Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:103477150-103717316

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26992 X 103422010 to 103481705 59695 + protein coding gene predicted gene, 26992
Tsix X 103431517 to 103484957 53440 + antisense lncRNA gene X (inactive)-specific transcript, opposite strand
Xist X 103460373 to 103483233 22860 - lincRNA gene inactive X specific transcripts
Tssr163948 X 103478142 to 103478147 5 - TSS region transcription start site region 163948
Tssr163949 X 103480510 to 103480561 51 - TSS region transcription start site region 163949
Tssr163950 X 103480563 to 103480645 82 - TSS region transcription start site region 163950
Tssr163951 X 103480693 to 103480769 76 - TSS region transcription start site region 163951
Tssr163952 X 103480783 to 103480796 13 - TSS region transcription start site region 163952
Tssr163953 X 103480883 to 103480935 52 - TSS region transcription start site region 163953
Gm27520 X 103480946 to 103481026 80 + unclassified non-coding RNA gene predicted gene, 27520
Cpgi22887 X 103482077 to 103482247 170 CpG island CpG island 22887
Tssr163954 X 103482550 to 103482577 27 - TSS region transcription start site region 163954
Tssr161724 X 103482698 to 103482702 4 + TSS region transcription start site region 161724
Tssr163955 X 103482780 to 103482794 14 - TSS region transcription start site region 163955
Tssr163956 X 103482832 to 103482849 17 - TSS region transcription start site region 163956
Tssr163957 X 103483034 to 103483042 8 - TSS region transcription start site region 163957
Tssr163958 X 103483205 to 103483225 20 - TSS region transcription start site region 163958
Tssr163959 X 103483243 to 103483252 9 - TSS region transcription start site region 163959
Gm14861 X 103486934 to 103487388 454 + pseudogene predicted gene 14861
Tssr161725 X 103489431 to 103489442 11 + TSS region transcription start site region 161725
Rps12-ps1 X 103489517 to 103489917 400 + pseudogene ribosomal protein S12, pseudogene 1
Cpgi22888 X 103493343 to 103493904 561 CpG island CpG island 22888
Tssr163960 X 103493396 to 103493421 25 - TSS region transcription start site region 163960
Jpx X 103493558 to 103506425 12867 + lincRNA gene Jpx transcript, Xist activator (non-protein coding)
Tssr161726 X 103493564 to 103493592 28 + TSS region transcription start site region 161726
Gm27875 X 103493574 to 103493696 122 + unclassified non-coding RNA gene predicted gene, 27875
Tssr161727 X 103493615 to 103493625 10 + TSS region transcription start site region 161727
Tssr161728 X 103493769 to 103493782 13 + TSS region transcription start site region 161728
Gm9670 X 103506812 to 103507589 777 + pseudogene predicted gene 9670
Gm14860 X 103514922 to 103515350 428 + pseudogene predicted gene 14860
Gm9785 X 103525319 to 103525847 528 - pseudogene predicted pseudogene 9785
Gm9157 X 103529483 to 103529707 224 + pseudogene predicted gene 9157
Ftx X 103560910 to 103623754 62844 - lincRNA gene Ftx transcript, Xist regulator (non-protein coding)
Mir421 X 103572921 to 103572996 75 - miRNA gene microRNA 421
Mirc23 X 103572921 to 103573154 233 complex/cluster/region microRNA cluster 23, including Mir374b through Mir421
Mir374b X 103573060 to 103573154 94 - miRNA gene microRNA 374b
Mir374c X 103573085 to 103573133 48 + miRNA gene microRNA 374c
Gm38020 X 103576426 to 103581101 4675 - unclassified gene predicted gene, 38020
Gm27798 X 103595938 to 103596008 70 + unclassified non-coding RNA gene predicted gene, 27798
DXPas31 X 103597150 to 103597316 166 DNA segment DNA segment, Chr X, Pasteur Institute 31
Gm9159 X 103597771 to 103598336 565 + pseudogene predicted gene 9159
Gm27987 X 103605225 to 103605317 92 + unclassified non-coding RNA gene predicted gene, 27987
Tssr163961 X 103605595 to 103605635 40 - TSS region transcription start site region 163961
Gm27285 X 103606323 to 103606449 126 + unclassified non-coding RNA gene predicted gene, 27285
Tssr163962 X 103616783 to 103616818 35 - TSS region transcription start site region 163962
Cpgi22889 X 103616807 to 103617108 301 CpG island CpG island 22889
Cpgi22890 X 103622325 to 103622677 352 CpG island CpG island 22890
Cpgi22891 X 103623544 to 103623865 321 CpG island CpG island 22891
Gm27321 X 103623551 to 103623755 204 + lncRNA gene predicted gene, 27321
Tssr163963 X 103623648 to 103623672 24 - TSS region transcription start site region 163963
Tssr163964 X 103623704 to 103623762 58 - TSS region transcription start site region 163964
Tssr161729 X 103630575 to 103630597 22 + TSS region transcription start site region 161729
Zcchc13 X 103630586 to 103631664 1078 + protein coding gene zinc finger, CCHC domain containing 13
Tssr161730 X 103630600 to 103630614 14 + TSS region transcription start site region 161730
DXNds3 X 103637152 to 103637260 108 DNA segment DNA segment, Chr X, Nuffield Department of Surgery 3
DXMit18 X 103637247 to 103637392 145 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 18
Gm14874 X 103643555 to 103644727 1172 - pseudogene predicted gene 14874
Tssr161731 X 103672563 to 103672565 2 + TSS region transcription start site region 161731
Tssr161732 X 103672663 to 103672690 27 + TSS region transcription start site region 161732
Gm14875 X 103680577 to 103680895 318 + pseudogene predicted gene 14875
Gm3943 X 103684615 to 103685332 717 + pseudogene predicted gene 3943
Cpgi22892 X 103695119 to 103695575 456 CpG island CpG island 22892
Slc16a2 X 103697414 to 103821983 124569 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 2
Tssr5664 X 103706041 to 103706042 1 + TSS region transcription start site region 5664
Tssr163965 X 103706322 to 103706333 11 - TSS region transcription start site region 163965