Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:12421838-13661852

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128 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
DXMit103 X 12429717 to 12429863 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 103
DXMit224 X 12440280 to 12440395 115 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 224
DXMit206 X 12443815 to 12443917 102 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 206
Rpl30-ps11 X 12456886 to 12457230 344 - pseudogene ribosomal protein L30, pseudogene 11
Tssr162996 X 12457292 to 12457302 10 - TSS region transcription start site region 162996
Gm17861 X 12576987 to 12578406 1419 + pseudogene predicted gene, 17861
Cpgi22626 X 12587446 to 12588089 643 CpG island CpG island 22626
Tssr160561 X 12587791 to 12587846 55 + TSS region transcription start site region 160561
Atp6ap2 X 12587801 to 12617049 29248 + protein coding gene ATPase, H+ transporting, lysosomal accessory protein 2
Tssr160562 X 12587864 to 12587877 13 + TSS region transcription start site region 160562
Tssr160563 X 12609487 to 12609513 26 + TSS region transcription start site region 160563
Tssr160564 X 12615676 to 12615857 181 + TSS region transcription start site region 160564
Tssr162997 X 12616737 to 12616747 10 - TSS region transcription start site region 162997
Gm9432 X 12619474 to 12620232 758 - pseudogene predicted gene 9432
Tssr160565 X 12652238 to 12652241 3 + TSS region transcription start site region 160565
Tssr160566 X 12652248 to 12652262 14 + TSS region transcription start site region 160566
Cpgi22627 X 12652267 to 12652581 314 CpG island CpG island 22627
Tssr160567 X 12652272 to 12652286 14 + TSS region transcription start site region 160567
Gm4984 X 12652303 to 12652662 359 + pseudogene predicted pseudogene 4984
1810030O07Rik X 12654879 to 12673668 18789 - protein coding gene RIKEN cDNA 1810030O07 gene
Gm16265 X 12670635 to 12670742 107 + pseudogene predicted gene 16265
Cpgi22628 X 12673214 to 12673660 446 CpG island CpG island 22628
Tssr160568 X 12673275 to 12673290 15 + TSS region transcription start site region 160568
Tssr162998 X 12673540 to 12673583 43 - TSS region transcription start site region 162998
Med14 X 12675369 to 12762073 86704 - protein coding gene mediator complex subunit 14
Tssr162999 X 12677585 to 12677612 27 - TSS region transcription start site region 162999
Tssr163000 X 12732967 to 12732972 5 - TSS region transcription start site region 163000
Cpgi22629 X 12761364 to 12762648 1284 CpG island CpG island 22629
Tssr163001 X 12761783 to 12761842 59 - TSS region transcription start site region 163001
Tssr163002 X 12761954 to 12761969 15 - TSS region transcription start site region 163002
Tssr163003 X 12761996 to 12762040 44 - TSS region transcription start site region 163003
Tssr163004 X 12762069 to 12762080 11 - TSS region transcription start site region 163004
Tssr163005 X 12762090 to 12762113 23 - TSS region transcription start site region 163005
Tssr163006 X 12762120 to 12762125 5 - TSS region transcription start site region 163006
Tssr160569 X 12762245 to 12762293 48 + TSS region transcription start site region 160569
Gm14634 X 12762278 to 12821492 59214 + lncRNA gene predicted gene 14634
Tssr160570 X 12762466 to 12762470 4 + TSS region transcription start site region 160570
Tssr5594 X 12826328 to 12826330 2 + TSS region transcription start site region 5594
Tssr160571 X 12840414 to 12840433 19 + TSS region transcription start site region 160571
Gm25063 X 12870269 to 12870362 93 - miRNA gene predicted gene, 25063
Tssr160572 X 12888209 to 12888256 47 + TSS region transcription start site region 160572
Gm14524 X 12913910 to 12914592 682 - pseudogene predicted gene 14524
Cpgi22630 X 12936870 to 12937256 386 CpG island CpG island 22630
AA414768 X 12936872 to 12938128 1256 + pseudogene expressed sequence AA414768
Tssr160573 X 12936917 to 12936942 25 + TSS region transcription start site region 160573
Gm14534 X 12944610 to 12944966 356 - pseudogene predicted gene 14534
Tssr163007 X 12954717 to 12954722 5 - TSS region transcription start site region 163007
Gm41890 X 12967588 to 12994484 26896 - lncRNA gene predicted gene, 41890
4930500G05Rik X 12977854 to 12994980 17126 + lncRNA gene RIKEN cDNA 4930500G05 gene
Tssr160574 X 12977856 to 12977893 37 + TSS region transcription start site region 160574
Tssr163008 X 12994521 to 12994530 9 - TSS region transcription start site region 163008
Tssr163009 X 12994553 to 12994562 9 - TSS region transcription start site region 163009
Tssr163010 X 12994645 to 12994654 9 - TSS region transcription start site region 163010
Tssr163011 X 13014143 to 13014187 44 - TSS region transcription start site region 163011
Gm1549 X 13028060 to 13028276 216 unclassified gene predicted gene 1549
Cpgi22631 X 13041675 to 13042078 403 CpG island CpG island 22631
Tssr160575 X 13041799 to 13041836 37 + TSS region transcription start site region 160575
Tssr160576 X 13041838 to 13041852 14 + TSS region transcription start site region 160576
Tssr160577 X 13042005 to 13042051 46 + TSS region transcription start site region 160577
5730405O15Rik X 13042015 to 13045295 3280 + lncRNA gene RIKEN cDNA 5730405O15 gene
Cpgi22632 X 13070915 to 13073087 2172 CpG island CpG island 22632
Tssr160578 X 13071059 to 13071082 23 + TSS region transcription start site region 160578
Tssr160579 X 13071146 to 13071169 23 + TSS region transcription start site region 160579
Tssr160580 X 13071261 to 13071297 36 + TSS region transcription start site region 160580
Tssr160581 X 13071470 to 13071499 29 + TSS region transcription start site region 160581
Usp9x X 13071498 to 13173328 101830 + protein coding gene ubiquitin specific peptidase 9, X chromosome
Tssr160582 X 13071500 to 13071576 76 + TSS region transcription start site region 160582
Tssr160583 X 13071624 to 13071663 39 + TSS region transcription start site region 160583
Tssr163012 X 13071924 to 13071929 5 - TSS region transcription start site region 163012
Tssr160584 X 13071999 to 13072039 40 + TSS region transcription start site region 160584
Tssr160585 X 13072054 to 13072069 15 + TSS region transcription start site region 160585
Tssr163013 X 13072548 to 13072567 19 - TSS region transcription start site region 163013
Tssr160586 X 13072806 to 13072826 20 + TSS region transcription start site region 160586
Tssr160587 X 13159831 to 13159860 29 + TSS region transcription start site region 160587
Gm15027 X 13179443 to 13179580 137 + pseudogene predicted gene 15027
Gm14536 X 13189538 to 13189675 137 + pseudogene predicted gene 14536
Tssr160588 X 13202542 to 13202546 4 + TSS region transcription start site region 160588
Rpl3-ps1 X 13202571 to 13203780 1209 + pseudogene ribosomal protein L3, pseudogene 1
Tssr160589 X 13202601 to 13202619 18 + TSS region transcription start site region 160589
DXMit187 X 13212401 to 13212524 123 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 187
n-R5s3 X 13215698 to 13215809 111 - rRNA gene nuclear encoded rRNA 5S 3
Llph-ps2 X 13218210 to 13218602 392 - pseudogene LLP homolog, pseudogene 2
Tssr163014 X 13218620 to 13218656 36 - TSS region transcription start site region 163014
DXErtd11e X 13220718 to 13220940 222 DNA segment DNA segment, Chr X, ERATO Doi 11, expressed
2010308F09Rik X 13234641 to 13247733 13092 - lincRNA gene RIKEN cDNA 2010308F09 gene
Gm16481 X 13238327 to 13239550 1223 + pseudogene predicted gene 16481
Tssr160590 X 13256683 to 13256712 29 + TSS region transcription start site region 160590
Cpgi22633 X 13280799 to 13282249 1450 CpG island CpG island 22633
Ddx3x X 13280970 to 13294052 13082 + protein coding gene DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
Tssr160591 X 13281013 to 13281031 18 + TSS region transcription start site region 160591
Tssr160592 X 13284170 to 13284192 22 + TSS region transcription start site region 160592
Tssr160593 X 13284918 to 13284922 4 + TSS region transcription start site region 160593
Tssr160594 X 13287238 to 13287253 15 + TSS region transcription start site region 160594
Tssr160595 X 13289430 to 13289447 17 + TSS region transcription start site region 160595
Tssr160596 X 13291477 to 13291493 16 + TSS region transcription start site region 160596
Tssr160597 X 13297589 to 13297600 11 + TSS region transcription start site region 160597
Tssr160598 X 13302254 to 13302267 13 + TSS region transcription start site region 160598
Gm5380 X 13302285 to 13304417 2132 + pseudogene predicted gene 5380
Gm7129 X 13326023 to 13327019 996 - pseudogene predicted gene 7129
Gm34661 X 13343546 to 13348150 4604 - lncRNA gene predicted gene, 34661
Tssr163015 X 13345306 to 13345322 16 - TSS region transcription start site region 163015
Tssr5595 X 13358265 to 13358274 9 + TSS region transcription start site region 5595
Gm9434 X 13377866 to 13378678 812 - pseudogene predicted gene 9434
Gm4728 X 13392032 to 13392827 795 + pseudogene predicted gene 4728
DXMit85 X 13398815 to 13398952 137 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 85
Gm18106 X 13400384 to 13403623 3239 - pseudogene predicted gene, 18106
Tssr160599 X 13422358 to 13422366 8 + TSS region transcription start site region 160599
DXMit52 X 13459838 to 13459965 127 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 52
Cpgi22634 X 13461618 to 13462104 486 CpG island CpG island 22634
Nyx X 13466110 to 13489313 23203 + protein coding gene nyctalopin
Cpgi22635 X 13485900 to 13487042 1142 CpG island CpG island 22635
Gm14506 X 13490498 to 13491033 535 - pseudogene predicted gene 14506
UL107 X 13506220 to 13506440 220 DNA segment DNA segment, UL107
Cask X 13517080 to 13846784 329704 - protein coding gene calcium/calmodulin-dependent serine protein kinase (MAGUK family)
Tssr163016 X 13518935 to 13518936 1 - TSS region transcription start site region 163016
Tssr163017 X 13524181 to 13524182 1 - TSS region transcription start site region 163017
Gm34836 X 13569631 to 13586837 17206 + lncRNA gene predicted gene, 34836
Tssr160600 X 13622914 to 13622932 18 + TSS region transcription start site region 160600
Tssr160601 X 13623385 to 13623395 10 + TSS region transcription start site region 160601
Tssr160602 X 13623557 to 13623566 9 + TSS region transcription start site region 160602
Tssr160603 X 13623572 to 13623575 3 + TSS region transcription start site region 160603
Tssr160604 X 13632082 to 13632136 54 + TSS region transcription start site region 160604
Gpr34 X 13632089 to 13640858 8769 + protein coding gene G protein-coupled receptor 34
Tssr160605 X 13632780 to 13632798 18 + TSS region transcription start site region 160605
Gm25246 X 13653381 to 13653449 68 + miRNA gene predicted gene, 25246
Tssr160606 X 13661331 to 13661343 12 + TSS region transcription start site region 160606
Tssr160607 X 13661354 to 13661366 12 + TSS region transcription start site region 160607
Gpr82 X 13661363 to 13667433 6070 + protein coding gene G protein-coupled receptor 82