Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:11197558-12527749

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm14481 X 11220607 to 11221235 628 + pseudogene predicted gene 14481
DXMit27 X 11247634 to 11247773 139 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 27
H2al1a X 11299257 to 11299757 500 + protein coding gene H2A histone family member L1A
H2al1b X 11302432 to 11302921 489 + protein coding gene H2A histone family member L1B
H2al1c X 11305655 to 11305972 317 + protein coding gene H2A histone family member L1C
H2al1d X 11308824 to 11309141 317 + protein coding gene H2A histone family member L1D
H2al1e X 11311934 to 11312427 493 + protein coding gene H2A histone family member L1E
H2al1f X 11315158 to 11315475 317 + protein coding gene H2A histone family member L1F
H2al1g X 11318256 to 11318764 508 + protein coding gene H2A histone family member L1G
H2al1h X 11321492 to 11321809 317 + protein coding gene H2A histone family member L1H
H2al1i X 11324659 to 11324976 317 + protein coding gene H2A histone family member L1I
H2al1j X 11327822 to 11328151 329 + protein coding gene H2A histone family member L1J
Gm39495 X 11362034 to 11363510 1476 + lncRNA gene predicted gene, 39495
Gm34077 X 11395860 to 11418640 22780 - lncRNA gene predicted gene, 34077
Gm34138 X 11434263 to 11437179 2916 - lncRNA gene predicted gene, 34138
Gm39496 X 11487873 to 11525733 37860 - lncRNA gene predicted gene, 39496
8430439B09Rik X 11493925 to 11494290 365 unclassified gene RIKEN cDNA 8430439B09 gene
DXMit162 X 11513703 to 11513827 124 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 162
Gm34187 X 11528393 to 11533441 5048 - lncRNA gene predicted gene, 34187
Gm14515 X 11601354 to 11601569 215 + pseudogene predicted gene 14515
Cpgi22606 X 11664327 to 11665329 1002 CpG island CpG island 22606
Gm14513 X 11684002 to 11684124 122 - pseudogene predicted gene 14513
DXMit199 X 11695547 to 11695652 105 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-199
Cpgi22607 X 11806926 to 11807996 1070 CpG island CpG island 22607
Gm26314 X 11850484 to 11850590 106 + snRNA gene predicted gene, 26314
DXMit54 X 11862558 to 11862749 191 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 54
Rpl23a-ps13 X 11867390 to 11867759 369 + pseudogene ribosomal protein L23A, pseudogene 13
Gm14491 X 11913091 to 11913289 198 - pseudogene predicted gene 14491
Gm14512 X 11984468 to 11984697 229 + pseudogene predicted gene 14512
Cpgi22608 X 11998877 to 11999478 601 CpG island CpG island 22608
Wght11 X 12000000 to 60000000 48000000 QTL weight 11
Lgth13 X 12000000 to 60000000 48000000 QTL body length 13
Gm34301 X 12001761 to 12004263 2502 + lncRNA gene predicted gene, 34301
Cpgi22609 X 12005747 to 12007632 1885 CpG island CpG island 22609
Tssr160554 X 12005758 to 12005788 30 + TSS region transcription start site region 160554
Tssr160555 X 12005821 to 12005823 2 + TSS region transcription start site region 160555
Bcor X 12036740 to 12160355 123615 - protein coding gene BCL6 interacting corepressor
Tssr162983 X 12053625 to 12053629 4 - TSS region transcription start site region 162983
Tssr162984 X 12058623 to 12058636 13 - TSS region transcription start site region 162984
Tssr162985 X 12058752 to 12058766 14 - TSS region transcription start site region 162985
Tssr5592 X 12060510 to 12060511 1 + TSS region transcription start site region 5592
Cpgi22610 X 12076753 to 12077822 1069 CpG island CpG island 22610
Cpgi22611 X 12078446 to 12081660 3214 CpG island CpG island 22611
Tssr160556 X 12079208 to 12079223 15 + TSS region transcription start site region 160556
Tssr160557 X 12079260 to 12079270 10 + TSS region transcription start site region 160557
Tssr162986 X 12079269 to 12079276 7 - TSS region transcription start site region 162986
Tssr162987 X 12080052 to 12080078 26 - TSS region transcription start site region 162987
Tssr162988 X 12080545 to 12080561 16 - TSS region transcription start site region 162988
Tssr162989 X 12080575 to 12080582 7 - TSS region transcription start site region 162989
Gm46687 X 12080671 to 12120206 39535 + lncRNA gene predicted gene, 46687
Cpgi22612 X 12086919 to 12089186 2267 CpG island CpG island 22612
Tssr160558 X 12089032 to 12089055 23 + TSS region transcription start site region 160558
Cpgi22613 X 12089672 to 12090076 404 CpG island CpG island 22613
Cpgi22614 X 12091012 to 12092079 1067 CpG island CpG island 22614
Cpgi22615 X 12127607 to 12129118 1511 CpG island CpG island 22615
Tssr162990 X 12128356 to 12128367 11 - TSS region transcription start site region 162990
Tssr162991 X 12128386 to 12128412 26 - TSS region transcription start site region 162991
Cpgi22616 X 12129277 to 12129525 248 CpG island CpG island 22616
Cpgi22617 X 12133390 to 12133874 484 CpG island CpG island 22617
Cpgi22618 X 12134526 to 12136015 1489 CpG island CpG island 22618
Tssr160559 X 12136100 to 12136126 26 + TSS region transcription start site region 160559
Cpgi22619 X 12136372 to 12137693 1321 CpG island CpG island 22619
Tssr162992 X 12137137 to 12137161 24 - TSS region transcription start site region 162992
Cpgi22620 X 12139933 to 12140641 708 CpG island CpG island 22620
Cpgi22621 X 12151813 to 12152014 201 CpG island CpG island 22621
Cpgi22622 X 12155885 to 12156158 273 CpG island CpG island 22622
Tssr5593 X 12156496 to 12156537 41 + TSS region transcription start site region 5593
Tssr160560 X 12157708 to 12157712 4 + TSS region transcription start site region 160560
Cpgi22623 X 12158431 to 12159135 704 CpG island CpG island 22623
Cpgi22624 X 12159645 to 12160596 951 CpG island CpG island 22624
Tssr162993 X 12160455 to 12160479 24 - TSS region transcription start site region 162993
Tssr162994 X 12160492 to 12160523 31 - TSS region transcription start site region 162994
Gm14521 X 12179718 to 12180067 349 - pseudogene predicted gene 14521
Cpgi22625 X 12252463 to 12252719 256 CpG island CpG island 22625
DXMit205.2 X 12326540 to 12326660 120 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 205.2
DXMit205 X 12326643 to 12326804 161 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 205
Gm14635 X 12339782 to 12354996 15214 - lincRNA gene predicted gene 14635
Tssr162995 X 12354979 to 12355006 27 - TSS region transcription start site region 162995
DXMit103 X 12429717 to 12429863 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 103
DXMit224 X 12440280 to 12440395 115 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 224
DXMit206 X 12443815 to 12443917 102 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 206
Rpl30-ps11 X 12456886 to 12457230 344 - pseudogene ribosomal protein L30, pseudogene 11
Tssr162996 X 12457292 to 12457302 10 - TSS region transcription start site region 162996