Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:103388574-103598696

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chic1 X 103356476 to 103396092 39616 + protein coding gene cysteine-rich hydrophobic domain 1
DXPas39 X 103396269 to 103396522 253 DNA segment DNA segment, Chr X, Pasteur Institute 39
DXPas38 X 103403127 to 103403307 180 DNA segment DNA segment, Chr X, Pasteur Institute 38
Tssr161720 X 103414461 to 103414481 20 + TSS region transcription start site region 161720
Tsx X 103414467 to 103424580 10113 + protein coding gene testis specific X-linked gene
Gm26992 X 103422010 to 103481705 59695 + protein coding gene predicted gene, 26992
DXPas42 X 103424261 to 103424465 204 DNA segment DNA segment, Chr X, Pasteur Institute 42
Tssr163936 X 103428351 to 103428399 48 - TSS region transcription start site region 163936
DXPas29 X 103431419 to 103431580 161 DNA segment DNA segment, Chr X, Pasteur Institute 29
Tsix X 103431517 to 103484957 53440 + antisense lncRNA gene X (inactive)-specific transcript, opposite strand
Tssr163937 X 103438237 to 103438242 5 - TSS region transcription start site region 163937
Cpgi22886 X 103447609 to 103448255 646 CpG island CpG island 22886
Tssr161721 X 103447712 to 103447735 23 + TSS region transcription start site region 161721
Tssr161722 X 103447742 to 103447758 16 + TSS region transcription start site region 161722
Tssr161723 X 103447785 to 103447796 11 + TSS region transcription start site region 161723
DXPas36 X 103451410 to 103451618 208 DNA segment DNA segment, Chr X, Pastuer Institute 36
DXPas37 X 103452612 to 103452814 202 DNA segment DNA segment, Chr X, Pasteur Institute 37
Xist X 103460373 to 103483233 22860 - lincRNA gene inactive X specific transcripts
Tssr163938 X 103460403 to 103460429 26 - TSS region transcription start site region 163938
Gm27733 X 103461218 to 103461285 67 - unclassified non-coding RNA gene predicted gene, 27733
Tssr5663 X 103466615 to 103466632 17 - TSS region transcription start site region 5663
Tssr163939 X 103467289 to 103467338 49 - TSS region transcription start site region 163939
Tssr163940 X 103467454 to 103467554 100 - TSS region transcription start site region 163940
Tssr163941 X 103468012 to 103468036 24 - TSS region transcription start site region 163941
Tssr163942 X 103468913 to 103468927 14 - TSS region transcription start site region 163942
Gm27927 X 103469671 to 103469796 125 - unclassified non-coding RNA gene predicted gene, 27927
Tssr163943 X 103469695 to 103469707 12 - TSS region transcription start site region 163943
Tssr163944 X 103469728 to 103469741 13 - TSS region transcription start site region 163944
Tssr163945 X 103472998 to 103473002 4 - TSS region transcription start site region 163945
Tssr163946 X 103475576 to 103475625 49 - TSS region transcription start site region 163946
Tssr163947 X 103475653 to 103475675 22 - TSS region transcription start site region 163947
Tssr163948 X 103478142 to 103478147 5 - TSS region transcription start site region 163948
Tssr163949 X 103480510 to 103480561 51 - TSS region transcription start site region 163949
Tssr163950 X 103480563 to 103480645 82 - TSS region transcription start site region 163950
Tssr163951 X 103480693 to 103480769 76 - TSS region transcription start site region 163951
Tssr163952 X 103480783 to 103480796 13 - TSS region transcription start site region 163952
Tssr163953 X 103480883 to 103480935 52 - TSS region transcription start site region 163953
Gm27520 X 103480946 to 103481026 80 + unclassified non-coding RNA gene predicted gene, 27520
Cpgi22887 X 103482077 to 103482247 170 CpG island CpG island 22887
Tssr163954 X 103482550 to 103482577 27 - TSS region transcription start site region 163954
Tssr161724 X 103482698 to 103482702 4 + TSS region transcription start site region 161724
Tssr163955 X 103482780 to 103482794 14 - TSS region transcription start site region 163955
Tssr163956 X 103482832 to 103482849 17 - TSS region transcription start site region 163956
Tssr163957 X 103483034 to 103483042 8 - TSS region transcription start site region 163957
Tssr163958 X 103483205 to 103483225 20 - TSS region transcription start site region 163958
Tssr163959 X 103483243 to 103483252 9 - TSS region transcription start site region 163959
Gm14861 X 103486934 to 103487388 454 + pseudogene predicted gene 14861
Tssr161725 X 103489431 to 103489442 11 + TSS region transcription start site region 161725
Rps12-ps1 X 103489517 to 103489917 400 + pseudogene ribosomal protein S12, pseudogene 1
Cpgi22888 X 103493343 to 103493904 561 CpG island CpG island 22888
Tssr163960 X 103493396 to 103493421 25 - TSS region transcription start site region 163960
Jpx X 103493558 to 103506425 12867 + lincRNA gene Jpx transcript, Xist activator (non-protein coding)
Tssr161726 X 103493564 to 103493592 28 + TSS region transcription start site region 161726
Gm27875 X 103493574 to 103493696 122 + unclassified non-coding RNA gene predicted gene, 27875
Tssr161727 X 103493615 to 103493625 10 + TSS region transcription start site region 161727
Tssr161728 X 103493769 to 103493782 13 + TSS region transcription start site region 161728
Gm9670 X 103506812 to 103507589 777 + pseudogene predicted gene 9670
Gm14860 X 103514922 to 103515350 428 + pseudogene predicted gene 14860
Gm9785 X 103525319 to 103525847 528 - pseudogene predicted pseudogene 9785
Gm9157 X 103529483 to 103529707 224 + pseudogene predicted gene 9157
Ftx X 103560910 to 103623754 62844 - lincRNA gene Ftx transcript, Xist regulator (non-protein coding)
Mirc23 X 103572921 to 103573154 233 complex/cluster/region microRNA cluster 23, including Mir374b through Mir421
Mir421 X 103572921 to 103572996 75 - miRNA gene microRNA 421
Mir374b X 103573060 to 103573154 94 - miRNA gene microRNA 374b
Mir374c X 103573085 to 103573133 48 + miRNA gene microRNA 374c
Gm38020 X 103576426 to 103581101 4675 - unclassified gene predicted gene, 38020
Gm27798 X 103595938 to 103596008 70 + unclassified non-coding RNA gene predicted gene, 27798
DXPas31 X 103597150 to 103597316 166 DNA segment DNA segment, Chr X, Pasteur Institute 31
Gm9159 X 103597771 to 103598336 565 + pseudogene predicted gene 9159