Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:104506776-105152455

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D830012I24Rik X 104508411 to 104512226 3815 unclassified non-coding RNA gene RIKEN cDNA D830012I24 gene
Tssr161740 X 104508903 to 104508917 14 + TSS region transcription start site region 161740
Gm17963 X 104515985 to 104516567 582 + pseudogene predicted gene, 17963
Zdhhc15 X 104536969 to 104671064 134095 - protein coding gene zinc finger, DHHC domain containing 15
Vcfq1 X 104611487 to 104611487 0 QTL vasocontractile function QTL 1
Gm22430 X 104616865 to 104616971 106 + snoRNA gene predicted gene, 22430
Gm39530 X 104667419 to 104719612 52193 + lncRNA gene predicted gene, 39530
Cpgi22898 X 104670606 to 104671073 467 CpG island CpG island 22898
Tssr163984 X 104670786 to 104670832 46 - TSS region transcription start site region 163984
Tssr5666 X 104670843 to 104670858 15 - TSS region transcription start site region 5666
Tssr163985 X 104670955 to 104670978 23 - TSS region transcription start site region 163985
Tssr163986 X 104670984 to 104671013 29 - TSS region transcription start site region 163986
Tssr163987 X 104671014 to 104671034 20 - TSS region transcription start site region 163987
Tssr163988 X 104671048 to 104671071 23 - TSS region transcription start site region 163988
Gm14822 X 104746482 to 104746772 290 + pseudogene predicted gene 14822
1700121L16Rik X 104816776 to 104842455 25679 + lincRNA gene RIKEN cDNA 1700121L16 gene
DXMit177 X 104835315 to 104835438 123 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 177
Magee2 X 104854952 to 104857267 2315 - protein coding gene melanoma antigen, family E, 2
Cpgi22899 X 104856785 to 104857321 536 CpG island CpG island 22899
Tssr163989 X 104857206 to 104857220 14 - TSS region transcription start site region 163989
Tssr163990 X 104857228 to 104857282 54 - TSS region transcription start site region 163990
Tssr161741 X 104947694 to 104947696 2 + TSS region transcription start site region 161741
Gm6285 X 104947785 to 104948282 497 + pseudogene predicted gene 6285
Gm33486 X 105001441 to 105003896 2455 - lncRNA gene predicted gene, 33486
DXMit245 X 105018710 to 105018795 85 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-245
Gm22090 X 105020268 to 105020378 110 - snRNA gene predicted gene, 22090
Gm9673 X 105032586 to 105033366 780 + pseudogene predicted gene 9673
Gm39533 X 105035071 to 105036594 1523 + pseudogene predicted gene, 39533
5530601H04Rik X 105040854 to 105070124 29270 - lncRNA gene RIKEN cDNA 5530601H04 gene
Tssr163991 X 105070053 to 105070103 50 - TSS region transcription start site region 163991
Tssr163992 X 105070104 to 105070123 19 - TSS region transcription start site region 163992
Cpgi22900 X 105079620 to 105079940 320 CpG island CpG island 22900
Tssr161742 X 105079735 to 105079754 19 + TSS region transcription start site region 161742
Pbdc1 X 105079756 to 105117090 37334 + protein coding gene polysaccharide biosynthesis domain containing 1
Tssr161743 X 105079764 to 105079803 39 + TSS region transcription start site region 161743
Tssr161744 X 105080081 to 105080098 17 + TSS region transcription start site region 161744
Tssr161745 X 105080208 to 105080231 23 + TSS region transcription start site region 161745
Tssr161746 X 105082741 to 105082773 32 + TSS region transcription start site region 161746
Tssr161747 X 105086959 to 105086964 5 + TSS region transcription start site region 161747
Tssr161748 X 105106357 to 105106364 7 + TSS region transcription start site region 161748
Cpgi22901 X 105120224 to 105121882 1658 CpG island CpG island 22901
Tssr161749 X 105120353 to 105120354 1 + TSS region transcription start site region 161749
Tssr161750 X 105120361 to 105120429 68 + TSS region transcription start site region 161750
Magee1 X 105120378 to 105123927 3549 + protein coding gene melanoma antigen, family E, 1
Gm45946 X 105127958 to 105136223 8265 - lncRNA gene predicted gene, 45946
Tssr161751 X 105140753 to 105140758 5 + TSS region transcription start site region 161751
Gm6292 X 105140849 to 105141940 1091 + pseudogene predicted gene 6292
Gm33605 X 105146942 to 105152370 5428 - lncRNA gene predicted gene, 33605
Cpgi22902 X 105152071 to 105152222 151 CpG island CpG island 22902