Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:108462227-109109362

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr161837 X 108484392 to 108484420 28 + TSS region transcription start site region 161837
Tssr161838 X 108484421 to 108484432 11 + TSS region transcription start site region 161838
Tssr161839 X 108484435 to 108484440 5 + TSS region transcription start site region 161839
Gm17888 X 108484618 to 108485427 809 + pseudogene predicted gene, 17888
Gm379 X 108664076 to 108664891 815 - pseudogene predicted gene 379
Tssr164046 X 108664926 to 108664951 25 - TSS region transcription start site region 164046
DXMit65 X 108673056 to 108673203 147 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 65
Brwd3 X 108737227 to 108834362 97135 - protein coding gene bromodomain and WD repeat domain containing 3
Tssr164047 X 108748230 to 108748239 9 - TSS region transcription start site region 164047
Tssr164048 X 108765345 to 108765388 43 - TSS region transcription start site region 164048
Tssr164049 X 108765420 to 108765423 3 - TSS region transcription start site region 164049
Tssr164050 X 108834272 to 108834283 11 - TSS region transcription start site region 164050
Tssr164051 X 108834303 to 108834381 78 - TSS region transcription start site region 164051
2810403D21Rik X 108834478 to 108886896 52418 + lncRNA gene RIKEN cDNA 2810403D21 gene
Tssr161840 X 108834650 to 108834712 62 + TSS region transcription start site region 161840
Tssr161841 X 108893149 to 108893196 47 + TSS region transcription start site region 161841
Gm14870 X 108893496 to 108893651 155 + pseudogene predicted gene 14870
5730416F02Rik X 109001485 to 109002296 811 + pseudogene RIKEN cDNA 5730416F02 gene
Hmgn5 X 109004537 to 109013380 8843 - protein coding gene high-mobility group nucleosome binding domain 5
Tssr164052 X 109005712 to 109005723 11 - TSS region transcription start site region 164052
Gm23322 X 109009681 to 109009847 166 - snRNA gene predicted gene, 23322
Tssr164053 X 109009843 to 109009848 5 - TSS region transcription start site region 164053
Tssr164054 X 109013344 to 109013371 27 - TSS region transcription start site region 164054
Tssr164055 X 109013372 to 109013388 16 - TSS region transcription start site region 164055
Cpgi22914 X 109013377 to 109013726 349 CpG island CpG island 22914
Tssr164056 X 109013389 to 109013398 9 - TSS region transcription start site region 164056
Tssr164057 X 109013460 to 109013471 11 - TSS region transcription start site region 164057
Tssr164058 X 109013473 to 109013484 11 - TSS region transcription start site region 164058
Tssr164059 X 109013490 to 109013501 11 - TSS region transcription start site region 164059
Gm25797 X 109023356 to 109023462 106 - snRNA gene predicted gene, 25797
Tssr161842 X 109095359 to 109095391 32 + TSS region transcription start site region 161842
Tssr161843 X 109095399 to 109095412 13 + TSS region transcription start site region 161843
Sh3bgrl X 109095407 to 109162467 67060 + protein coding gene SH3-binding domain glutamic acid-rich protein like
Tssr161844 X 109095415 to 109095426 11 + TSS region transcription start site region 161844
Tssr161845 X 109095447 to 109095476 29 + TSS region transcription start site region 161845
Tssr161846 X 109095481 to 109095522 41 + TSS region transcription start site region 161846
Tssr161847 X 109095539 to 109095554 15 + TSS region transcription start site region 161847
Tssr161848 X 109107018 to 109107021 3 + TSS region transcription start site region 161848