Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:108381367-113241383

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm378 X 108405794 to 108406547 753 + pseudogene predicted pseudogene 378
Gm9218 X 108446389 to 108449268 2879 + pseudogene predicted gene 9218
Tssr161837 X 108484392 to 108484420 28 + TSS region transcription start site region 161837
Tssr161838 X 108484421 to 108484432 11 + TSS region transcription start site region 161838
Tssr161839 X 108484435 to 108484440 5 + TSS region transcription start site region 161839
Gm17888 X 108484618 to 108485427 809 + pseudogene predicted gene, 17888
Gm379 X 108664076 to 108664891 815 - pseudogene predicted gene 379
Tssr164046 X 108664926 to 108664951 25 - TSS region transcription start site region 164046
DXMit65 X 108673056 to 108673203 147 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 65
Brwd3 X 108737227 to 108834362 97135 - protein coding gene bromodomain and WD repeat domain containing 3
Tssr164047 X 108748230 to 108748239 9 - TSS region transcription start site region 164047
Tssr164048 X 108765345 to 108765388 43 - TSS region transcription start site region 164048
Tssr164049 X 108765420 to 108765423 3 - TSS region transcription start site region 164049
Tssr164050 X 108834272 to 108834283 11 - TSS region transcription start site region 164050
Tssr164051 X 108834303 to 108834381 78 - TSS region transcription start site region 164051
2810403D21Rik X 108834478 to 108886896 52418 + lncRNA gene RIKEN cDNA 2810403D21 gene
Tssr161840 X 108834650 to 108834712 62 + TSS region transcription start site region 161840
Tssr161841 X 108893149 to 108893196 47 + TSS region transcription start site region 161841
Gm14870 X 108893496 to 108893651 155 + pseudogene predicted gene 14870
5730416F02Rik X 109001485 to 109002296 811 + pseudogene RIKEN cDNA 5730416F02 gene
Hmgn5 X 109004537 to 109013380 8843 - protein coding gene high-mobility group nucleosome binding domain 5
Tssr164052 X 109005712 to 109005723 11 - TSS region transcription start site region 164052
Gm23322 X 109009681 to 109009847 166 - snRNA gene predicted gene, 23322
Tssr164053 X 109009843 to 109009848 5 - TSS region transcription start site region 164053
Tssr164054 X 109013344 to 109013371 27 - TSS region transcription start site region 164054
Tssr164055 X 109013372 to 109013388 16 - TSS region transcription start site region 164055
Cpgi22914 X 109013377 to 109013726 349 CpG island CpG island 22914
Tssr164056 X 109013389 to 109013398 9 - TSS region transcription start site region 164056
Tssr164057 X 109013460 to 109013471 11 - TSS region transcription start site region 164057
Tssr164058 X 109013473 to 109013484 11 - TSS region transcription start site region 164058
Tssr164059 X 109013490 to 109013501 11 - TSS region transcription start site region 164059
Gm25797 X 109023356 to 109023462 106 - snRNA gene predicted gene, 25797
Tssr161842 X 109095359 to 109095391 32 + TSS region transcription start site region 161842
Tssr161843 X 109095399 to 109095412 13 + TSS region transcription start site region 161843
Sh3bgrl X 109095407 to 109162467 67060 + protein coding gene SH3-binding domain glutamic acid-rich protein like
Tssr161844 X 109095415 to 109095426 11 + TSS region transcription start site region 161844
Tssr161845 X 109095447 to 109095476 29 + TSS region transcription start site region 161845
Tssr161846 X 109095481 to 109095522 41 + TSS region transcription start site region 161846
Tssr161847 X 109095539 to 109095554 15 + TSS region transcription start site region 161847
Tssr161848 X 109107018 to 109107021 3 + TSS region transcription start site region 161848
Gm26415 X 109115225 to 109115516 291 - unclassified non-coding RNA gene predicted gene, 26415
Tssr161849 X 109118320 to 109118370 50 + TSS region transcription start site region 161849
Gm14869 X 109120801 to 109121684 883 - pseudogene predicted gene 14869
Tssr161850 X 109150014 to 109150074 60 + TSS region transcription start site region 161850
Tssr161851 X 109150146 to 109150150 4 + TSS region transcription start site region 161851
Tssr161852 X 109154299 to 109154315 16 + TSS region transcription start site region 161852
Tssr161853 X 109154339 to 109154363 24 + TSS region transcription start site region 161853
Tssr161854 X 109160120 to 109160180 60 + TSS region transcription start site region 161854
Tssr161855 X 109160267 to 109160283 16 + TSS region transcription start site region 161855
Tssr161856 X 109160366 to 109160405 39 + TSS region transcription start site region 161856
Tssr161857 X 109160453 to 109160475 22 + TSS region transcription start site region 161857
Tssr161858 X 109160557 to 109160614 57 + TSS region transcription start site region 161858
Tssr164060 X 109160736 to 109160763 27 - TSS region transcription start site region 164060
Tssr161859 X 109160793 to 109160901 108 + TSS region transcription start site region 161859
Tssr164061 X 109160918 to 109160943 25 - TSS region transcription start site region 164061
Tssr161860 X 109160922 to 109160967 45 + TSS region transcription start site region 161860
Tssr161861 X 109161034 to 109161089 55 + TSS region transcription start site region 161861
Tssr161862 X 109161093 to 109161161 68 + TSS region transcription start site region 161862
Tssr161863 X 109161228 to 109161301 73 + TSS region transcription start site region 161863
Tssr161864 X 109161304 to 109161315 11 + TSS region transcription start site region 161864
Tssr161865 X 109161379 to 109161408 29 + TSS region transcription start site region 161865
Tssr161866 X 109161409 to 109161426 17 + TSS region transcription start site region 161866
Tssr161867 X 109161630 to 109161657 27 + TSS region transcription start site region 161867
Tssr161868 X 109161680 to 109161700 20 + TSS region transcription start site region 161868
Tssr161869 X 109161734 to 109161745 11 + TSS region transcription start site region 161869
Tssr161870 X 109161856 to 109161868 12 + TSS region transcription start site region 161870
Gm34464 X 109183646 to 109191799 8153 - lncRNA gene predicted gene, 34464
Tssr164062 X 109191057 to 109191068 11 - TSS region transcription start site region 164062
Tssr161871 X 109196750 to 109196763 13 + TSS region transcription start site region 161871
Gm6377 X 109196756 to 109200439 3683 + protein coding gene predicted gene 6377
Tssr161872 X 109196772 to 109196794 22 + TSS region transcription start site region 161872
Tssr161873 X 109196802 to 109196818 16 + TSS region transcription start site region 161873
Tssr161874 X 109196822 to 109196829 7 + TSS region transcription start site region 161874
Tssr161875 X 109199568 to 109199577 9 + TSS region transcription start site region 161875
Tssr161876 X 109199640 to 109199651 11 + TSS region transcription start site region 161876
Gm14868 X 109280185 to 109280400 215 - pseudogene predicted gene 14868
Gm4784 X 109388744 to 109390520 1776 - pseudogene predicted gene 4784
Tssr164063 X 109392166 to 109392194 28 - TSS region transcription start site region 164063
Tssr161877 X 109445395 to 109445453 58 + TSS region transcription start site region 161877
Gm34521 X 109445438 to 109558772 113334 + protein coding gene predicted gene, 34521
9430014K20Rik X 109509236 to 109510177 941 unclassified gene RIKEN cDNA 9430014K20 gene
Tssr164064 X 109623198 to 109623201 3 - TSS region transcription start site region 164064
Gm4991 X 109910221 to 109911772 1551 + pseudogene predicted gene 4991
Gm7134 X 110372753 to 110375156 2403 + pseudogene predicted gene 7134
Gm9225 X 110539954 to 110540544 590 + pseudogene predicted gene 9225
Gm14886 X 110604497 to 110607125 2628 + pseudogene predicted gene 14886
Gm26108 X 110622832 to 110623022 190 - snRNA gene predicted gene, 26108
Gm44593 X 110634586 to 110812324 177738 - lincRNA gene predicted gene 44593
DXMit214 X 110665512 to 110665624 112 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 214
Gm4354 X 110734150 to 110736752 2602 unclassified gene predicted gene 4354
Tssr161878 X 110811367 to 110811383 16 + TSS region transcription start site region 161878
Tssr164065 X 110812814 to 110812823 9 - TSS region transcription start site region 164065
Tssr161879 X 110814263 to 110814276 13 + TSS region transcription start site region 161879
Pou3f4 X 110814280 to 110817207 2927 + protein coding gene POU domain, class 3, transcription factor 4
Cpgi22915 X 110814339 to 110814998 659 CpG island CpG island 22915
Tssr161880 X 110814395 to 110814413 18 + TSS region transcription start site region 161880
Tssr161881 X 110814422 to 110814449 27 + TSS region transcription start site region 161881
Tssr161882 X 110814459 to 110814476 17 + TSS region transcription start site region 161882
Cpgi22916 X 110815256 to 110815776 520 CpG island CpG island 22916
Tssr161883 X 110815682 to 110815692 10 + TSS region transcription start site region 161883
Tssr161884 X 110837050 to 110837057 7 + TSS region transcription start site region 161884
Tssr161885 X 111110411 to 111110424 13 + TSS region transcription start site region 161885
Cylc1 X 111110418 to 111125854 15436 + protein coding gene cylicin, basic protein of sperm head cytoskeleton 1
Tssr5672 X 111167742 to 111167744 2 + TSS region transcription start site region 5672
Gm10112 X 111168340 to 111168693 353 + pseudogene predicted pseudogene 10112
n-TRcct4 X 111377217 to 111377289 72 + tRNA gene nuclear encoded tRNA arginine 4 (anticodon CCT)
Rps6ka6 X 111388192 to 111537959 149767 - protein coding gene ribosomal protein S6 kinase polypeptide 6
Tssr164066 X 111450662 to 111450673 11 - TSS region transcription start site region 164066
Cpgi22917 X 111462584 to 111463636 1052 CpG island CpG island 22917
Tssr164067 X 111463036 to 111463048 12 - TSS region transcription start site region 164067
Tssr164068 X 111463063 to 111463081 18 - TSS region transcription start site region 164068
Tssr164069 X 111463103 to 111463139 36 - TSS region transcription start site region 164069
Tssr164070 X 111463149 to 111463173 24 - TSS region transcription start site region 164070
Tssr164071 X 111463454 to 111463473 19 - TSS region transcription start site region 164071
Tssr164072 X 111463478 to 111463520 42 - TSS region transcription start site region 164072
Tssr164073 X 111531163 to 111531176 13 - TSS region transcription start site region 164073
Tssr164074 X 111536301 to 111536317 16 - TSS region transcription start site region 164074
Tssr164075 X 111536325 to 111536341 16 - TSS region transcription start site region 164075
Tssr164076 X 111536385 to 111536388 3 - TSS region transcription start site region 164076
Tssr164077 X 111537957 to 111537964 7 - TSS region transcription start site region 164077
Gm7340 X 111571699 to 111574450 2751 + pseudogene predicted gene 7340
Hdx X 111575204 to 111697079 121875 - protein coding gene highly divergent homeobox
Tssr164078 X 111697069 to 111697127 58 - TSS region transcription start site region 164078
Tssr5673 X 111768406 to 111768415 9 - TSS region transcription start site region 5673
Gm14898 X 111830621 to 111831265 644 + pseudogene predicted gene 14898
Gm14899 X 111860628 to 111861175 547 + pseudogene predicted gene 14899
Gm45194 X 111891389 to 112240590 349201 + protein coding gene predicted gene 45194
Cpgi22918 X 111894397 to 111895605 1208 CpG island CpG island 22918
Tssr161886 X 111894951 to 111894962 11 + TSS region transcription start site region 161886
Tssr161887 X 111944396 to 111944410 14 + TSS region transcription start site region 161887
Tex16 X 112011007 to 112127326 116319 + protein coding gene testis expressed gene 16
Gm14900 X 112012720 to 112013452 732 + pseudogene predicted gene 14900
Gm6335 X 112162554 to 112163747 1193 + pseudogene predicted gene 6335
4933403O08Rik X 112239049 to 112243852 4803 + protein coding gene RIKEN cDNA 4933403O08 gene
Gm5393 X 112302196 to 112302467 271 + pseudogene predicted pseudogene 5393
Tssr161888 X 112311351 to 112311363 12 + TSS region transcription start site region 161888
Apool X 112311352 to 112372755 61403 + protein coding gene apolipoprotein O-like
Tssr161889 X 112311375 to 112311407 32 + TSS region transcription start site region 161889
Tssr164079 X 112314408 to 112314420 12 - TSS region transcription start site region 164079
Satl1 X 112384305 to 112406779 22474 - protein coding gene spermidine/spermine N1-acetyl transferase-like 1
Tssr164080 X 112384535 to 112384543 8 - TSS region transcription start site region 164080
Tssr164081 X 112407053 to 112407072 19 - TSS region transcription start site region 164081
Gm6418 X 112459033 to 112462574 3541 - pseudogene predicted gene 6418
Gm14908 X 112465421 to 112466628 1207 + pseudogene predicted gene 14908
Tssr161890 X 112495266 to 112495281 15 + TSS region transcription start site region 161890
2010106E10Rik X 112495274 to 112558343 63069 + protein coding gene RIKEN cDNA 2010106E10 gene
Tssr161891 X 112497064 to 112497068 4 + TSS region transcription start site region 161891
Tssr161892 X 112512418 to 112512441 23 + TSS region transcription start site region 161892
Tssr5674 X 112521782 to 112521784 2 + TSS region transcription start site region 5674
Tssr161893 X 112558124 to 112558133 9 + TSS region transcription start site region 161893
Cpgi22920 X 112600426 to 112601996 1570 CpG island CpG island 22920
Zfp711 X 112600526 to 112635070 34544 + protein coding gene zinc finger protein 711
Tssr161894 X 112600722 to 112600738 16 + TSS region transcription start site region 161894
Tssr161895 X 112600824 to 112600835 11 + TSS region transcription start site region 161895
Pof1b X 112638431 to 112698651 60220 - protein coding gene premature ovarian failure 1B
Gm14921 X 112660521 to 112661428 907 - pseudogene predicted gene 14921
Tssr164082 X 112698350 to 112698373 23 - TSS region transcription start site region 164082
Tssr164083 X 112698375 to 112698386 11 - TSS region transcription start site region 164083
Tssr164084 X 112698387 to 112698399 12 - TSS region transcription start site region 164084
Tssr164085 X 112698414 to 112698485 71 - TSS region transcription start site region 164085
Tssr164086 X 112698642 to 112698657 15 - TSS region transcription start site region 164086
Tssr164087 X 112698664 to 112698689 25 - TSS region transcription start site region 164087
Gm14922 X 112773953 to 112774115 162 - pseudogene predicted gene 14922
Gm14923 X 112774104 to 112775727 1623 + pseudogene predicted gene 14923
Gm6427 X 112791142 to 112792120 978 + pseudogene predicted gene 6427
Gm6429 X 112822222 to 112822696 474 - pseudogene predicted gene 6429
Gm14937 X 112958619 to 112958826 207 + pseudogene predicted gene 14937
Gm14938 X 112967089 to 112968031 942 + pseudogene predicted gene 14938
Gm14936 X 112980864 to 113009754 28890 - lincRNA gene predicted gene 14936
Gm14939 X 113034193 to 113035654 1461 - pseudogene predicted gene 14939
Chm X 113040593 to 113185517 144924 - protein coding gene choroidermia (RAB escort protein 1)
Mir361 X 113074824 to 113074893 69 - miRNA gene microRNA 361
Tssr164088 X 113099457 to 113099476 19 - TSS region transcription start site region 164088
Tssr164089 X 113171974 to 113171983 9 - TSS region transcription start site region 164089
Tssr164090 X 113185485 to 113185522 37 - TSS region transcription start site region 164090
Gm7405 X 113226287 to 113227320 1033 - pseudogene predicted gene 7405