Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:110697720-113328452

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm44593 X 110634586 to 110812324 177738 - lincRNA gene predicted gene 44593
Gm4354 X 110734150 to 110736752 2602 unclassified gene predicted gene 4354
Tssr161878 X 110811367 to 110811383 16 + TSS region transcription start site region 161878
Tssr164065 X 110812814 to 110812823 9 - TSS region transcription start site region 164065
Tssr161879 X 110814263 to 110814276 13 + TSS region transcription start site region 161879
Pou3f4 X 110814280 to 110817207 2927 + protein coding gene POU domain, class 3, transcription factor 4
Cpgi22915 X 110814339 to 110814998 659 CpG island CpG island 22915
Tssr161880 X 110814395 to 110814413 18 + TSS region transcription start site region 161880
Tssr161881 X 110814422 to 110814449 27 + TSS region transcription start site region 161881
Tssr161882 X 110814459 to 110814476 17 + TSS region transcription start site region 161882
Cpgi22916 X 110815256 to 110815776 520 CpG island CpG island 22916
Tssr161883 X 110815682 to 110815692 10 + TSS region transcription start site region 161883
Tssr161884 X 110837050 to 110837057 7 + TSS region transcription start site region 161884
Tssr161885 X 111110411 to 111110424 13 + TSS region transcription start site region 161885
Cylc1 X 111110418 to 111125854 15436 + protein coding gene cylicin, basic protein of sperm head cytoskeleton 1
Tssr5672 X 111167742 to 111167744 2 + TSS region transcription start site region 5672
Gm10112 X 111168340 to 111168693 353 + pseudogene predicted pseudogene 10112
n-TRcct4 X 111377217 to 111377289 72 + tRNA gene nuclear encoded tRNA arginine 4 (anticodon CCT)
Rps6ka6 X 111388192 to 111537959 149767 - protein coding gene ribosomal protein S6 kinase polypeptide 6
Tssr164066 X 111450662 to 111450673 11 - TSS region transcription start site region 164066
Cpgi22917 X 111462584 to 111463636 1052 CpG island CpG island 22917
Tssr164067 X 111463036 to 111463048 12 - TSS region transcription start site region 164067
Tssr164068 X 111463063 to 111463081 18 - TSS region transcription start site region 164068
Tssr164069 X 111463103 to 111463139 36 - TSS region transcription start site region 164069
Tssr164070 X 111463149 to 111463173 24 - TSS region transcription start site region 164070
Tssr164071 X 111463454 to 111463473 19 - TSS region transcription start site region 164071
Tssr164072 X 111463478 to 111463520 42 - TSS region transcription start site region 164072
Tssr164073 X 111531163 to 111531176 13 - TSS region transcription start site region 164073
Tssr164074 X 111536301 to 111536317 16 - TSS region transcription start site region 164074
Tssr164075 X 111536325 to 111536341 16 - TSS region transcription start site region 164075
Tssr164076 X 111536385 to 111536388 3 - TSS region transcription start site region 164076
Tssr164077 X 111537957 to 111537964 7 - TSS region transcription start site region 164077
Gm7340 X 111571699 to 111574450 2751 + pseudogene predicted gene 7340
Hdx X 111575204 to 111697079 121875 - protein coding gene highly divergent homeobox
Tssr164078 X 111697069 to 111697127 58 - TSS region transcription start site region 164078
Tssr5673 X 111768406 to 111768415 9 - TSS region transcription start site region 5673
Gm14898 X 111830621 to 111831265 644 + pseudogene predicted gene 14898
Gm14899 X 111860628 to 111861175 547 + pseudogene predicted gene 14899
Gm45194 X 111891389 to 112240590 349201 + protein coding gene predicted gene 45194
Cpgi22918 X 111894397 to 111895605 1208 CpG island CpG island 22918
Tssr161886 X 111894951 to 111894962 11 + TSS region transcription start site region 161886
Tssr161887 X 111944396 to 111944410 14 + TSS region transcription start site region 161887
Tex16 X 112011007 to 112127326 116319 + protein coding gene testis expressed gene 16
Gm14900 X 112012720 to 112013452 732 + pseudogene predicted gene 14900
Gm6335 X 112162554 to 112163747 1193 + pseudogene predicted gene 6335
4933403O08Rik X 112239049 to 112243852 4803 + protein coding gene RIKEN cDNA 4933403O08 gene
Gm5393 X 112302196 to 112302467 271 + pseudogene predicted pseudogene 5393
Tssr161888 X 112311351 to 112311363 12 + TSS region transcription start site region 161888
Apool X 112311352 to 112372755 61403 + protein coding gene apolipoprotein O-like
Tssr161889 X 112311375 to 112311407 32 + TSS region transcription start site region 161889
Tssr164079 X 112314408 to 112314420 12 - TSS region transcription start site region 164079
Satl1 X 112384305 to 112406779 22474 - protein coding gene spermidine/spermine N1-acetyl transferase-like 1
Tssr164080 X 112384535 to 112384543 8 - TSS region transcription start site region 164080
Tssr164081 X 112407053 to 112407072 19 - TSS region transcription start site region 164081
Gm6418 X 112459033 to 112462574 3541 - pseudogene predicted gene 6418
Gm14908 X 112465421 to 112466628 1207 + pseudogene predicted gene 14908
Tssr161890 X 112495266 to 112495281 15 + TSS region transcription start site region 161890
2010106E10Rik X 112495274 to 112558343 63069 + protein coding gene RIKEN cDNA 2010106E10 gene
Tssr161891 X 112497064 to 112497068 4 + TSS region transcription start site region 161891
Tssr161892 X 112512418 to 112512441 23 + TSS region transcription start site region 161892
Tssr5674 X 112521782 to 112521784 2 + TSS region transcription start site region 5674
Tssr161893 X 112558124 to 112558133 9 + TSS region transcription start site region 161893
Cpgi22920 X 112600426 to 112601996 1570 CpG island CpG island 22920
Zfp711 X 112600526 to 112635070 34544 + protein coding gene zinc finger protein 711
Tssr161894 X 112600722 to 112600738 16 + TSS region transcription start site region 161894
Tssr161895 X 112600824 to 112600835 11 + TSS region transcription start site region 161895
Pof1b X 112638431 to 112698651 60220 - protein coding gene premature ovarian failure 1B
Gm14921 X 112660521 to 112661428 907 - pseudogene predicted gene 14921
Tssr164082 X 112698350 to 112698373 23 - TSS region transcription start site region 164082
Tssr164083 X 112698375 to 112698386 11 - TSS region transcription start site region 164083
Tssr164084 X 112698387 to 112698399 12 - TSS region transcription start site region 164084
Tssr164085 X 112698414 to 112698485 71 - TSS region transcription start site region 164085
Tssr164086 X 112698642 to 112698657 15 - TSS region transcription start site region 164086
Tssr164087 X 112698664 to 112698689 25 - TSS region transcription start site region 164087
Gm14922 X 112773953 to 112774115 162 - pseudogene predicted gene 14922
Gm14923 X 112774104 to 112775727 1623 + pseudogene predicted gene 14923
Gm6427 X 112791142 to 112792120 978 + pseudogene predicted gene 6427
Gm6429 X 112822222 to 112822696 474 - pseudogene predicted gene 6429
Gm14937 X 112958619 to 112958826 207 + pseudogene predicted gene 14937
Gm14938 X 112967089 to 112968031 942 + pseudogene predicted gene 14938
Gm14936 X 112980864 to 113009754 28890 - lincRNA gene predicted gene 14936
Gm14939 X 113034193 to 113035654 1461 - pseudogene predicted gene 14939
Chm X 113040593 to 113185517 144924 - protein coding gene choroidermia (RAB escort protein 1)
Mir361 X 113074824 to 113074893 69 - miRNA gene microRNA 361
Tssr164088 X 113099457 to 113099476 19 - TSS region transcription start site region 164088
Tssr164089 X 113171974 to 113171983 9 - TSS region transcription start site region 164089
Tssr164090 X 113185485 to 113185522 37 - TSS region transcription start site region 164090
Gm7405 X 113226287 to 113227320 1033 - pseudogene predicted gene 7405
Dach2 X 113297510 to 113836386 538876 + protein coding gene dachshund family transcription factor 2
Tssr161896 X 113298231 to 113298251 20 + TSS region transcription start site region 161896
Tssr161897 X 113298283 to 113298294 11 + TSS region transcription start site region 161897
Cpgi22921 X 113298648 to 113298813 165 CpG island CpG island 22921