Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:104889610-106839721

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr161741 X 104947694 to 104947696 2 + TSS region transcription start site region 161741
Gm6285 X 104947785 to 104948282 497 + pseudogene predicted gene 6285
Gm33486 X 105001441 to 105003896 2455 - lncRNA gene predicted gene, 33486
DXMit245 X 105018710 to 105018795 85 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-245
Gm22090 X 105020268 to 105020378 110 - snRNA gene predicted gene, 22090
Gm9673 X 105032586 to 105033366 780 + pseudogene predicted gene 9673
Gm39533 X 105035071 to 105036594 1523 + pseudogene predicted gene, 39533
5530601H04Rik X 105040854 to 105070124 29270 - lncRNA gene RIKEN cDNA 5530601H04 gene
Tssr163991 X 105070053 to 105070103 50 - TSS region transcription start site region 163991
Tssr163992 X 105070104 to 105070123 19 - TSS region transcription start site region 163992
Cpgi22900 X 105079620 to 105079940 320 CpG island CpG island 22900
Tssr161742 X 105079735 to 105079754 19 + TSS region transcription start site region 161742
Pbdc1 X 105079756 to 105117090 37334 + protein coding gene polysaccharide biosynthesis domain containing 1
Tssr161743 X 105079764 to 105079803 39 + TSS region transcription start site region 161743
Tssr161744 X 105080081 to 105080098 17 + TSS region transcription start site region 161744
Tssr161745 X 105080208 to 105080231 23 + TSS region transcription start site region 161745
Tssr161746 X 105082741 to 105082773 32 + TSS region transcription start site region 161746
Tssr161747 X 105086959 to 105086964 5 + TSS region transcription start site region 161747
Tssr161748 X 105106357 to 105106364 7 + TSS region transcription start site region 161748
Cpgi22901 X 105120224 to 105121882 1658 CpG island CpG island 22901
Tssr161749 X 105120353 to 105120354 1 + TSS region transcription start site region 161749
Tssr161750 X 105120361 to 105120429 68 + TSS region transcription start site region 161750
Magee1 X 105120378 to 105123927 3549 + protein coding gene melanoma antigen, family E, 1
Gm45946 X 105127958 to 105136223 8265 - lncRNA gene predicted gene, 45946
Tssr161751 X 105140753 to 105140758 5 + TSS region transcription start site region 161751
Gm6292 X 105140849 to 105141940 1091 + pseudogene predicted gene 6292
Gm33605 X 105146942 to 105152370 5428 - lncRNA gene predicted gene, 33605
Cpgi22902 X 105152071 to 105152222 151 CpG island CpG island 22902
E530001F21Rik X 105164632 to 105165361 729 - pseudogene RIKEN cDNA E530001F21 gene
Tssr5667 X 105166687 to 105166691 4 + TSS region transcription start site region 5667
Gm39531 X 105176119 to 105257485 81366 - lncRNA gene predicted gene, 39531
Rpl30-ps9 X 105278637 to 105278981 344 - pseudogene ribosomal protein L30, pseudogene 9
Tssr163993 X 105279046 to 105279057 11 - TSS region transcription start site region 163993
Tssr163994 X 105307988 to 105308005 17 - TSS region transcription start site region 163994
Gm14824 X 105327739 to 105328475 736 - pseudogene predicted gene 14824
Mir384 X 105344282 to 105344369 87 - miRNA gene microRNA 384
5330434G04Rik X 105372994 to 105391754 18760 - lincRNA gene RIKEN cDNA 5330434G04 gene
Tssr163995 X 105374808 to 105374813 5 - TSS region transcription start site region 163995
Mir325 X 105379082 to 105379179 97 - miRNA gene microRNA 325
Tssr163996 X 105391726 to 105391762 36 - TSS region transcription start site region 163996
Tssr163997 X 105391770 to 105391781 11 - TSS region transcription start site region 163997
Rab9b-ps1 X 105482098 to 105482703 605 + pseudogene RAB9B, member RAS oncogene family, pseudogene 1
Tssr161752 X 105499768 to 105499773 5 + TSS region transcription start site region 161752
Cypt2 X 105499772 to 105500639 867 + protein coding gene cysteine-rich perinuclear theca 2
Gm14823 X 105567901 to 105568138 237 - pseudogene predicted gene 14823
Tssr5668 X 105655541 to 105655544 3 + TSS region transcription start site region 5668
Gm14855 X 105688024 to 105688215 191 + pseudogene predicted gene 14855
Gm14854 X 105706966 to 105707806 840 + pseudogene predicted gene 14854
Gm7117 X 105725128 to 105725514 386 - pseudogene predicted pseudogene 7117
Cpgi22903 X 105763890 to 105764228 338 CpG island CpG island 22903
Cpgi22904 X 105764232 to 105765314 1082 CpG island CpG island 22904
Tssr161753 X 105764262 to 105764267 5 + TSS region transcription start site region 161753
Fgf16 X 105764279 to 105774939 10660 + protein coding gene fibroblast growth factor 16
Atrx X 105797615 to 105929403 131788 - protein coding gene ATRX, chromatin remodeler
Gm26020 X 105819883 to 105820065 182 + snRNA gene predicted gene, 26020
Gm14853 X 105844465 to 105845013 548 - pseudogene predicted gene 14853
Tssr163998 X 105845925 to 105845943 18 - TSS region transcription start site region 163998
Tssr163999 X 105849074 to 105849075 1 - TSS region transcription start site region 163999
Tssr164000 X 105855908 to 105855922 14 - TSS region transcription start site region 164000
Tssr164001 X 105855944 to 105855967 23 - TSS region transcription start site region 164001
Tssr164002 X 105856549 to 105856566 17 - TSS region transcription start site region 164002
DXMit213 X 105864610 to 105864721 111 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 213
Tssr164003 X 105867907 to 105867925 18 - TSS region transcription start site region 164003
Gm23656 X 105873824 to 105873935 111 + snRNA gene predicted gene, 23656
DXErtd223e X 105873855 to 105874067 212 DNA segment DNA segment, Chr X, ERATO Doi 223, expressed
Tssr164004 X 105875068 to 105875087 19 - TSS region transcription start site region 164004
Tssr164005 X 105875407 to 105875425 18 - TSS region transcription start site region 164005
Tssr164006 X 105875471 to 105875493 22 - TSS region transcription start site region 164006
Tssr164007 X 105875500 to 105875517 17 - TSS region transcription start site region 164007
Tssr164008 X 105875621 to 105875634 13 - TSS region transcription start site region 164008
Tssr164009 X 105876026 to 105876040 14 - TSS region transcription start site region 164009
E030036C24Rik X 105897558 to 105898875 1317 unclassified gene RIKEN cDNA E030036C24 gene
Cpgi22905 X 105928293 to 105929460 1167 CpG island CpG island 22905
Tssr164010 X 105928539 to 105928542 3 - TSS region transcription start site region 164010
Tssr164011 X 105928547 to 105928583 36 - TSS region transcription start site region 164011
Tssr164012 X 105929304 to 105929321 17 - TSS region transcription start site region 164012
Tssr164013 X 105929333 to 105929382 49 - TSS region transcription start site region 164013
Tssr164014 X 105929397 to 105929408 11 - TSS region transcription start site region 164014
Magt1 X 105968084 to 106011899 43815 - protein coding gene magnesium transporter 1
Tssr164015 X 106010943 to 106010947 4 - TSS region transcription start site region 164015
Cpgi22906 X 106011492 to 106011918 426 CpG island CpG island 22906
Tssr164016 X 106011766 to 106011818 52 - TSS region transcription start site region 164016
Tssr164017 X 106011826 to 106011839 13 - TSS region transcription start site region 164017
Tssr164018 X 106011874 to 106011891 17 - TSS region transcription start site region 164018
Tssr161754 X 106012126 to 106012130 4 + TSS region transcription start site region 161754
Tssr161755 X 106015699 to 106015759 60 + TSS region transcription start site region 161755
Cox7b X 106015700 to 106022450 6750 + protein coding gene cytochrome c oxidase subunit 7B
Tssr161756 X 106015764 to 106015766 2 + TSS region transcription start site region 161756
Cpgi22907 X 106027010 to 106027414 404 CpG island CpG island 22907
Tssr161757 X 106027259 to 106027293 34 + TSS region transcription start site region 161757
Atp7a X 106027276 to 106124926 97650 + protein coding gene ATPase, Cu++ transporting, alpha polypeptide
Tssr161758 X 106027300 to 106027323 23 + TSS region transcription start site region 161758
Tssr161759 X 106027592 to 106027596 4 + TSS region transcription start site region 161759
Tssr161760 X 106045851 to 106045864 13 + TSS region transcription start site region 161760
Gm11123 X 106060224 to 106062215 1991 unclassified gene predicted gene 11123
Tssr161761 X 106081239 to 106081246 7 + TSS region transcription start site region 161761
Tssr161762 X 106085197 to 106085213 16 + TSS region transcription start site region 161762
Tssr161763 X 106085364 to 106085376 12 + TSS region transcription start site region 161763
Tssr161764 X 106091209 to 106091218 9 + TSS region transcription start site region 161764
Tssr161765 X 106105158 to 106105183 25 + TSS region transcription start site region 161765
Tssr161766 X 106125514 to 106125526 12 + TSS region transcription start site region 161766
Tssr161767 X 106125587 to 106125594 7 + TSS region transcription start site region 161767
Tssr161768 X 106125993 to 106126009 16 + TSS region transcription start site region 161768
Tssr161769 X 106126718 to 106126734 16 + TSS region transcription start site region 161769
Tssr161770 X 106126804 to 106126825 21 + TSS region transcription start site region 161770
Tssr161771 X 106126829 to 106126848 19 + TSS region transcription start site region 161771
Tssr161772 X 106126850 to 106126871 21 + TSS region transcription start site region 161772
Tssr161773 X 106126876 to 106126921 45 + TSS region transcription start site region 161773
Tssr161774 X 106126940 to 106126984 44 + TSS region transcription start site region 161774
Tssr161775 X 106126998 to 106127010 12 + TSS region transcription start site region 161775
Tssr161776 X 106127109 to 106127120 11 + TSS region transcription start site region 161776
Tssr161777 X 106127181 to 106127199 18 + TSS region transcription start site region 161777
Tssr161778 X 106127267 to 106127298 31 + TSS region transcription start site region 161778
Tssr161779 X 106135244 to 106135254 10 + TSS region transcription start site region 161779
Tssr161780 X 106137086 to 106137097 11 + TSS region transcription start site region 161780
Tssr164019 X 106143063 to 106143069 6 - TSS region transcription start site region 164019
Tssr161781 X 106143199 to 106143214 15 + TSS region transcription start site region 161781
Tssr161782 X 106143243 to 106143302 59 + TSS region transcription start site region 161782
Tlr13 X 106143275 to 106160493 17218 + protein coding gene toll-like receptor 13
Tssr161783 X 106143685 to 106143694 9 + TSS region transcription start site region 161783
Tssr161784 X 106143872 to 106143877 5 + TSS region transcription start site region 161784
Tssr161785 X 106146642 to 106146652 10 + TSS region transcription start site region 161785
Tssr161786 X 106149660 to 106149668 8 + TSS region transcription start site region 161786
Tssr161787 X 106156743 to 106156755 12 + TSS region transcription start site region 161787
Tssr161788 X 106156785 to 106156809 24 + TSS region transcription start site region 161788
Tssr161789 X 106156829 to 106156847 18 + TSS region transcription start site region 161789
Tssr161790 X 106156849 to 106156876 27 + TSS region transcription start site region 161790
Tssr161791 X 106157099 to 106157111 12 + TSS region transcription start site region 161791
Tssr161792 X 106157434 to 106157449 15 + TSS region transcription start site region 161792
Gm14856 X 106176314 to 106176926 612 + pseudogene predicted gene 14856
DXMit64 X 106185674 to 106185804 130 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 64
DXMit64.2 X 106185775 to 106185984 209 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 64.2
Cpgi22908 X 106186801 to 106187351 550 CpG island CpG island 22908
Tssr5669 X 106186928 to 106186935 7 + TSS region transcription start site region 5669
Pgk1 X 106187100 to 106203699 16599 + protein coding gene phosphoglycerate kinase 1
Tssr161793 X 106187137 to 106187179 42 + TSS region transcription start site region 161793
Tssr161794 X 106187200 to 106187212 12 + TSS region transcription start site region 161794
Tssr161795 X 106188005 to 106188023 18 + TSS region transcription start site region 161795
Taf9b X 106206883 to 106221158 14275 - protein coding gene TATA-box binding protein associated factor 9B
Tssr164020 X 106208087 to 106208109 22 - TSS region transcription start site region 164020
Cpgi22909 X 106219276 to 106220048 772 CpG island CpG island 22909
Tssr164021 X 106219630 to 106219658 28 - TSS region transcription start site region 164021
Tssr164022 X 106219682 to 106219693 11 - TSS region transcription start site region 164022
Tssr164023 X 106221145 to 106221169 24 - TSS region transcription start site region 164023
Fnd3c2 X 106235246 to 106255372 20126 - protein coding gene fibronectin type III domain containing 3C2
Tssr5670 X 106254197 to 106254198 1 + TSS region transcription start site region 5670
Tssr164024 X 106255367 to 106255376 9 - TSS region transcription start site region 164024
Gm14852 X 106271205 to 106272982 1777 - pseudogene predicted gene 14852
Gm14857 X 106281915 to 106285096 3181 - pseudogene predicted gene 14857
Gm5133 X 106306381 to 106309725 3344 - pseudogene predicted pseudogene 5133
Mir6382 X 106309826 to 106309935 109 + miRNA gene microRNA 6382
Tssr164025 X 106312935 to 106312955 20 - TSS region transcription start site region 164025
Gm14876 X 106337590 to 106341715 4125 - pseudogene predicted gene 14876
Gm6325 X 106360456 to 106384071 23615 - pseudogene predicted gene 6325
Tssr164026 X 106387424 to 106387426 2 - TSS region transcription start site region 164026
Fndc3c1 X 106420041 to 106485401 65360 - protein coding gene fibronectin type III domain containing 3C1
Gm27428 X 106426057 to 106426166 109 + miRNA gene predicted gene, 27428
Tssr164027 X 106485137 to 106485164 27 - TSS region transcription start site region 164027
Tssr164028 X 106485168 to 106485187 19 - TSS region transcription start site region 164028
Cpgi22910 X 106485171 to 106485579 408 CpG island CpG island 22910
Tssr164029 X 106485191 to 106485212 21 - TSS region transcription start site region 164029
Tssr164030 X 106485214 to 106485259 45 - TSS region transcription start site region 164030
Tssr164031 X 106485367 to 106485424 57 - TSS region transcription start site region 164031
Cysltr1 X 106576509 to 106603679 27170 - protein coding gene cysteinyl leukotriene receptor 1
Tssr161796 X 106583184 to 106583187 3 + TSS region transcription start site region 161796
Gm5127 X 106583186 to 106710557 127371 + protein coding gene predicted gene 5127
Gm24622 X 106587481 to 106587642 161 - snRNA gene predicted gene, 24622
Tssr164032 X 106603456 to 106603485 29 - TSS region transcription start site region 164032
Tssr164033 X 106603538 to 106603551 13 - TSS region transcription start site region 164033
Tssr164034 X 106603600 to 106603617 17 - TSS region transcription start site region 164034
Tssr164035 X 106603620 to 106603631 11 - TSS region transcription start site region 164035
Tssr164036 X 106603677 to 106603702 25 - TSS region transcription start site region 164036
Tssr164037 X 106603709 to 106603718 9 - TSS region transcription start site region 164037
Gm14877 X 106611903 to 106612775 872 + pseudogene predicted gene 14877
Gm14878 X 106612101 to 106612393 292 + pseudogene predicted gene 14878
Gm14879 X 106632797 to 106633303 506 - pseudogene predicted gene 14879
Gm9200 X 106641381 to 106642734 1353 - pseudogene predicted gene 9200
Gm24491 X 106649913 to 106650019 106 - snRNA gene predicted gene, 24491
Gm22102 X 106697078 to 106697198 120 + miRNA gene predicted gene, 22102
Tssr161797 X 106703845 to 106703865 20 + TSS region transcription start site region 161797
Tssr161798 X 106703866 to 106703897 31 + TSS region transcription start site region 161798
Tssr161799 X 106703905 to 106703916 11 + TSS region transcription start site region 161799
Tssr161800 X 106703964 to 106703975 11 + TSS region transcription start site region 161800
Gm14882 X 106755333 to 106755550 217 + pseudogene predicted gene 14882
Gm14881 X 106755736 to 106756141 405 + pseudogene predicted gene 14881
Gm14880 X 106821940 to 106822231 291 + pseudogene predicted gene 14880
DXMit84 X 106834205 to 106834402 197 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 84
Rtl3 X 106837082 to 106840643 3561 - protein coding gene retrotransposon Gag like 3