Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:104532988-106083005

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114 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zdhhc15 X 104536969 to 104671064 134095 - protein coding gene zinc finger, DHHC domain containing 15
Vcfq1 X 104611487 to 104611487 0 QTL vasocontractile function QTL 1
Gm22430 X 104616865 to 104616971 106 + snoRNA gene predicted gene, 22430
Gm39530 X 104667419 to 104719612 52193 + lncRNA gene predicted gene, 39530
Cpgi22898 X 104670606 to 104671073 467 CpG island CpG island 22898
Tssr163984 X 104670786 to 104670832 46 - TSS region transcription start site region 163984
Tssr5666 X 104670843 to 104670858 15 - TSS region transcription start site region 5666
Tssr163985 X 104670955 to 104670978 23 - TSS region transcription start site region 163985
Tssr163986 X 104670984 to 104671013 29 - TSS region transcription start site region 163986
Tssr163987 X 104671014 to 104671034 20 - TSS region transcription start site region 163987
Tssr163988 X 104671048 to 104671071 23 - TSS region transcription start site region 163988
Gm14822 X 104746482 to 104746772 290 + pseudogene predicted gene 14822
1700121L16Rik X 104816776 to 104842455 25679 + lincRNA gene RIKEN cDNA 1700121L16 gene
DXMit177 X 104835315 to 104835438 123 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 177
Magee2 X 104854952 to 104857267 2315 - protein coding gene melanoma antigen, family E, 2
Cpgi22899 X 104856785 to 104857321 536 CpG island CpG island 22899
Tssr163989 X 104857206 to 104857220 14 - TSS region transcription start site region 163989
Tssr163990 X 104857228 to 104857282 54 - TSS region transcription start site region 163990
Tssr161741 X 104947694 to 104947696 2 + TSS region transcription start site region 161741
Gm6285 X 104947785 to 104948282 497 + pseudogene predicted gene 6285
Gm33486 X 105001441 to 105003896 2455 - lncRNA gene predicted gene, 33486
DXMit245 X 105018710 to 105018795 85 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-245
Gm22090 X 105020268 to 105020378 110 - snRNA gene predicted gene, 22090
Gm9673 X 105032586 to 105033366 780 + pseudogene predicted gene 9673
Gm39533 X 105035071 to 105036594 1523 + pseudogene predicted gene, 39533
5530601H04Rik X 105040854 to 105070124 29270 - lncRNA gene RIKEN cDNA 5530601H04 gene
Tssr163991 X 105070053 to 105070103 50 - TSS region transcription start site region 163991
Tssr163992 X 105070104 to 105070123 19 - TSS region transcription start site region 163992
Cpgi22900 X 105079620 to 105079940 320 CpG island CpG island 22900
Tssr161742 X 105079735 to 105079754 19 + TSS region transcription start site region 161742
Pbdc1 X 105079756 to 105117090 37334 + protein coding gene polysaccharide biosynthesis domain containing 1
Tssr161743 X 105079764 to 105079803 39 + TSS region transcription start site region 161743
Tssr161744 X 105080081 to 105080098 17 + TSS region transcription start site region 161744
Tssr161745 X 105080208 to 105080231 23 + TSS region transcription start site region 161745
Tssr161746 X 105082741 to 105082773 32 + TSS region transcription start site region 161746
Tssr161747 X 105086959 to 105086964 5 + TSS region transcription start site region 161747
Tssr161748 X 105106357 to 105106364 7 + TSS region transcription start site region 161748
Cpgi22901 X 105120224 to 105121882 1658 CpG island CpG island 22901
Tssr161749 X 105120353 to 105120354 1 + TSS region transcription start site region 161749
Tssr161750 X 105120361 to 105120429 68 + TSS region transcription start site region 161750
Magee1 X 105120378 to 105123927 3549 + protein coding gene melanoma antigen, family E, 1
Gm45946 X 105127958 to 105136223 8265 - lncRNA gene predicted gene, 45946
Tssr161751 X 105140753 to 105140758 5 + TSS region transcription start site region 161751
Gm6292 X 105140849 to 105141940 1091 + pseudogene predicted gene 6292
Gm33605 X 105146942 to 105152370 5428 - lncRNA gene predicted gene, 33605
Cpgi22902 X 105152071 to 105152222 151 CpG island CpG island 22902
E530001F21Rik X 105164632 to 105165361 729 - pseudogene RIKEN cDNA E530001F21 gene
Tssr5667 X 105166687 to 105166691 4 + TSS region transcription start site region 5667
Gm39531 X 105176119 to 105257485 81366 - lncRNA gene predicted gene, 39531
Rpl30-ps9 X 105278637 to 105278981 344 - pseudogene ribosomal protein L30, pseudogene 9
Tssr163993 X 105279046 to 105279057 11 - TSS region transcription start site region 163993
Tssr163994 X 105307988 to 105308005 17 - TSS region transcription start site region 163994
Gm14824 X 105327739 to 105328475 736 - pseudogene predicted gene 14824
Mir384 X 105344282 to 105344369 87 - miRNA gene microRNA 384
5330434G04Rik X 105372994 to 105391754 18760 - lincRNA gene RIKEN cDNA 5330434G04 gene
Tssr163995 X 105374808 to 105374813 5 - TSS region transcription start site region 163995
Mir325 X 105379082 to 105379179 97 - miRNA gene microRNA 325
Tssr163996 X 105391726 to 105391762 36 - TSS region transcription start site region 163996
Tssr163997 X 105391770 to 105391781 11 - TSS region transcription start site region 163997
Rab9b-ps1 X 105482098 to 105482703 605 + pseudogene RAB9B, member RAS oncogene family, pseudogene 1
Tssr161752 X 105499768 to 105499773 5 + TSS region transcription start site region 161752
Cypt2 X 105499772 to 105500639 867 + protein coding gene cysteine-rich perinuclear theca 2
Gm14823 X 105567901 to 105568138 237 - pseudogene predicted gene 14823
Tssr5668 X 105655541 to 105655544 3 + TSS region transcription start site region 5668
Gm14855 X 105688024 to 105688215 191 + pseudogene predicted gene 14855
Gm14854 X 105706966 to 105707806 840 + pseudogene predicted gene 14854
Gm7117 X 105725128 to 105725514 386 - pseudogene predicted pseudogene 7117
Cpgi22903 X 105763890 to 105764228 338 CpG island CpG island 22903
Cpgi22904 X 105764232 to 105765314 1082 CpG island CpG island 22904
Tssr161753 X 105764262 to 105764267 5 + TSS region transcription start site region 161753
Fgf16 X 105764279 to 105774939 10660 + protein coding gene fibroblast growth factor 16
Atrx X 105797615 to 105929403 131788 - protein coding gene ATRX, chromatin remodeler
Gm26020 X 105819883 to 105820065 182 + snRNA gene predicted gene, 26020
Gm14853 X 105844465 to 105845013 548 - pseudogene predicted gene 14853
Tssr163998 X 105845925 to 105845943 18 - TSS region transcription start site region 163998
Tssr163999 X 105849074 to 105849075 1 - TSS region transcription start site region 163999
Tssr164000 X 105855908 to 105855922 14 - TSS region transcription start site region 164000
Tssr164001 X 105855944 to 105855967 23 - TSS region transcription start site region 164001
Tssr164002 X 105856549 to 105856566 17 - TSS region transcription start site region 164002
DXMit213 X 105864610 to 105864721 111 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 213
Tssr164003 X 105867907 to 105867925 18 - TSS region transcription start site region 164003
Gm23656 X 105873824 to 105873935 111 + snRNA gene predicted gene, 23656
DXErtd223e X 105873855 to 105874067 212 DNA segment DNA segment, Chr X, ERATO Doi 223, expressed
Tssr164004 X 105875068 to 105875087 19 - TSS region transcription start site region 164004
Tssr164005 X 105875407 to 105875425 18 - TSS region transcription start site region 164005
Tssr164006 X 105875471 to 105875493 22 - TSS region transcription start site region 164006
Tssr164007 X 105875500 to 105875517 17 - TSS region transcription start site region 164007
Tssr164008 X 105875621 to 105875634 13 - TSS region transcription start site region 164008
Tssr164009 X 105876026 to 105876040 14 - TSS region transcription start site region 164009
E030036C24Rik X 105897558 to 105898875 1317 unclassified gene RIKEN cDNA E030036C24 gene
Cpgi22905 X 105928293 to 105929460 1167 CpG island CpG island 22905
Tssr164010 X 105928539 to 105928542 3 - TSS region transcription start site region 164010
Tssr164011 X 105928547 to 105928583 36 - TSS region transcription start site region 164011
Tssr164012 X 105929304 to 105929321 17 - TSS region transcription start site region 164012
Tssr164013 X 105929333 to 105929382 49 - TSS region transcription start site region 164013
Tssr164014 X 105929397 to 105929408 11 - TSS region transcription start site region 164014
Magt1 X 105968084 to 106011899 43815 - protein coding gene magnesium transporter 1
Tssr164015 X 106010943 to 106010947 4 - TSS region transcription start site region 164015
Cpgi22906 X 106011492 to 106011918 426 CpG island CpG island 22906
Tssr164016 X 106011766 to 106011818 52 - TSS region transcription start site region 164016
Tssr164017 X 106011826 to 106011839 13 - TSS region transcription start site region 164017
Tssr164018 X 106011874 to 106011891 17 - TSS region transcription start site region 164018
Tssr161754 X 106012126 to 106012130 4 + TSS region transcription start site region 161754
Tssr161755 X 106015699 to 106015759 60 + TSS region transcription start site region 161755
Cox7b X 106015700 to 106022450 6750 + protein coding gene cytochrome c oxidase subunit 7B
Tssr161756 X 106015764 to 106015766 2 + TSS region transcription start site region 161756
Cpgi22907 X 106027010 to 106027414 404 CpG island CpG island 22907
Tssr161757 X 106027259 to 106027293 34 + TSS region transcription start site region 161757
Atp7a X 106027276 to 106124926 97650 + protein coding gene ATPase, Cu++ transporting, alpha polypeptide
Tssr161758 X 106027300 to 106027323 23 + TSS region transcription start site region 161758
Tssr161759 X 106027592 to 106027596 4 + TSS region transcription start site region 161759
Tssr161760 X 106045851 to 106045864 13 + TSS region transcription start site region 161760
Gm11123 X 106060224 to 106062215 1991 unclassified gene predicted gene 11123
Tssr161761 X 106081239 to 106081246 7 + TSS region transcription start site region 161761