Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:103615657-105078856

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ftx X 103560910 to 103623754 62844 - lincRNA gene Ftx transcript, Xist regulator (non-protein coding)
Tssr163962 X 103616783 to 103616818 35 - TSS region transcription start site region 163962
Cpgi22889 X 103616807 to 103617108 301 CpG island CpG island 22889
Cpgi22890 X 103622325 to 103622677 352 CpG island CpG island 22890
Cpgi22891 X 103623544 to 103623865 321 CpG island CpG island 22891
Gm27321 X 103623551 to 103623755 204 + lncRNA gene predicted gene, 27321
Tssr163963 X 103623648 to 103623672 24 - TSS region transcription start site region 163963
Tssr163964 X 103623704 to 103623762 58 - TSS region transcription start site region 163964
Tssr161729 X 103630575 to 103630597 22 + TSS region transcription start site region 161729
Zcchc13 X 103630586 to 103631664 1078 + protein coding gene zinc finger, CCHC domain containing 13
Tssr161730 X 103630600 to 103630614 14 + TSS region transcription start site region 161730
DXNds3 X 103637152 to 103637260 108 DNA segment DNA segment, Chr X, Nuffield Department of Surgery 3
DXMit18 X 103637247 to 103637392 145 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 18
Gm14874 X 103643555 to 103644727 1172 - pseudogene predicted gene 14874
Tssr161731 X 103672563 to 103672565 2 + TSS region transcription start site region 161731
Tssr161732 X 103672663 to 103672690 27 + TSS region transcription start site region 161732
Gm14875 X 103680577 to 103680895 318 + pseudogene predicted gene 14875
Gm3943 X 103684615 to 103685332 717 + pseudogene predicted gene 3943
Cpgi22892 X 103695119 to 103695575 456 CpG island CpG island 22892
Slc16a2 X 103697414 to 103821983 124569 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 2
Tssr5664 X 103706041 to 103706042 1 + TSS region transcription start site region 5664
Tssr163965 X 103706322 to 103706333 11 - TSS region transcription start site region 163965
Gm6222 X 103762917 to 103763545 628 - pseudogene predicted pseudogene 6222
Tssr163966 X 103763547 to 103763553 6 - TSS region transcription start site region 163966
Gm37956 X 103771646 to 103773655 2009 - unclassified gene predicted gene, 37956
Gm14893 X 103778693 to 103779000 307 + pseudogene predicted gene 14893
Cpgi22893 X 103821243 to 103822002 759 CpG island CpG island 22893
Tssr163967 X 103821859 to 103821921 62 - TSS region transcription start site region 163967
Tssr163968 X 103821940 to 103821992 52 - TSS region transcription start site region 163968
DXMit171 X 103843187 to 103843352 165 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 171
Gm9164 X 103887599 to 103888612 1013 - pseudogene predicted gene 9164
Tssr163969 X 103888683 to 103888685 2 - TSS region transcription start site region 163969
Gm9166 X 103926431 to 103926984 553 - pseudogene predicted gene 9166
Rlim X 103957163 to 103981284 24121 - protein coding gene ring finger protein, LIM domain interacting
Tssr163970 X 103958258 to 103958304 46 - TSS region transcription start site region 163970
Tssr163971 X 103960860 to 103960864 4 - TSS region transcription start site region 163971
Tssr163972 X 103980150 to 103980199 49 - TSS region transcription start site region 163972
Cpgi22894 X 103980653 to 103981402 749 CpG island CpG island 22894
Tssr163973 X 103981134 to 103981148 14 - TSS region transcription start site region 163973
Tssr163974 X 103981168 to 103981181 13 - TSS region transcription start site region 163974
Tssr163975 X 103981229 to 103981238 9 - TSS region transcription start site region 163975
Tssr163976 X 103981242 to 103981287 45 - TSS region transcription start site region 163976
Gm14892 X 104001066 to 104001337 271 - pseudogene predicted gene 14892
Gm23378 X 104001373 to 104001479 106 - snRNA gene predicted gene, 23378
Tssr161733 X 104017406 to 104017410 4 + TSS region transcription start site region 161733
Tssr5665 X 104040541 to 104040544 3 + TSS region transcription start site region 5665
Gm22266 X 104070189 to 104070326 137 - snoRNA gene predicted gene, 22266
Gm24993 X 104076971 to 104077061 90 + miRNA gene predicted gene, 24993
Nexmif X 104077434 to 104201185 123751 - protein coding gene neurite extension and migration factor
DXMit158 X 104115942 to 104116072 130 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 158
Mir672 X 104116175 to 104116274 99 - miRNA gene microRNA 672
DXMit40 X 104146767 to 104146882 115 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 40
Cpgi22895 X 104199604 to 104201526 1922 CpG island CpG island 22895
Tssr161734 X 104200845 to 104200847 2 + TSS region transcription start site region 161734
Tssr163977 X 104201099 to 104201117 18 - TSS region transcription start site region 163977
Tssr163978 X 104201126 to 104201166 40 - TSS region transcription start site region 163978
Tssr163979 X 104201178 to 104201205 27 - TSS region transcription start site region 163979
Abcb7 X 104280657 to 104413856 133199 - protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 7
Vcp-rs X 104345829 to 104348234 2405 - pseudogene valosin containing protein, related sequence
Tssr163980 X 104348481 to 104348499 18 - TSS region transcription start site region 163980
Gm6238 X 104382042 to 104382506 464 - pseudogene predicted pseudogene 6238
Tssr163981 X 104382641 to 104382651 10 - TSS region transcription start site region 163981
Cpgi22896 X 104413382 to 104413981 599 CpG island CpG island 22896
Tssr163982 X 104413825 to 104413856 31 - TSS region transcription start site region 163982
Tssr163983 X 104413862 to 104413871 9 - TSS region transcription start site region 163983
Cpgi22897 X 104482738 to 104483264 526 CpG island CpG island 22897
Tssr161735 X 104482774 to 104482858 84 + TSS region transcription start site region 161735
Uprt X 104482782 to 104506262 23480 + protein coding gene uracil phosphoribosyltransferase
Tssr161736 X 104483121 to 104483157 36 + TSS region transcription start site region 161736
Tssr161737 X 104483162 to 104483193 31 + TSS region transcription start site region 161737
Tssr161738 X 104489035 to 104489039 4 + TSS region transcription start site region 161738
Tssr161739 X 104506682 to 104506699 17 + TSS region transcription start site region 161739
D830012I24Rik X 104508411 to 104512226 3815 unclassified non-coding RNA gene RIKEN cDNA D830012I24 gene
Tssr161740 X 104508903 to 104508917 14 + TSS region transcription start site region 161740
Gm17963 X 104515985 to 104516567 582 + pseudogene predicted gene, 17963
Zdhhc15 X 104536969 to 104671064 134095 - protein coding gene zinc finger, DHHC domain containing 15
Vcfq1 X 104611487 to 104611487 0 QTL vasocontractile function QTL 1
Gm22430 X 104616865 to 104616971 106 + snoRNA gene predicted gene, 22430
Gm39530 X 104667419 to 104719612 52193 + lncRNA gene predicted gene, 39530
Cpgi22898 X 104670606 to 104671073 467 CpG island CpG island 22898
Tssr163984 X 104670786 to 104670832 46 - TSS region transcription start site region 163984
Tssr5666 X 104670843 to 104670858 15 - TSS region transcription start site region 5666
Tssr163985 X 104670955 to 104670978 23 - TSS region transcription start site region 163985
Tssr163986 X 104670984 to 104671013 29 - TSS region transcription start site region 163986
Tssr163987 X 104671014 to 104671034 20 - TSS region transcription start site region 163987
Tssr163988 X 104671048 to 104671071 23 - TSS region transcription start site region 163988
Gm14822 X 104746482 to 104746772 290 + pseudogene predicted gene 14822
1700121L16Rik X 104816776 to 104842455 25679 + lincRNA gene RIKEN cDNA 1700121L16 gene
DXMit177 X 104835315 to 104835438 123 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 177
Magee2 X 104854952 to 104857267 2315 - protein coding gene melanoma antigen, family E, 2
Cpgi22899 X 104856785 to 104857321 536 CpG island CpG island 22899
Tssr163989 X 104857206 to 104857220 14 - TSS region transcription start site region 163989
Tssr163990 X 104857228 to 104857282 54 - TSS region transcription start site region 163990
Tssr161741 X 104947694 to 104947696 2 + TSS region transcription start site region 161741
Gm6285 X 104947785 to 104948282 497 + pseudogene predicted gene 6285
Gm33486 X 105001441 to 105003896 2455 - lncRNA gene predicted gene, 33486
DXMit245 X 105018710 to 105018795 85 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-245
Gm22090 X 105020268 to 105020378 110 - snRNA gene predicted gene, 22090
Gm9673 X 105032586 to 105033366 780 + pseudogene predicted gene 9673
Gm39533 X 105035071 to 105036594 1523 + pseudogene predicted gene, 39533
5530601H04Rik X 105040854 to 105070124 29270 - lncRNA gene RIKEN cDNA 5530601H04 gene
Tssr163991 X 105070053 to 105070103 50 - TSS region transcription start site region 163991
Tssr163992 X 105070104 to 105070123 19 - TSS region transcription start site region 163992