Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:104827958-105436223

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700121L16Rik X 104816776 to 104842455 25679 + lincRNA gene RIKEN cDNA 1700121L16 gene
DXMit177 X 104835315 to 104835438 123 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 177
Magee2 X 104854952 to 104857267 2315 - protein coding gene melanoma antigen, family E, 2
Cpgi22899 X 104856785 to 104857321 536 CpG island CpG island 22899
Tssr163989 X 104857206 to 104857220 14 - TSS region transcription start site region 163989
Tssr163990 X 104857228 to 104857282 54 - TSS region transcription start site region 163990
Tssr161741 X 104947694 to 104947696 2 + TSS region transcription start site region 161741
Gm6285 X 104947785 to 104948282 497 + pseudogene predicted gene 6285
Gm33486 X 105001441 to 105003896 2455 - lncRNA gene predicted gene, 33486
DXMit245 X 105018710 to 105018795 85 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-245
Gm22090 X 105020268 to 105020378 110 - snRNA gene predicted gene, 22090
Gm9673 X 105032586 to 105033366 780 + pseudogene predicted gene 9673
Gm39533 X 105035071 to 105036594 1523 + pseudogene predicted gene, 39533
5530601H04Rik X 105040854 to 105070124 29270 - lncRNA gene RIKEN cDNA 5530601H04 gene
Tssr163991 X 105070053 to 105070103 50 - TSS region transcription start site region 163991
Tssr163992 X 105070104 to 105070123 19 - TSS region transcription start site region 163992
Cpgi22900 X 105079620 to 105079940 320 CpG island CpG island 22900
Tssr161742 X 105079735 to 105079754 19 + TSS region transcription start site region 161742
Pbdc1 X 105079756 to 105117090 37334 + protein coding gene polysaccharide biosynthesis domain containing 1
Tssr161743 X 105079764 to 105079803 39 + TSS region transcription start site region 161743
Tssr161744 X 105080081 to 105080098 17 + TSS region transcription start site region 161744
Tssr161745 X 105080208 to 105080231 23 + TSS region transcription start site region 161745
Tssr161746 X 105082741 to 105082773 32 + TSS region transcription start site region 161746
Tssr161747 X 105086959 to 105086964 5 + TSS region transcription start site region 161747
Tssr161748 X 105106357 to 105106364 7 + TSS region transcription start site region 161748
Cpgi22901 X 105120224 to 105121882 1658 CpG island CpG island 22901
Tssr161749 X 105120353 to 105120354 1 + TSS region transcription start site region 161749
Tssr161750 X 105120361 to 105120429 68 + TSS region transcription start site region 161750
Magee1 X 105120378 to 105123927 3549 + protein coding gene melanoma antigen, family E, 1
Gm45946 X 105127958 to 105136223 8265 - lncRNA gene predicted gene, 45946
Tssr161751 X 105140753 to 105140758 5 + TSS region transcription start site region 161751
Gm6292 X 105140849 to 105141940 1091 + pseudogene predicted gene 6292
Gm33605 X 105146942 to 105152370 5428 - lncRNA gene predicted gene, 33605
Cpgi22902 X 105152071 to 105152222 151 CpG island CpG island 22902
E530001F21Rik X 105164632 to 105165361 729 - pseudogene RIKEN cDNA E530001F21 gene
Tssr5667 X 105166687 to 105166691 4 + TSS region transcription start site region 5667
Gm39531 X 105176119 to 105257485 81366 - lncRNA gene predicted gene, 39531
Rpl30-ps9 X 105278637 to 105278981 344 - pseudogene ribosomal protein L30, pseudogene 9
Tssr163993 X 105279046 to 105279057 11 - TSS region transcription start site region 163993
Tssr163994 X 105307988 to 105308005 17 - TSS region transcription start site region 163994
Gm14824 X 105327739 to 105328475 736 - pseudogene predicted gene 14824
Mir384 X 105344282 to 105344369 87 - miRNA gene microRNA 384
5330434G04Rik X 105372994 to 105391754 18760 - lincRNA gene RIKEN cDNA 5330434G04 gene
Tssr163995 X 105374808 to 105374813 5 - TSS region transcription start site region 163995
Mir325 X 105379082 to 105379179 97 - miRNA gene microRNA 325
Tssr163996 X 105391726 to 105391762 36 - TSS region transcription start site region 163996
Tssr163997 X 105391770 to 105391781 11 - TSS region transcription start site region 163997