Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:108701057-109681068

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Brwd3 X 108737227 to 108834362 97135 - protein coding gene bromodomain and WD repeat domain containing 3
Tssr164047 X 108748230 to 108748239 9 - TSS region transcription start site region 164047
Tssr164048 X 108765345 to 108765388 43 - TSS region transcription start site region 164048
Tssr164049 X 108765420 to 108765423 3 - TSS region transcription start site region 164049
Tssr164050 X 108834272 to 108834283 11 - TSS region transcription start site region 164050
Tssr164051 X 108834303 to 108834381 78 - TSS region transcription start site region 164051
2810403D21Rik X 108834478 to 108886896 52418 + lncRNA gene RIKEN cDNA 2810403D21 gene
Tssr161840 X 108834650 to 108834712 62 + TSS region transcription start site region 161840
Tssr161841 X 108893149 to 108893196 47 + TSS region transcription start site region 161841
Gm14870 X 108893496 to 108893651 155 + pseudogene predicted gene 14870
5730416F02Rik X 109001485 to 109002296 811 + pseudogene RIKEN cDNA 5730416F02 gene
Hmgn5 X 109004537 to 109013380 8843 - protein coding gene high-mobility group nucleosome binding domain 5
Tssr164052 X 109005712 to 109005723 11 - TSS region transcription start site region 164052
Gm23322 X 109009681 to 109009847 166 - snRNA gene predicted gene, 23322
Tssr164053 X 109009843 to 109009848 5 - TSS region transcription start site region 164053
Tssr164054 X 109013344 to 109013371 27 - TSS region transcription start site region 164054
Tssr164055 X 109013372 to 109013388 16 - TSS region transcription start site region 164055
Cpgi22914 X 109013377 to 109013726 349 CpG island CpG island 22914
Tssr164056 X 109013389 to 109013398 9 - TSS region transcription start site region 164056
Tssr164057 X 109013460 to 109013471 11 - TSS region transcription start site region 164057
Tssr164058 X 109013473 to 109013484 11 - TSS region transcription start site region 164058
Tssr164059 X 109013490 to 109013501 11 - TSS region transcription start site region 164059
Gm25797 X 109023356 to 109023462 106 - snRNA gene predicted gene, 25797
Tssr161842 X 109095359 to 109095391 32 + TSS region transcription start site region 161842
Tssr161843 X 109095399 to 109095412 13 + TSS region transcription start site region 161843
Sh3bgrl X 109095407 to 109162467 67060 + protein coding gene SH3-binding domain glutamic acid-rich protein like
Tssr161844 X 109095415 to 109095426 11 + TSS region transcription start site region 161844
Tssr161845 X 109095447 to 109095476 29 + TSS region transcription start site region 161845
Tssr161846 X 109095481 to 109095522 41 + TSS region transcription start site region 161846
Tssr161847 X 109095539 to 109095554 15 + TSS region transcription start site region 161847
Tssr161848 X 109107018 to 109107021 3 + TSS region transcription start site region 161848
Gm26415 X 109115225 to 109115516 291 - unclassified non-coding RNA gene predicted gene, 26415
Tssr161849 X 109118320 to 109118370 50 + TSS region transcription start site region 161849
Gm14869 X 109120801 to 109121684 883 - pseudogene predicted gene 14869
Tssr161850 X 109150014 to 109150074 60 + TSS region transcription start site region 161850
Tssr161851 X 109150146 to 109150150 4 + TSS region transcription start site region 161851
Tssr161852 X 109154299 to 109154315 16 + TSS region transcription start site region 161852
Tssr161853 X 109154339 to 109154363 24 + TSS region transcription start site region 161853
Tssr161854 X 109160120 to 109160180 60 + TSS region transcription start site region 161854
Tssr161855 X 109160267 to 109160283 16 + TSS region transcription start site region 161855
Tssr161856 X 109160366 to 109160405 39 + TSS region transcription start site region 161856
Tssr161857 X 109160453 to 109160475 22 + TSS region transcription start site region 161857
Tssr161858 X 109160557 to 109160614 57 + TSS region transcription start site region 161858
Tssr164060 X 109160736 to 109160763 27 - TSS region transcription start site region 164060
Tssr161859 X 109160793 to 109160901 108 + TSS region transcription start site region 161859
Tssr164061 X 109160918 to 109160943 25 - TSS region transcription start site region 164061
Tssr161860 X 109160922 to 109160967 45 + TSS region transcription start site region 161860
Tssr161861 X 109161034 to 109161089 55 + TSS region transcription start site region 161861
Tssr161862 X 109161093 to 109161161 68 + TSS region transcription start site region 161862
Tssr161863 X 109161228 to 109161301 73 + TSS region transcription start site region 161863
Tssr161864 X 109161304 to 109161315 11 + TSS region transcription start site region 161864
Tssr161865 X 109161379 to 109161408 29 + TSS region transcription start site region 161865
Tssr161866 X 109161409 to 109161426 17 + TSS region transcription start site region 161866
Tssr161867 X 109161630 to 109161657 27 + TSS region transcription start site region 161867
Tssr161868 X 109161680 to 109161700 20 + TSS region transcription start site region 161868
Tssr161869 X 109161734 to 109161745 11 + TSS region transcription start site region 161869
Tssr161870 X 109161856 to 109161868 12 + TSS region transcription start site region 161870
Gm34464 X 109183646 to 109191799 8153 - lncRNA gene predicted gene, 34464
Tssr164062 X 109191057 to 109191068 11 - TSS region transcription start site region 164062
Tssr161871 X 109196750 to 109196763 13 + TSS region transcription start site region 161871
Gm6377 X 109196756 to 109200439 3683 + protein coding gene predicted gene 6377
Tssr161872 X 109196772 to 109196794 22 + TSS region transcription start site region 161872
Tssr161873 X 109196802 to 109196818 16 + TSS region transcription start site region 161873
Tssr161874 X 109196822 to 109196829 7 + TSS region transcription start site region 161874
Tssr161875 X 109199568 to 109199577 9 + TSS region transcription start site region 161875
Tssr161876 X 109199640 to 109199651 11 + TSS region transcription start site region 161876
Gm14868 X 109280185 to 109280400 215 - pseudogene predicted gene 14868
Gm4784 X 109388744 to 109390520 1776 - pseudogene predicted gene 4784
Tssr164063 X 109392166 to 109392194 28 - TSS region transcription start site region 164063
Tssr161877 X 109445395 to 109445453 58 + TSS region transcription start site region 161877
Gm34521 X 109445438 to 109558772 113334 + protein coding gene predicted gene, 34521
9430014K20Rik X 109509236 to 109510177 941 unclassified gene RIKEN cDNA 9430014K20 gene
Tssr164064 X 109623198 to 109623201 3 - TSS region transcription start site region 164064