Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:106197101-107027393

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pgk1 X 106187100 to 106203699 16599 + protein coding gene phosphoglycerate kinase 1
Taf9b X 106206883 to 106221158 14275 - protein coding gene TATA-box binding protein associated factor 9B
Tssr164020 X 106208087 to 106208109 22 - TSS region transcription start site region 164020
Cpgi22909 X 106219276 to 106220048 772 CpG island CpG island 22909
Tssr164021 X 106219630 to 106219658 28 - TSS region transcription start site region 164021
Tssr164022 X 106219682 to 106219693 11 - TSS region transcription start site region 164022
Tssr164023 X 106221145 to 106221169 24 - TSS region transcription start site region 164023
Fnd3c2 X 106235246 to 106255372 20126 - protein coding gene fibronectin type III domain containing 3C2
Tssr5670 X 106254197 to 106254198 1 + TSS region transcription start site region 5670
Tssr164024 X 106255367 to 106255376 9 - TSS region transcription start site region 164024
Gm14852 X 106271205 to 106272982 1777 - pseudogene predicted gene 14852
Gm14857 X 106281915 to 106285096 3181 - pseudogene predicted gene 14857
Gm5133 X 106306381 to 106309725 3344 - pseudogene predicted pseudogene 5133
Mir6382 X 106309826 to 106309935 109 + miRNA gene microRNA 6382
Tssr164025 X 106312935 to 106312955 20 - TSS region transcription start site region 164025
Gm14876 X 106337590 to 106341715 4125 - pseudogene predicted gene 14876
Gm6325 X 106360456 to 106384071 23615 - pseudogene predicted gene 6325
Tssr164026 X 106387424 to 106387426 2 - TSS region transcription start site region 164026
Fndc3c1 X 106420041 to 106485401 65360 - protein coding gene fibronectin type III domain containing 3C1
Gm27428 X 106426057 to 106426166 109 + miRNA gene predicted gene, 27428
Tssr164027 X 106485137 to 106485164 27 - TSS region transcription start site region 164027
Tssr164028 X 106485168 to 106485187 19 - TSS region transcription start site region 164028
Cpgi22910 X 106485171 to 106485579 408 CpG island CpG island 22910
Tssr164029 X 106485191 to 106485212 21 - TSS region transcription start site region 164029
Tssr164030 X 106485214 to 106485259 45 - TSS region transcription start site region 164030
Tssr164031 X 106485367 to 106485424 57 - TSS region transcription start site region 164031
Cysltr1 X 106576509 to 106603679 27170 - protein coding gene cysteinyl leukotriene receptor 1
Tssr161796 X 106583184 to 106583187 3 + TSS region transcription start site region 161796
Gm5127 X 106583186 to 106710557 127371 + protein coding gene predicted gene 5127
Gm24622 X 106587481 to 106587642 161 - snRNA gene predicted gene, 24622
Tssr164032 X 106603456 to 106603485 29 - TSS region transcription start site region 164032
Tssr164033 X 106603538 to 106603551 13 - TSS region transcription start site region 164033
Tssr164034 X 106603600 to 106603617 17 - TSS region transcription start site region 164034
Tssr164035 X 106603620 to 106603631 11 - TSS region transcription start site region 164035
Tssr164036 X 106603677 to 106603702 25 - TSS region transcription start site region 164036
Tssr164037 X 106603709 to 106603718 9 - TSS region transcription start site region 164037
Gm14877 X 106611903 to 106612775 872 + pseudogene predicted gene 14877
Gm14878 X 106612101 to 106612393 292 + pseudogene predicted gene 14878
Gm14879 X 106632797 to 106633303 506 - pseudogene predicted gene 14879
Gm9200 X 106641381 to 106642734 1353 - pseudogene predicted gene 9200
Gm24491 X 106649913 to 106650019 106 - snRNA gene predicted gene, 24491
Gm22102 X 106697078 to 106697198 120 + miRNA gene predicted gene, 22102
Tssr161797 X 106703845 to 106703865 20 + TSS region transcription start site region 161797
Tssr161798 X 106703866 to 106703897 31 + TSS region transcription start site region 161798
Tssr161799 X 106703905 to 106703916 11 + TSS region transcription start site region 161799
Tssr161800 X 106703964 to 106703975 11 + TSS region transcription start site region 161800
Gm14882 X 106755333 to 106755550 217 + pseudogene predicted gene 14882
Gm14881 X 106755736 to 106756141 405 + pseudogene predicted gene 14881
Gm14880 X 106821940 to 106822231 291 + pseudogene predicted gene 14880
DXMit84 X 106834205 to 106834402 197 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 84
Rtl3 X 106837082 to 106840643 3561 - protein coding gene retrotransposon Gag like 3
Tssr164038 X 106840530 to 106840554 24 - TSS region transcription start site region 164038
Tssr164039 X 106840572 to 106840581 9 - TSS region transcription start site region 164039
Tssr161801 X 106920599 to 106920613 14 + TSS region transcription start site region 161801
Tssr161802 X 106920618 to 106920632 14 + TSS region transcription start site region 161802
Lpar4 X 106920625 to 106933899 13274 + protein coding gene lysophosphatidic acid receptor 4
Tssr161803 X 106920643 to 106920699 56 + TSS region transcription start site region 161803
Tssr161804 X 106920756 to 106920786 30 + TSS region transcription start site region 161804