Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:105896172-108616173

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atrx X 105797615 to 105929403 131788 - protein coding gene ATRX, chromatin remodeler
E030036C24Rik X 105897558 to 105898875 1317 unclassified gene RIKEN cDNA E030036C24 gene
Cpgi22905 X 105928293 to 105929460 1167 CpG island CpG island 22905
Tssr164010 X 105928539 to 105928542 3 - TSS region transcription start site region 164010
Tssr164011 X 105928547 to 105928583 36 - TSS region transcription start site region 164011
Tssr164012 X 105929304 to 105929321 17 - TSS region transcription start site region 164012
Tssr164013 X 105929333 to 105929382 49 - TSS region transcription start site region 164013
Tssr164014 X 105929397 to 105929408 11 - TSS region transcription start site region 164014
Magt1 X 105968084 to 106011899 43815 - protein coding gene magnesium transporter 1
Tssr164015 X 106010943 to 106010947 4 - TSS region transcription start site region 164015
Cpgi22906 X 106011492 to 106011918 426 CpG island CpG island 22906
Tssr164016 X 106011766 to 106011818 52 - TSS region transcription start site region 164016
Tssr164017 X 106011826 to 106011839 13 - TSS region transcription start site region 164017
Tssr164018 X 106011874 to 106011891 17 - TSS region transcription start site region 164018
Tssr161754 X 106012126 to 106012130 4 + TSS region transcription start site region 161754
Tssr161755 X 106015699 to 106015759 60 + TSS region transcription start site region 161755
Cox7b X 106015700 to 106022450 6750 + protein coding gene cytochrome c oxidase subunit 7B
Tssr161756 X 106015764 to 106015766 2 + TSS region transcription start site region 161756
Cpgi22907 X 106027010 to 106027414 404 CpG island CpG island 22907
Tssr161757 X 106027259 to 106027293 34 + TSS region transcription start site region 161757
Atp7a X 106027276 to 106124926 97650 + protein coding gene ATPase, Cu++ transporting, alpha polypeptide
Tssr161758 X 106027300 to 106027323 23 + TSS region transcription start site region 161758
Tssr161759 X 106027592 to 106027596 4 + TSS region transcription start site region 161759
Tssr161760 X 106045851 to 106045864 13 + TSS region transcription start site region 161760
Gm11123 X 106060224 to 106062215 1991 unclassified gene predicted gene 11123
Tssr161761 X 106081239 to 106081246 7 + TSS region transcription start site region 161761
Tssr161762 X 106085197 to 106085213 16 + TSS region transcription start site region 161762
Tssr161763 X 106085364 to 106085376 12 + TSS region transcription start site region 161763
Tssr161764 X 106091209 to 106091218 9 + TSS region transcription start site region 161764
Tssr161765 X 106105158 to 106105183 25 + TSS region transcription start site region 161765
Tssr161766 X 106125514 to 106125526 12 + TSS region transcription start site region 161766
Tssr161767 X 106125587 to 106125594 7 + TSS region transcription start site region 161767
Tssr161768 X 106125993 to 106126009 16 + TSS region transcription start site region 161768
Tssr161769 X 106126718 to 106126734 16 + TSS region transcription start site region 161769
Tssr161770 X 106126804 to 106126825 21 + TSS region transcription start site region 161770
Tssr161771 X 106126829 to 106126848 19 + TSS region transcription start site region 161771
Tssr161772 X 106126850 to 106126871 21 + TSS region transcription start site region 161772
Tssr161773 X 106126876 to 106126921 45 + TSS region transcription start site region 161773
Tssr161774 X 106126940 to 106126984 44 + TSS region transcription start site region 161774
Tssr161775 X 106126998 to 106127010 12 + TSS region transcription start site region 161775
Tssr161776 X 106127109 to 106127120 11 + TSS region transcription start site region 161776
Tssr161777 X 106127181 to 106127199 18 + TSS region transcription start site region 161777
Tssr161778 X 106127267 to 106127298 31 + TSS region transcription start site region 161778
Tssr161779 X 106135244 to 106135254 10 + TSS region transcription start site region 161779
Tssr161780 X 106137086 to 106137097 11 + TSS region transcription start site region 161780
Tssr164019 X 106143063 to 106143069 6 - TSS region transcription start site region 164019
Tssr161781 X 106143199 to 106143214 15 + TSS region transcription start site region 161781
Tssr161782 X 106143243 to 106143302 59 + TSS region transcription start site region 161782
Tlr13 X 106143275 to 106160493 17218 + protein coding gene toll-like receptor 13
Tssr161783 X 106143685 to 106143694 9 + TSS region transcription start site region 161783
Tssr161784 X 106143872 to 106143877 5 + TSS region transcription start site region 161784
Tssr161785 X 106146642 to 106146652 10 + TSS region transcription start site region 161785
Tssr161786 X 106149660 to 106149668 8 + TSS region transcription start site region 161786
Tssr161787 X 106156743 to 106156755 12 + TSS region transcription start site region 161787
Tssr161788 X 106156785 to 106156809 24 + TSS region transcription start site region 161788
Tssr161789 X 106156829 to 106156847 18 + TSS region transcription start site region 161789
Tssr161790 X 106156849 to 106156876 27 + TSS region transcription start site region 161790
Tssr161791 X 106157099 to 106157111 12 + TSS region transcription start site region 161791
Tssr161792 X 106157434 to 106157449 15 + TSS region transcription start site region 161792
Gm14856 X 106176314 to 106176926 612 + pseudogene predicted gene 14856
DXMit64 X 106185674 to 106185804 130 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 64
DXMit64.2 X 106185775 to 106185984 209 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 64.2
Cpgi22908 X 106186801 to 106187351 550 CpG island CpG island 22908
Tssr5669 X 106186928 to 106186935 7 + TSS region transcription start site region 5669
Pgk1 X 106187100 to 106203699 16599 + protein coding gene phosphoglycerate kinase 1
Tssr161793 X 106187137 to 106187179 42 + TSS region transcription start site region 161793
Tssr161794 X 106187200 to 106187212 12 + TSS region transcription start site region 161794
Tssr161795 X 106188005 to 106188023 18 + TSS region transcription start site region 161795
Taf9b X 106206883 to 106221158 14275 - protein coding gene TATA-box binding protein associated factor 9B
Tssr164020 X 106208087 to 106208109 22 - TSS region transcription start site region 164020
Cpgi22909 X 106219276 to 106220048 772 CpG island CpG island 22909
Tssr164021 X 106219630 to 106219658 28 - TSS region transcription start site region 164021
Tssr164022 X 106219682 to 106219693 11 - TSS region transcription start site region 164022
Tssr164023 X 106221145 to 106221169 24 - TSS region transcription start site region 164023
Fnd3c2 X 106235246 to 106255372 20126 - protein coding gene fibronectin type III domain containing 3C2
Tssr5670 X 106254197 to 106254198 1 + TSS region transcription start site region 5670
Tssr164024 X 106255367 to 106255376 9 - TSS region transcription start site region 164024
Gm14852 X 106271205 to 106272982 1777 - pseudogene predicted gene 14852
Gm14857 X 106281915 to 106285096 3181 - pseudogene predicted gene 14857
Gm5133 X 106306381 to 106309725 3344 - pseudogene predicted pseudogene 5133
Mir6382 X 106309826 to 106309935 109 + miRNA gene microRNA 6382
Tssr164025 X 106312935 to 106312955 20 - TSS region transcription start site region 164025
Gm14876 X 106337590 to 106341715 4125 - pseudogene predicted gene 14876
Gm6325 X 106360456 to 106384071 23615 - pseudogene predicted gene 6325
Tssr164026 X 106387424 to 106387426 2 - TSS region transcription start site region 164026
Fndc3c1 X 106420041 to 106485401 65360 - protein coding gene fibronectin type III domain containing 3C1
Gm27428 X 106426057 to 106426166 109 + miRNA gene predicted gene, 27428
Tssr164027 X 106485137 to 106485164 27 - TSS region transcription start site region 164027
Tssr164028 X 106485168 to 106485187 19 - TSS region transcription start site region 164028
Cpgi22910 X 106485171 to 106485579 408 CpG island CpG island 22910
Tssr164029 X 106485191 to 106485212 21 - TSS region transcription start site region 164029
Tssr164030 X 106485214 to 106485259 45 - TSS region transcription start site region 164030
Tssr164031 X 106485367 to 106485424 57 - TSS region transcription start site region 164031
Cysltr1 X 106576509 to 106603679 27170 - protein coding gene cysteinyl leukotriene receptor 1
Tssr161796 X 106583184 to 106583187 3 + TSS region transcription start site region 161796
Gm5127 X 106583186 to 106710557 127371 + protein coding gene predicted gene 5127
Gm24622 X 106587481 to 106587642 161 - snRNA gene predicted gene, 24622
Tssr164032 X 106603456 to 106603485 29 - TSS region transcription start site region 164032
Tssr164033 X 106603538 to 106603551 13 - TSS region transcription start site region 164033
Tssr164034 X 106603600 to 106603617 17 - TSS region transcription start site region 164034
Tssr164035 X 106603620 to 106603631 11 - TSS region transcription start site region 164035
Tssr164036 X 106603677 to 106603702 25 - TSS region transcription start site region 164036
Tssr164037 X 106603709 to 106603718 9 - TSS region transcription start site region 164037
Gm14877 X 106611903 to 106612775 872 + pseudogene predicted gene 14877
Gm14878 X 106612101 to 106612393 292 + pseudogene predicted gene 14878
Gm14879 X 106632797 to 106633303 506 - pseudogene predicted gene 14879
Gm9200 X 106641381 to 106642734 1353 - pseudogene predicted gene 9200
Gm24491 X 106649913 to 106650019 106 - snRNA gene predicted gene, 24491
Gm22102 X 106697078 to 106697198 120 + miRNA gene predicted gene, 22102
Tssr161797 X 106703845 to 106703865 20 + TSS region transcription start site region 161797
Tssr161798 X 106703866 to 106703897 31 + TSS region transcription start site region 161798
Tssr161799 X 106703905 to 106703916 11 + TSS region transcription start site region 161799
Tssr161800 X 106703964 to 106703975 11 + TSS region transcription start site region 161800
Gm14882 X 106755333 to 106755550 217 + pseudogene predicted gene 14882
Gm14881 X 106755736 to 106756141 405 + pseudogene predicted gene 14881
Gm14880 X 106821940 to 106822231 291 + pseudogene predicted gene 14880
DXMit84 X 106834205 to 106834402 197 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 84
Rtl3 X 106837082 to 106840643 3561 - protein coding gene retrotransposon Gag like 3
Tssr164038 X 106840530 to 106840554 24 - TSS region transcription start site region 164038
Tssr164039 X 106840572 to 106840581 9 - TSS region transcription start site region 164039
Tssr161801 X 106920599 to 106920613 14 + TSS region transcription start site region 161801
Tssr161802 X 106920618 to 106920632 14 + TSS region transcription start site region 161802
Lpar4 X 106920625 to 106933899 13274 + protein coding gene lysophosphatidic acid receptor 4
Tssr161803 X 106920643 to 106920699 56 + TSS region transcription start site region 161803
Tssr161804 X 106920756 to 106920786 30 + TSS region transcription start site region 161804
Tssr161805 X 107088452 to 107088466 14 + TSS region transcription start site region 161805
P2ry10 X 107088492 to 107104974 16482 + protein coding gene purinergic receptor P2Y, G-protein coupled 10
Tssr161806 X 107089311 to 107089337 26 + TSS region transcription start site region 161806
Tssr161807 X 107089342 to 107089383 41 + TSS region transcription start site region 161807
Tssr161808 X 107089386 to 107089409 23 + TSS region transcription start site region 161808
Tssr161809 X 107089632 to 107089641 9 + TSS region transcription start site region 161809
Tssr161810 X 107089642 to 107089656 14 + TSS region transcription start site region 161810
Tssr161811 X 107089664 to 107089680 16 + TSS region transcription start site region 161811
Tssr161812 X 107089689 to 107089699 10 + TSS region transcription start site region 161812
Tssr161813 X 107148904 to 107148963 59 + TSS region transcription start site region 161813
P2ry10b X 107148927 to 107173661 24734 + protein coding gene purinergic receptor P2Y, G-protein coupled 10B
Tssr161814 X 107148969 to 107148980 11 + TSS region transcription start site region 161814
Tssr161815 X 107148986 to 107149006 20 + TSS region transcription start site region 161815
Tssr161816 X 107149021 to 107149030 9 + TSS region transcription start site region 161816
Tssr161817 X 107149032 to 107149051 19 + TSS region transcription start site region 161817
Tssr161818 X 107149060 to 107149072 12 + TSS region transcription start site region 161818
Tssr161819 X 107149464 to 107149500 36 + TSS region transcription start site region 161819
Tssr161820 X 107149580 to 107149605 25 + TSS region transcription start site region 161820
Tssr5671 X 107149645 to 107149656 11 + TSS region transcription start site region 5671
Tssr161821 X 107172294 to 107172298 4 + TSS region transcription start site region 161821
Gm14834 X 107174760 to 107175472 712 - pseudogene predicted gene 14834
Gm14836 X 107233330 to 107233800 470 + pseudogene predicted gene 14836
Tssr161822 X 107255704 to 107255714 10 + TSS region transcription start site region 161822
Tssr161823 X 107255772 to 107255782 10 + TSS region transcription start site region 161823
Gpr174 X 107255878 to 107296769 40891 + protein coding gene G protein-coupled receptor 174
Tssr161824 X 107256031 to 107256064 33 + TSS region transcription start site region 161824
Tssr161825 X 107256066 to 107256087 21 + TSS region transcription start site region 161825
Tssr161826 X 107256156 to 107256167 11 + TSS region transcription start site region 161826
Tssr161827 X 107256172 to 107256173 1 + TSS region transcription start site region 161827
Gm9208 X 107279015 to 107279962 947 - pseudogene predicted gene 9208
Gm14833 X 107344586 to 107345612 1026 + pseudogene predicted gene 14833
Gm5392 X 107354806 to 107355434 628 - pseudogene predicted gene 5392
Itm2a X 107397195 to 107403360 6165 - protein coding gene integral membrane protein 2A
Tssr164040 X 107397315 to 107397326 11 - TSS region transcription start site region 164040
Tssr161828 X 107397727 to 107397758 31 + TSS region transcription start site region 161828
Cpgi22911 X 107402926 to 107403314 388 CpG island CpG island 22911
Tssr164041 X 107403295 to 107403404 109 - TSS region transcription start site region 164041
Tssr164042 X 107403631 to 107403651 20 - TSS region transcription start site region 164042
Gm14835 X 107405894 to 107406208 314 - pseudogene predicted gene 14835
Tssr161829 X 107542565 to 107542577 12 + TSS region transcription start site region 161829
4933401B06Rik X 107542582 to 107543800 1218 + pseudogene RIKEN cDNA 4933401B06 gene
Tssr161830 X 107542587 to 107542595 8 + TSS region transcription start site region 161830
Cpgi22912 X 107589587 to 107590120 533 CpG island CpG island 22912
Tssr161831 X 107667956 to 107667985 29 + TSS region transcription start site region 161831
Tbx22 X 107667964 to 107688978 21014 + protein coding gene T-box 22
Tssr161832 X 107676837 to 107676857 20 + TSS region transcription start site region 161832
2610002M06Rik X 107782751 to 107816334 33583 - protein coding gene RIKEN cDNA 2610002M06 gene
Tssr161833 X 107792583 to 107792609 26 + TSS region transcription start site region 161833
Tent5d X 107792590 to 107872909 80319 + protein coding gene terminal nucleotidyltransferase 5D
Cpgi22913 X 107816145 to 107816582 437 CpG island CpG island 22913
Tssr164043 X 107816238 to 107816337 99 - TSS region transcription start site region 164043
Tssr164044 X 107816379 to 107816402 23 - TSS region transcription start site region 164044
Tssr161834 X 107816500 to 107816520 20 + TSS region transcription start site region 161834
Gm732 X 107945735 to 107948436 2701 - protein coding gene predicted gene 732
Tssr164045 X 107948432 to 107948443 11 - TSS region transcription start site region 164045
Tssr161835 X 108056224 to 108056229 5 + TSS region transcription start site region 161835
Gm14849 X 108060304 to 108062619 2315 + pseudogene predicted gene 14849
Tssr161836 X 108109976 to 108109978 2 + TSS region transcription start site region 161836
Gm378 X 108405794 to 108406547 753 + pseudogene predicted pseudogene 378
Gm9218 X 108446389 to 108449268 2879 + pseudogene predicted gene 9218
Tssr161837 X 108484392 to 108484420 28 + TSS region transcription start site region 161837
Tssr161838 X 108484421 to 108484432 11 + TSS region transcription start site region 161838
Tssr161839 X 108484435 to 108484440 5 + TSS region transcription start site region 161839
Gm17888 X 108484618 to 108485427 809 + pseudogene predicted gene, 17888