Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:10387558-13337749

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219 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spha1 X 10399986 to 40832775 30432789 QTL sperm head anomaly 1
DXMit89 X 10399986 to 10400132 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 89
4933416E14Rik X 10415301 to 10417238 1937 - pseudogene RIKEN cDNA 4933416E14 gene
Tssr160537 X 10416640 to 10416662 22 + TSS region transcription start site region 160537
Tssr160538 X 10416675 to 10416682 7 + TSS region transcription start site region 160538
Cpgi22601 X 10484853 to 10485422 569 CpG island CpG island 22601
Tssr160539 X 10485121 to 10485163 42 + TSS region transcription start site region 160539
Tspan7 X 10485158 to 10596605 111447 + protein coding gene tetraspanin 7
Cpgi22602 X 10485773 to 10486050 277 CpG island CpG island 22602
Tssr160540 X 10487823 to 10487831 8 + TSS region transcription start site region 160540
Gm25885 X 10510048 to 10510156 108 + rRNA gene predicted gene, 25885
Tssr160541 X 10518624 to 10518627 3 + TSS region transcription start site region 160541
Tssr160542 X 10582134 to 10582137 3 + TSS region transcription start site region 160542
Tssr160543 X 10582145 to 10582154 9 + TSS region transcription start site region 160543
Tssr160544 X 10585549 to 10585572 23 + TSS region transcription start site region 160544
Tssr160545 X 10595702 to 10595787 85 + TSS region transcription start site region 160545
Tssr162980 X 10595718 to 10595752 34 - TSS region transcription start site region 162980
Tssr160546 X 10596004 to 10596030 26 + TSS region transcription start site region 160546
Cpgi22603 X 10650550 to 10650726 176 CpG island CpG island 22603
Gm5931 X 10660522 to 10660998 476 + pseudogene predicted pseudogene 5931
Gm14470 X 10680964 to 10681429 465 + pseudogene predicted gene 14470
Gm14480 X 10696932 to 10697364 432 - pseudogene predicted gene 14480
Tssr5591 X 10697431 to 10697434 3 - TSS region transcription start site region 5591
Gm10489 X 10707176 to 10717242 10066 - lincRNA gene predicted gene 10489
Tssr160547 X 10715036 to 10715057 21 + TSS region transcription start site region 160547
Cpgi22604 X 10717194 to 10717662 468 CpG island CpG island 22604
Mid1ip1 X 10717365 to 10719702 2337 + protein coding gene Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
Tssr160548 X 10717439 to 10717450 11 + TSS region transcription start site region 160548
Tssr160549 X 10717451 to 10717491 40 + TSS region transcription start site region 160549
Tssr162981 X 10717451 to 10717456 5 - TSS region transcription start site region 162981
Gm14493 X 10717473 to 10718710 1237 - antisense lncRNA gene predicted gene 14493
Tssr160550 X 10717502 to 10717514 12 + TSS region transcription start site region 160550
Tssr160551 X 10717578 to 10717596 18 + TSS region transcription start site region 160551
Cpgi22605 X 10717983 to 10718699 716 CpG island CpG island 22605
Tssr160552 X 10718534 to 10718543 9 + TSS region transcription start site region 160552
DXMit102 X 10793966 to 10794095 129 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 102
Gm14473 X 10865077 to 10865633 556 - pseudogene predicted gene 14473
Gm33984 X 10884060 to 10912210 28150 + lncRNA gene predicted gene, 33984
Tssr160553 X 10911557 to 10911565 8 + TSS region transcription start site region 160553
Gm39494 X 10989143 to 10991957 2814 - lncRNA gene predicted gene, 39494
Gm14485 X 11020515 to 11021007 492 - pseudogene predicted gene 14485
Tssr162982 X 11126591 to 11126614 23 - TSS region transcription start site region 162982
Gm14481 X 11220607 to 11221235 628 + pseudogene predicted gene 14481
DXMit27 X 11247634 to 11247773 139 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 27
H2al1a X 11299257 to 11299757 500 + protein coding gene H2A histone family member L1A
H2al1b X 11302432 to 11302921 489 + protein coding gene H2A histone family member L1B
H2al1c X 11305655 to 11305972 317 + protein coding gene H2A histone family member L1C
H2al1d X 11308824 to 11309141 317 + protein coding gene H2A histone family member L1D
H2al1e X 11311934 to 11312427 493 + protein coding gene H2A histone family member L1E
H2al1f X 11315158 to 11315475 317 + protein coding gene H2A histone family member L1F
H2al1g X 11318256 to 11318764 508 + protein coding gene H2A histone family member L1G
H2al1h X 11321492 to 11321809 317 + protein coding gene H2A histone family member L1H
H2al1i X 11324659 to 11324976 317 + protein coding gene H2A histone family member L1I
H2al1j X 11327822 to 11328151 329 + protein coding gene H2A histone family member L1J
Gm39495 X 11362034 to 11363510 1476 + lncRNA gene predicted gene, 39495
Gm34077 X 11395860 to 11418640 22780 - lncRNA gene predicted gene, 34077
Gm34138 X 11434263 to 11437179 2916 - lncRNA gene predicted gene, 34138
Gm39496 X 11487873 to 11525733 37860 - lncRNA gene predicted gene, 39496
8430439B09Rik X 11493925 to 11494290 365 unclassified gene RIKEN cDNA 8430439B09 gene
DXMit162 X 11513703 to 11513827 124 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 162
Gm34187 X 11528393 to 11533441 5048 - lncRNA gene predicted gene, 34187
Gm14515 X 11601354 to 11601569 215 + pseudogene predicted gene 14515
Cpgi22606 X 11664327 to 11665329 1002 CpG island CpG island 22606
Gm14513 X 11684002 to 11684124 122 - pseudogene predicted gene 14513
DXMit199 X 11695547 to 11695652 105 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-199
Cpgi22607 X 11806926 to 11807996 1070 CpG island CpG island 22607
Gm26314 X 11850484 to 11850590 106 + snRNA gene predicted gene, 26314
DXMit54 X 11862558 to 11862749 191 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 54
Rpl23a-ps13 X 11867390 to 11867759 369 + pseudogene ribosomal protein L23A, pseudogene 13
Gm14491 X 11913091 to 11913289 198 - pseudogene predicted gene 14491
Gm14512 X 11984468 to 11984697 229 + pseudogene predicted gene 14512
Cpgi22608 X 11998877 to 11999478 601 CpG island CpG island 22608
Wght11 X 12000000 to 60000000 48000000 QTL weight 11
Lgth13 X 12000000 to 60000000 48000000 QTL body length 13
Gm34301 X 12001761 to 12004263 2502 + lncRNA gene predicted gene, 34301
Cpgi22609 X 12005747 to 12007632 1885 CpG island CpG island 22609
Tssr160554 X 12005758 to 12005788 30 + TSS region transcription start site region 160554
Tssr160555 X 12005821 to 12005823 2 + TSS region transcription start site region 160555
Bcor X 12036740 to 12160355 123615 - protein coding gene BCL6 interacting corepressor
Tssr162983 X 12053625 to 12053629 4 - TSS region transcription start site region 162983
Tssr162984 X 12058623 to 12058636 13 - TSS region transcription start site region 162984
Tssr162985 X 12058752 to 12058766 14 - TSS region transcription start site region 162985
Tssr5592 X 12060510 to 12060511 1 + TSS region transcription start site region 5592
Cpgi22610 X 12076753 to 12077822 1069 CpG island CpG island 22610
Cpgi22611 X 12078446 to 12081660 3214 CpG island CpG island 22611
Tssr160556 X 12079208 to 12079223 15 + TSS region transcription start site region 160556
Tssr160557 X 12079260 to 12079270 10 + TSS region transcription start site region 160557
Tssr162986 X 12079269 to 12079276 7 - TSS region transcription start site region 162986
Tssr162987 X 12080052 to 12080078 26 - TSS region transcription start site region 162987
Tssr162988 X 12080545 to 12080561 16 - TSS region transcription start site region 162988
Tssr162989 X 12080575 to 12080582 7 - TSS region transcription start site region 162989
Gm46687 X 12080671 to 12120206 39535 + lncRNA gene predicted gene, 46687
Cpgi22612 X 12086919 to 12089186 2267 CpG island CpG island 22612
Tssr160558 X 12089032 to 12089055 23 + TSS region transcription start site region 160558
Cpgi22613 X 12089672 to 12090076 404 CpG island CpG island 22613
Cpgi22614 X 12091012 to 12092079 1067 CpG island CpG island 22614
Cpgi22615 X 12127607 to 12129118 1511 CpG island CpG island 22615
Tssr162990 X 12128356 to 12128367 11 - TSS region transcription start site region 162990
Tssr162991 X 12128386 to 12128412 26 - TSS region transcription start site region 162991
Cpgi22616 X 12129277 to 12129525 248 CpG island CpG island 22616
Cpgi22617 X 12133390 to 12133874 484 CpG island CpG island 22617
Cpgi22618 X 12134526 to 12136015 1489 CpG island CpG island 22618
Tssr160559 X 12136100 to 12136126 26 + TSS region transcription start site region 160559
Cpgi22619 X 12136372 to 12137693 1321 CpG island CpG island 22619
Tssr162992 X 12137137 to 12137161 24 - TSS region transcription start site region 162992
Cpgi22620 X 12139933 to 12140641 708 CpG island CpG island 22620
Cpgi22621 X 12151813 to 12152014 201 CpG island CpG island 22621
Cpgi22622 X 12155885 to 12156158 273 CpG island CpG island 22622
Tssr5593 X 12156496 to 12156537 41 + TSS region transcription start site region 5593
Tssr160560 X 12157708 to 12157712 4 + TSS region transcription start site region 160560
Cpgi22623 X 12158431 to 12159135 704 CpG island CpG island 22623
Cpgi22624 X 12159645 to 12160596 951 CpG island CpG island 22624
Tssr162993 X 12160455 to 12160479 24 - TSS region transcription start site region 162993
Tssr162994 X 12160492 to 12160523 31 - TSS region transcription start site region 162994
Gm14521 X 12179718 to 12180067 349 - pseudogene predicted gene 14521
Cpgi22625 X 12252463 to 12252719 256 CpG island CpG island 22625
DXMit205.2 X 12326540 to 12326660 120 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 205.2
DXMit205 X 12326643 to 12326804 161 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 205
Gm14635 X 12339782 to 12354996 15214 - lincRNA gene predicted gene 14635
Tssr162995 X 12354979 to 12355006 27 - TSS region transcription start site region 162995
DXMit103 X 12429717 to 12429863 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 103
DXMit224 X 12440280 to 12440395 115 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 224
DXMit206 X 12443815 to 12443917 102 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 206
Rpl30-ps11 X 12456886 to 12457230 344 - pseudogene ribosomal protein L30, pseudogene 11
Tssr162996 X 12457292 to 12457302 10 - TSS region transcription start site region 162996
Gm17861 X 12576987 to 12578406 1419 + pseudogene predicted gene, 17861
Cpgi22626 X 12587446 to 12588089 643 CpG island CpG island 22626
Tssr160561 X 12587791 to 12587846 55 + TSS region transcription start site region 160561
Atp6ap2 X 12587801 to 12617049 29248 + protein coding gene ATPase, H+ transporting, lysosomal accessory protein 2
Tssr160562 X 12587864 to 12587877 13 + TSS region transcription start site region 160562
Tssr160563 X 12609487 to 12609513 26 + TSS region transcription start site region 160563
Tssr160564 X 12615676 to 12615857 181 + TSS region transcription start site region 160564
Tssr162997 X 12616737 to 12616747 10 - TSS region transcription start site region 162997
Gm9432 X 12619474 to 12620232 758 - pseudogene predicted gene 9432
Tssr160565 X 12652238 to 12652241 3 + TSS region transcription start site region 160565
Tssr160566 X 12652248 to 12652262 14 + TSS region transcription start site region 160566
Cpgi22627 X 12652267 to 12652581 314 CpG island CpG island 22627
Tssr160567 X 12652272 to 12652286 14 + TSS region transcription start site region 160567
Gm4984 X 12652303 to 12652662 359 + pseudogene predicted pseudogene 4984
1810030O07Rik X 12654879 to 12673668 18789 - protein coding gene RIKEN cDNA 1810030O07 gene
Gm16265 X 12670635 to 12670742 107 + pseudogene predicted gene 16265
Cpgi22628 X 12673214 to 12673660 446 CpG island CpG island 22628
Tssr160568 X 12673275 to 12673290 15 + TSS region transcription start site region 160568
Tssr162998 X 12673540 to 12673583 43 - TSS region transcription start site region 162998
Med14 X 12675369 to 12762073 86704 - protein coding gene mediator complex subunit 14
Tssr162999 X 12677585 to 12677612 27 - TSS region transcription start site region 162999
Tssr163000 X 12732967 to 12732972 5 - TSS region transcription start site region 163000
Cpgi22629 X 12761364 to 12762648 1284 CpG island CpG island 22629
Tssr163001 X 12761783 to 12761842 59 - TSS region transcription start site region 163001
Tssr163002 X 12761954 to 12761969 15 - TSS region transcription start site region 163002
Tssr163003 X 12761996 to 12762040 44 - TSS region transcription start site region 163003
Tssr163004 X 12762069 to 12762080 11 - TSS region transcription start site region 163004
Tssr163005 X 12762090 to 12762113 23 - TSS region transcription start site region 163005
Tssr163006 X 12762120 to 12762125 5 - TSS region transcription start site region 163006
Tssr160569 X 12762245 to 12762293 48 + TSS region transcription start site region 160569
Gm14634 X 12762278 to 12821492 59214 + lncRNA gene predicted gene 14634
Tssr160570 X 12762466 to 12762470 4 + TSS region transcription start site region 160570
Tssr5594 X 12826328 to 12826330 2 + TSS region transcription start site region 5594
Tssr160571 X 12840414 to 12840433 19 + TSS region transcription start site region 160571
Gm25063 X 12870269 to 12870362 93 - miRNA gene predicted gene, 25063
Tssr160572 X 12888209 to 12888256 47 + TSS region transcription start site region 160572
Gm14524 X 12913910 to 12914592 682 - pseudogene predicted gene 14524
Cpgi22630 X 12936870 to 12937256 386 CpG island CpG island 22630
AA414768 X 12936872 to 12938128 1256 + pseudogene expressed sequence AA414768
Tssr160573 X 12936917 to 12936942 25 + TSS region transcription start site region 160573
Gm14534 X 12944610 to 12944966 356 - pseudogene predicted gene 14534
Tssr163007 X 12954717 to 12954722 5 - TSS region transcription start site region 163007
Gm41890 X 12967588 to 12994484 26896 - lncRNA gene predicted gene, 41890
4930500G05Rik X 12977854 to 12994980 17126 + lncRNA gene RIKEN cDNA 4930500G05 gene
Tssr160574 X 12977856 to 12977893 37 + TSS region transcription start site region 160574
Tssr163008 X 12994521 to 12994530 9 - TSS region transcription start site region 163008
Tssr163009 X 12994553 to 12994562 9 - TSS region transcription start site region 163009
Tssr163010 X 12994645 to 12994654 9 - TSS region transcription start site region 163010
Tssr163011 X 13014143 to 13014187 44 - TSS region transcription start site region 163011
Gm1549 X 13028060 to 13028276 216 unclassified gene predicted gene 1549
Cpgi22631 X 13041675 to 13042078 403 CpG island CpG island 22631
Tssr160575 X 13041799 to 13041836 37 + TSS region transcription start site region 160575
Tssr160576 X 13041838 to 13041852 14 + TSS region transcription start site region 160576
Tssr160577 X 13042005 to 13042051 46 + TSS region transcription start site region 160577
5730405O15Rik X 13042015 to 13045295 3280 + lncRNA gene RIKEN cDNA 5730405O15 gene
Cpgi22632 X 13070915 to 13073087 2172 CpG island CpG island 22632
Tssr160578 X 13071059 to 13071082 23 + TSS region transcription start site region 160578
Tssr160579 X 13071146 to 13071169 23 + TSS region transcription start site region 160579
Tssr160580 X 13071261 to 13071297 36 + TSS region transcription start site region 160580
Tssr160581 X 13071470 to 13071499 29 + TSS region transcription start site region 160581
Usp9x X 13071498 to 13173328 101830 + protein coding gene ubiquitin specific peptidase 9, X chromosome
Tssr160582 X 13071500 to 13071576 76 + TSS region transcription start site region 160582
Tssr160583 X 13071624 to 13071663 39 + TSS region transcription start site region 160583
Tssr163012 X 13071924 to 13071929 5 - TSS region transcription start site region 163012
Tssr160584 X 13071999 to 13072039 40 + TSS region transcription start site region 160584
Tssr160585 X 13072054 to 13072069 15 + TSS region transcription start site region 160585
Tssr163013 X 13072548 to 13072567 19 - TSS region transcription start site region 163013
Tssr160586 X 13072806 to 13072826 20 + TSS region transcription start site region 160586
Tssr160587 X 13159831 to 13159860 29 + TSS region transcription start site region 160587
Gm15027 X 13179443 to 13179580 137 + pseudogene predicted gene 15027
Gm14536 X 13189538 to 13189675 137 + pseudogene predicted gene 14536
Tssr160588 X 13202542 to 13202546 4 + TSS region transcription start site region 160588
Rpl3-ps1 X 13202571 to 13203780 1209 + pseudogene ribosomal protein L3, pseudogene 1
Tssr160589 X 13202601 to 13202619 18 + TSS region transcription start site region 160589
DXMit187 X 13212401 to 13212524 123 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 187