Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:12671872-13203128

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1810030O07Rik X 12654879 to 12673668 18789 - protein coding gene RIKEN cDNA 1810030O07 gene
Cpgi22628 X 12673214 to 12673660 446 CpG island CpG island 22628
Tssr160568 X 12673275 to 12673290 15 + TSS region transcription start site region 160568
Tssr162998 X 12673540 to 12673583 43 - TSS region transcription start site region 162998
Med14 X 12675369 to 12762073 86704 - protein coding gene mediator complex subunit 14
Tssr162999 X 12677585 to 12677612 27 - TSS region transcription start site region 162999
Tssr163000 X 12732967 to 12732972 5 - TSS region transcription start site region 163000
Cpgi22629 X 12761364 to 12762648 1284 CpG island CpG island 22629
Tssr163001 X 12761783 to 12761842 59 - TSS region transcription start site region 163001
Tssr163002 X 12761954 to 12761969 15 - TSS region transcription start site region 163002
Tssr163003 X 12761996 to 12762040 44 - TSS region transcription start site region 163003
Tssr163004 X 12762069 to 12762080 11 - TSS region transcription start site region 163004
Tssr163005 X 12762090 to 12762113 23 - TSS region transcription start site region 163005
Tssr163006 X 12762120 to 12762125 5 - TSS region transcription start site region 163006
Tssr160569 X 12762245 to 12762293 48 + TSS region transcription start site region 160569
Gm14634 X 12762278 to 12821492 59214 + lncRNA gene predicted gene 14634
Tssr160570 X 12762466 to 12762470 4 + TSS region transcription start site region 160570
Tssr5594 X 12826328 to 12826330 2 + TSS region transcription start site region 5594
Tssr160571 X 12840414 to 12840433 19 + TSS region transcription start site region 160571
Gm25063 X 12870269 to 12870362 93 - miRNA gene predicted gene, 25063
Tssr160572 X 12888209 to 12888256 47 + TSS region transcription start site region 160572
Gm14524 X 12913910 to 12914592 682 - pseudogene predicted gene 14524
Cpgi22630 X 12936870 to 12937256 386 CpG island CpG island 22630
AA414768 X 12936872 to 12938128 1256 + pseudogene expressed sequence AA414768
Tssr160573 X 12936917 to 12936942 25 + TSS region transcription start site region 160573
Gm14534 X 12944610 to 12944966 356 - pseudogene predicted gene 14534
Tssr163007 X 12954717 to 12954722 5 - TSS region transcription start site region 163007
Gm41890 X 12967588 to 12994484 26896 - lncRNA gene predicted gene, 41890
4930500G05Rik X 12977854 to 12994980 17126 + lncRNA gene RIKEN cDNA 4930500G05 gene
Tssr160574 X 12977856 to 12977893 37 + TSS region transcription start site region 160574
Tssr163008 X 12994521 to 12994530 9 - TSS region transcription start site region 163008
Tssr163009 X 12994553 to 12994562 9 - TSS region transcription start site region 163009
Tssr163010 X 12994645 to 12994654 9 - TSS region transcription start site region 163010
Tssr163011 X 13014143 to 13014187 44 - TSS region transcription start site region 163011
Gm1549 X 13028060 to 13028276 216 unclassified gene predicted gene 1549
Cpgi22631 X 13041675 to 13042078 403 CpG island CpG island 22631
Tssr160575 X 13041799 to 13041836 37 + TSS region transcription start site region 160575
Tssr160576 X 13041838 to 13041852 14 + TSS region transcription start site region 160576
Tssr160577 X 13042005 to 13042051 46 + TSS region transcription start site region 160577
5730405O15Rik X 13042015 to 13045295 3280 + lncRNA gene RIKEN cDNA 5730405O15 gene
Cpgi22632 X 13070915 to 13073087 2172 CpG island CpG island 22632
Tssr160578 X 13071059 to 13071082 23 + TSS region transcription start site region 160578
Tssr160579 X 13071146 to 13071169 23 + TSS region transcription start site region 160579
Tssr160580 X 13071261 to 13071297 36 + TSS region transcription start site region 160580
Tssr160581 X 13071470 to 13071499 29 + TSS region transcription start site region 160581
Usp9x X 13071498 to 13173328 101830 + protein coding gene ubiquitin specific peptidase 9, X chromosome
Tssr160582 X 13071500 to 13071576 76 + TSS region transcription start site region 160582
Tssr160583 X 13071624 to 13071663 39 + TSS region transcription start site region 160583
Tssr163012 X 13071924 to 13071929 5 - TSS region transcription start site region 163012
Tssr160584 X 13071999 to 13072039 40 + TSS region transcription start site region 160584
Tssr160585 X 13072054 to 13072069 15 + TSS region transcription start site region 160585
Tssr163013 X 13072548 to 13072567 19 - TSS region transcription start site region 163013
Tssr160586 X 13072806 to 13072826 20 + TSS region transcription start site region 160586
Tssr160587 X 13159831 to 13159860 29 + TSS region transcription start site region 160587
Gm15027 X 13179443 to 13179580 137 + pseudogene predicted gene 15027
Gm14536 X 13189538 to 13189675 137 + pseudogene predicted gene 14536
Tssr160588 X 13202542 to 13202546 4 + TSS region transcription start site region 160588
Rpl3-ps1 X 13202571 to 13203780 1209 + pseudogene ribosomal protein L3, pseudogene 1
Tssr160589 X 13202601 to 13202619 18 + TSS region transcription start site region 160589