Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:102513369-103343374

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phka1 X 102513975 to 102644246 130271 - protein coding gene phosphorylase kinase alpha 1
Tssr163919 X 102515177 to 102515181 4 - TSS region transcription start site region 163919
Cpgi22881 X 102643793 to 102644371 578 CpG island CpG island 22881
Tssr163920 X 102644165 to 102644177 12 - TSS region transcription start site region 163920
Tssr163921 X 102644186 to 102644204 18 - TSS region transcription start site region 163921
Tssr163922 X 102644210 to 102644254 44 - TSS region transcription start site region 163922
DXMit115.1 X 102652406 to 102652545 139 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 115.1
DXMit115 X 102652518 to 102652667 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 115
Gm9109 X 102655659 to 102657063 1404 + pseudogene predicted gene 9109
Gm14840 X 102657741 to 102658334 593 - pseudogene predicted gene 14840
Gm3880 X 102686292 to 102686972 680 - lncRNA gene predicted pseudogene 3880
Gm9112 X 102706890 to 102707635 745 - protein coding gene predicted gene 9112
Tssr5659 X 102707850 to 102707858 8 + TSS region transcription start site region 5659
Dmrtc1b X 102707881 to 102715209 7328 + protein coding gene DMRT-like family C1b
Gm9115 X 102724402 to 102725749 1347 - pseudogene predicted gene 9115
DXMit148 X 102726377 to 102726721 344 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 148
Gm14839 X 102735986 to 102738618 2632 + pseudogene predicted gene 14839
Gm4234 X 102754781 to 102757471 2690 + pseudogene predicted pseudogene 4234
Gm9119 X 102777738 to 102779484 1746 + pseudogene predicted pseudogene 9119
Gm5166 X 102794298 to 102796833 2535 + pseudogene predicted pseudogene 5166
Gm25358 X 102801184 to 102801284 100 + rRNA gene predicted gene, 25358
Dmrtc1c1 X 102802963 to 102809942 6979 + protein coding gene DMRT-like family C1c1
Gm9126 X 102818372 to 102820073 1701 + pseudogene predicted pseudogene 9126
Gm16511 X 102830950 to 102833804 2854 + pseudogene predicted gene 16511
Gm24509 X 102838155 to 102838255 100 + rRNA gene predicted gene, 24509
Dmrtc1c2 X 102847639 to 102854616 6977 - protein coding gene DMRT-like family C1c2
Gm26152 X 102856291 to 102856391 100 - rRNA gene predicted gene, 26152
1700031F05Rik X 102859166 to 102866353 7187 - protein coding gene RIKEN cDNA 1700031F05 gene
Gm9133 X 102880529 to 102882254 1725 - pseudogene predicted pseudogene 9133
Dmrtc1a X 102903216 to 102908687 5471 - protein coding gene DMRT-like family C1a
Tssr5660 X 102908899 to 102908910 11 + TSS region transcription start site region 5660
1700011M02Rik X 102908905 to 102909651 746 + protein coding gene RIKEN cDNA 1700011M02 gene
Tssr5661 X 102928369 to 102928374 5 + TSS region transcription start site region 5661
1700018G05Rik X 102928372 to 102929094 722 + lncRNA gene RIKEN cDNA 1700018G05 gene
Gm5126 X 102932047 to 102934223 2176 - lncRNA gene predicted pseudogene 5126
Cpgi22882 X 102933642 to 102934500 858 CpG island CpG island 22882
Tssr163923 X 102934178 to 102934207 29 - TSS region transcription start site region 163923
Tssr5662 X 102935588 to 102935593 5 - TSS region transcription start site region 5662
Gm14841 X 102979888 to 102980645 757 + pseudogene predicted gene 14841
Gm14837 X 102998040 to 102998245 205 - pseudogene predicted gene 14837
Gm21998 X 103003724 to 103005031 1307 - pseudogene predicted gene 21998
Spha3 X 103012242 to 163975945 60963703 QTL sperm head anomaly 3
DXMit95a X 103012242 to 103012391 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 95a
Pabpc1l2b-ps X 103013698 to 103014387 689 + pseudogene poly(A) binding protein, cytoplasmic 1-like 2B, pseudogene
C030034E14Rik X 103016124 to 103016612 488 unclassified gene RIKEN cDNA C030034E14 gene
DXMit170 X 103019000 to 103019114 114 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 170
Lmr30 X 103019000 to 103019114 114 QTL leishmaniasis resistance 30
Shm4 X 103019114 to 73028444 -29990670 QTL sperm head morphology 4
Gct4 X 103019114 to 77080730 -25938384 QTL granulosa cell tumorigenesis 4
Gm39529 X 103025176 to 103027086 1910 - lncRNA gene predicted gene, 39529
Tssr163924 X 103027259 to 103027267 8 - TSS region transcription start site region 163924
Gm9143 X 103037624 to 103038368 744 + pseudogene predicted gene 9143
Pabpc1l2a-ps X 103066668 to 103067180 512 - pseudogene poly(A) binding protein, cytoplasmic 1-like 2A, pseudogene
DXMit95b X 103068544 to 103068687 143 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 95b
Gm3928 X 103075919 to 103077225 1306 + pseudogene predicted gene 3928
Gm14838 X 103083003 to 103083250 247 + pseudogene predicted gene 14838
Gm6206 X 103163110 to 103165407 2297 - pseudogene predicted pseudogene 6206
Cpgi22883 X 103165241 to 103165632 391 CpG island CpG island 22883
4930519F16Rik X 103182991 to 103256632 73641 - pseudogene RIKEN cDNA 4930519F16 gene
Nap1l2 X 103184176 to 103186640 2464 - protein coding gene nucleosome assembly protein 1-like 2
Tssr163925 X 103185968 to 103185979 11 - TSS region transcription start site region 163925
Tssr163926 X 103186442 to 103186453 11 - TSS region transcription start site region 163926
Tssr163927 X 103186475 to 103186486 11 - TSS region transcription start site region 163927
Tssr163928 X 103186502 to 103186523 21 - TSS region transcription start site region 163928
Tssr163929 X 103186535 to 103186546 11 - TSS region transcription start site region 163929
Tssr163930 X 103186555 to 103186616 61 - TSS region transcription start site region 163930
Tssr163931 X 103186618 to 103186671 53 - TSS region transcription start site region 163931
Tssr163932 X 103186682 to 103186691 9 - TSS region transcription start site region 163932
Gm9050 X 103227705 to 103228152 447 + pseudogene predicted gene 9050
Gm14847 X 103236125 to 103236643 518 + pseudogene predicted gene 14847
Tssr163933 X 103256597 to 103256608 11 - TSS region transcription start site region 163933
Gm19200 X 103287167 to 103288970 1803 - pseudogene predicted gene, 19200
Gm14848 X 103299110 to 103299974 864 + pseudogene predicted gene 14848
DXPas28 X 103307156 to 103307309 153 DNA segment DNA segment, Chr X, Pasteur Institute 28
Tssr163934 X 103311777 to 103311802 25 - TSS region transcription start site region 163934
Tssr163935 X 103311818 to 103311837 19 - TSS region transcription start site region 163935
Gm3931 X 103319111 to 103319565 454 + pseudogene predicted gene 3931
Cdx4 X 103321398 to 103330224 8826 + protein coding gene caudal type homeobox 4
Cpgi22884 X 103321842 to 103322173 331 CpG island CpG island 22884
Gm9516 X 103336830 to 103337253 423 + pseudogene predicted gene 9516