Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:12937005-13147051

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi22630 X 12936870 to 12937256 386 CpG island CpG island 22630
AA414768 X 12936872 to 12938128 1256 + pseudogene expressed sequence AA414768
Gm14534 X 12944610 to 12944966 356 - pseudogene predicted gene 14534
Tssr163007 X 12954717 to 12954722 5 - TSS region transcription start site region 163007
Gm41890 X 12967588 to 12994484 26896 - lncRNA gene predicted gene, 41890
4930500G05Rik X 12977854 to 12994980 17126 + lncRNA gene RIKEN cDNA 4930500G05 gene
Tssr160574 X 12977856 to 12977893 37 + TSS region transcription start site region 160574
Tssr163008 X 12994521 to 12994530 9 - TSS region transcription start site region 163008
Tssr163009 X 12994553 to 12994562 9 - TSS region transcription start site region 163009
Tssr163010 X 12994645 to 12994654 9 - TSS region transcription start site region 163010
Tssr163011 X 13014143 to 13014187 44 - TSS region transcription start site region 163011
Gm1549 X 13028060 to 13028276 216 unclassified gene predicted gene 1549
Cpgi22631 X 13041675 to 13042078 403 CpG island CpG island 22631
Tssr160575 X 13041799 to 13041836 37 + TSS region transcription start site region 160575
Tssr160576 X 13041838 to 13041852 14 + TSS region transcription start site region 160576
Tssr160577 X 13042005 to 13042051 46 + TSS region transcription start site region 160577
5730405O15Rik X 13042015 to 13045295 3280 + lncRNA gene RIKEN cDNA 5730405O15 gene
Cpgi22632 X 13070915 to 13073087 2172 CpG island CpG island 22632
Tssr160578 X 13071059 to 13071082 23 + TSS region transcription start site region 160578
Tssr160579 X 13071146 to 13071169 23 + TSS region transcription start site region 160579
Tssr160580 X 13071261 to 13071297 36 + TSS region transcription start site region 160580
Tssr160581 X 13071470 to 13071499 29 + TSS region transcription start site region 160581
Usp9x X 13071498 to 13173328 101830 + protein coding gene ubiquitin specific peptidase 9, X chromosome
Tssr160582 X 13071500 to 13071576 76 + TSS region transcription start site region 160582
Tssr160583 X 13071624 to 13071663 39 + TSS region transcription start site region 160583
Tssr163012 X 13071924 to 13071929 5 - TSS region transcription start site region 163012
Tssr160584 X 13071999 to 13072039 40 + TSS region transcription start site region 160584
Tssr160585 X 13072054 to 13072069 15 + TSS region transcription start site region 160585
Tssr163013 X 13072548 to 13072567 19 - TSS region transcription start site region 163013
Tssr160586 X 13072806 to 13072826 20 + TSS region transcription start site region 160586