246
Tssr160606 X 13661331 to 13661343 12 + TSS region transcription start site region 160606
Tssr160607 X 13661354 to 13661366 12 + TSS region transcription start site region 160607
Gpr82 X 13661363 to 13667433 6070 + protein coding gene G protein-coupled receptor 82
Tssr160608 X 13662331 to 13662343 12 + TSS region transcription start site region 160608
Tssr160609 X 13669067 to 13669102 35 + TSS region transcription start site region 160609
Cpgi22636 X 13845591 to 13847141 1550 CpG island CpG island 22636
Tssr163018 X 13846475 to 13846493 18 - TSS region transcription start site region 163018
Tssr163019 X 13846508 to 13846591 83 - TSS region transcription start site region 163019
Tssr163020 X 13846629 to 13846640 11 - TSS region transcription start site region 163020
Tssr163021 X 13846746 to 13846769 23 - TSS region transcription start site region 163021
n-TQttg1 X 13859166 to 13859237 71 - tRNA gene nuclear encoded tRNA glutamine 1 (anticodon TTG)
Gm5381 X 13927287 to 13929204 1917 - pseudogene predicted gene 5381
Gm25552 X 13985385 to 13985475 90 - snRNA gene predicted gene, 25552