Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:102921682-103451691

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr5661 X 102928369 to 102928374 5 + TSS region transcription start site region 5661
1700018G05Rik X 102928372 to 102929094 722 + lncRNA gene RIKEN cDNA 1700018G05 gene
Gm5126 X 102932047 to 102934223 2176 - lncRNA gene predicted pseudogene 5126
Cpgi22882 X 102933642 to 102934500 858 CpG island CpG island 22882
Tssr163923 X 102934178 to 102934207 29 - TSS region transcription start site region 163923
Tssr5662 X 102935588 to 102935593 5 - TSS region transcription start site region 5662
Gm14841 X 102979888 to 102980645 757 + pseudogene predicted gene 14841
Gm14837 X 102998040 to 102998245 205 - pseudogene predicted gene 14837
Gm21998 X 103003724 to 103005031 1307 - pseudogene predicted gene 21998
DXMit95a X 103012242 to 103012391 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 95a
Spha3 X 103012242 to 163975945 60963703 QTL sperm head anomaly 3
Pabpc1l2b-ps X 103013698 to 103014387 689 + pseudogene poly(A) binding protein, cytoplasmic 1-like 2B, pseudogene
C030034E14Rik X 103016124 to 103016612 488 unclassified gene RIKEN cDNA C030034E14 gene
DXMit170 X 103019000 to 103019114 114 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 170
Lmr30 X 103019000 to 103019114 114 QTL leishmaniasis resistance 30
Shm4 X 103019114 to 73028444 -29990670 QTL sperm head morphology 4
Gct4 X 103019114 to 77080730 -25938384 QTL granulosa cell tumorigenesis 4
Gm39529 X 103025176 to 103027086 1910 - lncRNA gene predicted gene, 39529
Tssr163924 X 103027259 to 103027267 8 - TSS region transcription start site region 163924
Gm9143 X 103037624 to 103038368 744 + pseudogene predicted gene 9143
Pabpc1l2a-ps X 103066668 to 103067180 512 - pseudogene poly(A) binding protein, cytoplasmic 1-like 2A, pseudogene
DXMit95b X 103068544 to 103068687 143 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 95b
Gm3928 X 103075919 to 103077225 1306 + pseudogene predicted gene 3928
Gm14838 X 103083003 to 103083250 247 + pseudogene predicted gene 14838
Gm6206 X 103163110 to 103165407 2297 - pseudogene predicted pseudogene 6206
Cpgi22883 X 103165241 to 103165632 391 CpG island CpG island 22883
4930519F16Rik X 103182991 to 103256632 73641 - pseudogene RIKEN cDNA 4930519F16 gene
Nap1l2 X 103184176 to 103186640 2464 - protein coding gene nucleosome assembly protein 1-like 2
Tssr163925 X 103185968 to 103185979 11 - TSS region transcription start site region 163925
Tssr163926 X 103186442 to 103186453 11 - TSS region transcription start site region 163926
Tssr163927 X 103186475 to 103186486 11 - TSS region transcription start site region 163927
Tssr163928 X 103186502 to 103186523 21 - TSS region transcription start site region 163928
Tssr163929 X 103186535 to 103186546 11 - TSS region transcription start site region 163929
Tssr163930 X 103186555 to 103186616 61 - TSS region transcription start site region 163930
Tssr163931 X 103186618 to 103186671 53 - TSS region transcription start site region 163931
Tssr163932 X 103186682 to 103186691 9 - TSS region transcription start site region 163932
Gm9050 X 103227705 to 103228152 447 + pseudogene predicted gene 9050
Gm14847 X 103236125 to 103236643 518 + pseudogene predicted gene 14847
Tssr163933 X 103256597 to 103256608 11 - TSS region transcription start site region 163933
Gm19200 X 103287167 to 103288970 1803 - pseudogene predicted gene, 19200
Gm14848 X 103299110 to 103299974 864 + pseudogene predicted gene 14848
DXPas28 X 103307156 to 103307309 153 DNA segment DNA segment, Chr X, Pasteur Institute 28
Tssr163934 X 103311777 to 103311802 25 - TSS region transcription start site region 163934
Tssr163935 X 103311818 to 103311837 19 - TSS region transcription start site region 163935
Gm3931 X 103319111 to 103319565 454 + pseudogene predicted gene 3931
Cdx4 X 103321398 to 103330224 8826 + protein coding gene caudal type homeobox 4
Cpgi22884 X 103321842 to 103322173 331 CpG island CpG island 22884
Gm9516 X 103336830 to 103337253 423 + pseudogene predicted gene 9516
Cpgi22885 X 103356341 to 103356984 643 CpG island CpG island 22885
Tssr161716 X 103356420 to 103356433 13 + TSS region transcription start site region 161716
Tssr161717 X 103356464 to 103356488 24 + TSS region transcription start site region 161717
Chic1 X 103356476 to 103396092 39616 + protein coding gene cysteine-rich hydrophobic domain 1
Tssr161718 X 103356491 to 103356513 22 + TSS region transcription start site region 161718
Tssr161719 X 103356574 to 103356602 28 + TSS region transcription start site region 161719
Gm26952 X 103381957 to 103383169 1212 - antisense lncRNA gene predicted gene, 26952
DXPas41 X 103385427 to 103385591 164 DNA segment DNA segment, Chr X, Pasteur Institute 41
DXPas40 X 103385843 to 103385952 109 DNA segment DNA segment, Chr X, Pasteur Institute 40
DXPas39 X 103396269 to 103396522 253 DNA segment DNA segment, Chr X, Pasteur Institute 39
DXPas38 X 103403127 to 103403307 180 DNA segment DNA segment, Chr X, Pasteur Institute 38
Tssr161720 X 103414461 to 103414481 20 + TSS region transcription start site region 161720
Tsx X 103414467 to 103424580 10113 + protein coding gene testis specific X-linked gene
Gm26992 X 103422010 to 103481705 59695 + protein coding gene predicted gene, 26992
DXPas42 X 103424261 to 103424465 204 DNA segment DNA segment, Chr X, Pasteur Institute 42
Tssr163936 X 103428351 to 103428399 48 - TSS region transcription start site region 163936
DXPas29 X 103431419 to 103431580 161 DNA segment DNA segment, Chr X, Pasteur Institute 29
Tsix X 103431517 to 103484957 53440 + antisense lncRNA gene X (inactive)-specific transcript, opposite strand
Tssr163937 X 103438237 to 103438242 5 - TSS region transcription start site region 163937
Cpgi22886 X 103447609 to 103448255 646 CpG island CpG island 22886
Tssr161721 X 103447712 to 103447735 23 + TSS region transcription start site region 161721
Tssr161722 X 103447742 to 103447758 16 + TSS region transcription start site region 161722
Tssr161723 X 103447785 to 103447796 11 + TSS region transcription start site region 161723
DXPas36 X 103451410 to 103451618 208 DNA segment DNA segment, Chr X, Pastuer Institute 36