Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:102510373-104433233

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224 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phka1 X 102513975 to 102644246 130271 - protein coding gene phosphorylase kinase alpha 1
Tssr163919 X 102515177 to 102515181 4 - TSS region transcription start site region 163919
Cpgi22881 X 102643793 to 102644371 578 CpG island CpG island 22881
Tssr163920 X 102644165 to 102644177 12 - TSS region transcription start site region 163920
Tssr163921 X 102644186 to 102644204 18 - TSS region transcription start site region 163921
Tssr163922 X 102644210 to 102644254 44 - TSS region transcription start site region 163922
DXMit115.1 X 102652406 to 102652545 139 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 115.1
DXMit115 X 102652518 to 102652667 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 115
Gm9109 X 102655659 to 102657063 1404 + pseudogene predicted gene 9109
Gm14840 X 102657741 to 102658334 593 - pseudogene predicted gene 14840
Gm3880 X 102686292 to 102686972 680 - lncRNA gene predicted pseudogene 3880
Gm9112 X 102706890 to 102707635 745 - protein coding gene predicted gene 9112
Tssr5659 X 102707850 to 102707858 8 + TSS region transcription start site region 5659
Dmrtc1b X 102707881 to 102715209 7328 + protein coding gene DMRT-like family C1b
Gm9115 X 102724402 to 102725749 1347 - pseudogene predicted gene 9115
DXMit148 X 102726377 to 102726721 344 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 148
Gm14839 X 102735986 to 102738618 2632 + pseudogene predicted gene 14839
Gm4234 X 102754781 to 102757471 2690 + pseudogene predicted pseudogene 4234
Gm9119 X 102777738 to 102779484 1746 + pseudogene predicted pseudogene 9119
Gm5166 X 102794298 to 102796833 2535 + pseudogene predicted pseudogene 5166
Gm25358 X 102801184 to 102801284 100 + rRNA gene predicted gene, 25358
Dmrtc1c1 X 102802963 to 102809942 6979 + protein coding gene DMRT-like family C1c1
Gm9126 X 102818372 to 102820073 1701 + pseudogene predicted pseudogene 9126
Gm16511 X 102830950 to 102833804 2854 + pseudogene predicted gene 16511
Gm24509 X 102838155 to 102838255 100 + rRNA gene predicted gene, 24509
Dmrtc1c2 X 102847639 to 102854616 6977 - protein coding gene DMRT-like family C1c2
Gm26152 X 102856291 to 102856391 100 - rRNA gene predicted gene, 26152
1700031F05Rik X 102859166 to 102866353 7187 - protein coding gene RIKEN cDNA 1700031F05 gene
Gm9133 X 102880529 to 102882254 1725 - pseudogene predicted pseudogene 9133
Dmrtc1a X 102903216 to 102908687 5471 - protein coding gene DMRT-like family C1a
Tssr5660 X 102908899 to 102908910 11 + TSS region transcription start site region 5660
1700011M02Rik X 102908905 to 102909651 746 + protein coding gene RIKEN cDNA 1700011M02 gene
Tssr5661 X 102928369 to 102928374 5 + TSS region transcription start site region 5661
1700018G05Rik X 102928372 to 102929094 722 + lncRNA gene RIKEN cDNA 1700018G05 gene
Gm5126 X 102932047 to 102934223 2176 - lncRNA gene predicted pseudogene 5126
Cpgi22882 X 102933642 to 102934500 858 CpG island CpG island 22882
Tssr163923 X 102934178 to 102934207 29 - TSS region transcription start site region 163923
Tssr5662 X 102935588 to 102935593 5 - TSS region transcription start site region 5662
Gm14841 X 102979888 to 102980645 757 + pseudogene predicted gene 14841
Gm14837 X 102998040 to 102998245 205 - pseudogene predicted gene 14837
Gm21998 X 103003724 to 103005031 1307 - pseudogene predicted gene 21998
DXMit95a X 103012242 to 103012391 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 95a
Spha3 X 103012242 to 163975945 60963703 QTL sperm head anomaly 3
Pabpc1l2b-ps X 103013698 to 103014387 689 + pseudogene poly(A) binding protein, cytoplasmic 1-like 2B, pseudogene
C030034E14Rik X 103016124 to 103016612 488 unclassified gene RIKEN cDNA C030034E14 gene
DXMit170 X 103019000 to 103019114 114 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 170
Lmr30 X 103019000 to 103019114 114 QTL leishmaniasis resistance 30
Shm4 X 103019114 to 73028444 -29990670 QTL sperm head morphology 4
Gct4 X 103019114 to 77080730 -25938384 QTL granulosa cell tumorigenesis 4
Gm39529 X 103025176 to 103027086 1910 - lncRNA gene predicted gene, 39529
Tssr163924 X 103027259 to 103027267 8 - TSS region transcription start site region 163924
Gm9143 X 103037624 to 103038368 744 + pseudogene predicted gene 9143
Pabpc1l2a-ps X 103066668 to 103067180 512 - pseudogene poly(A) binding protein, cytoplasmic 1-like 2A, pseudogene
DXMit95b X 103068544 to 103068687 143 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 95b
Gm3928 X 103075919 to 103077225 1306 + pseudogene predicted gene 3928
Gm14838 X 103083003 to 103083250 247 + pseudogene predicted gene 14838
Gm6206 X 103163110 to 103165407 2297 - pseudogene predicted pseudogene 6206
Cpgi22883 X 103165241 to 103165632 391 CpG island CpG island 22883
4930519F16Rik X 103182991 to 103256632 73641 - pseudogene RIKEN cDNA 4930519F16 gene
Nap1l2 X 103184176 to 103186640 2464 - protein coding gene nucleosome assembly protein 1-like 2
Tssr163925 X 103185968 to 103185979 11 - TSS region transcription start site region 163925
Tssr163926 X 103186442 to 103186453 11 - TSS region transcription start site region 163926
Tssr163927 X 103186475 to 103186486 11 - TSS region transcription start site region 163927
Tssr163928 X 103186502 to 103186523 21 - TSS region transcription start site region 163928
Tssr163929 X 103186535 to 103186546 11 - TSS region transcription start site region 163929
Tssr163930 X 103186555 to 103186616 61 - TSS region transcription start site region 163930
Tssr163931 X 103186618 to 103186671 53 - TSS region transcription start site region 163931
Tssr163932 X 103186682 to 103186691 9 - TSS region transcription start site region 163932
Gm9050 X 103227705 to 103228152 447 + pseudogene predicted gene 9050
Gm14847 X 103236125 to 103236643 518 + pseudogene predicted gene 14847
Tssr163933 X 103256597 to 103256608 11 - TSS region transcription start site region 163933
Gm19200 X 103287167 to 103288970 1803 - pseudogene predicted gene, 19200
Gm14848 X 103299110 to 103299974 864 + pseudogene predicted gene 14848
DXPas28 X 103307156 to 103307309 153 DNA segment DNA segment, Chr X, Pasteur Institute 28
Tssr163934 X 103311777 to 103311802 25 - TSS region transcription start site region 163934
Tssr163935 X 103311818 to 103311837 19 - TSS region transcription start site region 163935
Gm3931 X 103319111 to 103319565 454 + pseudogene predicted gene 3931
Cdx4 X 103321398 to 103330224 8826 + protein coding gene caudal type homeobox 4
Cpgi22884 X 103321842 to 103322173 331 CpG island CpG island 22884
Gm9516 X 103336830 to 103337253 423 + pseudogene predicted gene 9516
Cpgi22885 X 103356341 to 103356984 643 CpG island CpG island 22885
Tssr161716 X 103356420 to 103356433 13 + TSS region transcription start site region 161716
Tssr161717 X 103356464 to 103356488 24 + TSS region transcription start site region 161717
Chic1 X 103356476 to 103396092 39616 + protein coding gene cysteine-rich hydrophobic domain 1
Tssr161718 X 103356491 to 103356513 22 + TSS region transcription start site region 161718
Tssr161719 X 103356574 to 103356602 28 + TSS region transcription start site region 161719
Gm26952 X 103381957 to 103383169 1212 - antisense lncRNA gene predicted gene, 26952
DXPas41 X 103385427 to 103385591 164 DNA segment DNA segment, Chr X, Pasteur Institute 41
DXPas40 X 103385843 to 103385952 109 DNA segment DNA segment, Chr X, Pasteur Institute 40
DXPas39 X 103396269 to 103396522 253 DNA segment DNA segment, Chr X, Pasteur Institute 39
DXPas38 X 103403127 to 103403307 180 DNA segment DNA segment, Chr X, Pasteur Institute 38
Tssr161720 X 103414461 to 103414481 20 + TSS region transcription start site region 161720
Tsx X 103414467 to 103424580 10113 + protein coding gene testis specific X-linked gene
Gm26992 X 103422010 to 103481705 59695 + protein coding gene predicted gene, 26992
DXPas42 X 103424261 to 103424465 204 DNA segment DNA segment, Chr X, Pasteur Institute 42
Tssr163936 X 103428351 to 103428399 48 - TSS region transcription start site region 163936
DXPas29 X 103431419 to 103431580 161 DNA segment DNA segment, Chr X, Pasteur Institute 29
Tsix X 103431517 to 103484957 53440 + antisense lncRNA gene X (inactive)-specific transcript, opposite strand
Tssr163937 X 103438237 to 103438242 5 - TSS region transcription start site region 163937
Cpgi22886 X 103447609 to 103448255 646 CpG island CpG island 22886
Tssr161721 X 103447712 to 103447735 23 + TSS region transcription start site region 161721
Tssr161722 X 103447742 to 103447758 16 + TSS region transcription start site region 161722
Tssr161723 X 103447785 to 103447796 11 + TSS region transcription start site region 161723
DXPas36 X 103451410 to 103451618 208 DNA segment DNA segment, Chr X, Pastuer Institute 36
DXPas37 X 103452612 to 103452814 202 DNA segment DNA segment, Chr X, Pasteur Institute 37
Xist X 103460373 to 103483233 22860 - lincRNA gene inactive X specific transcripts
Tssr163938 X 103460403 to 103460429 26 - TSS region transcription start site region 163938
Gm27733 X 103461218 to 103461285 67 - unclassified non-coding RNA gene predicted gene, 27733
Tssr5663 X 103466615 to 103466632 17 - TSS region transcription start site region 5663
Tssr163939 X 103467289 to 103467338 49 - TSS region transcription start site region 163939
Tssr163940 X 103467454 to 103467554 100 - TSS region transcription start site region 163940
Tssr163941 X 103468012 to 103468036 24 - TSS region transcription start site region 163941
Tssr163942 X 103468913 to 103468927 14 - TSS region transcription start site region 163942
Gm27927 X 103469671 to 103469796 125 - unclassified non-coding RNA gene predicted gene, 27927
Tssr163943 X 103469695 to 103469707 12 - TSS region transcription start site region 163943
Tssr163944 X 103469728 to 103469741 13 - TSS region transcription start site region 163944
Tssr163945 X 103472998 to 103473002 4 - TSS region transcription start site region 163945
Tssr163946 X 103475576 to 103475625 49 - TSS region transcription start site region 163946
Tssr163947 X 103475653 to 103475675 22 - TSS region transcription start site region 163947
Tssr163948 X 103478142 to 103478147 5 - TSS region transcription start site region 163948
Tssr163949 X 103480510 to 103480561 51 - TSS region transcription start site region 163949
Tssr163950 X 103480563 to 103480645 82 - TSS region transcription start site region 163950
Tssr163951 X 103480693 to 103480769 76 - TSS region transcription start site region 163951
Tssr163952 X 103480783 to 103480796 13 - TSS region transcription start site region 163952
Tssr163953 X 103480883 to 103480935 52 - TSS region transcription start site region 163953
Gm27520 X 103480946 to 103481026 80 + unclassified non-coding RNA gene predicted gene, 27520
Cpgi22887 X 103482077 to 103482247 170 CpG island CpG island 22887
Tssr163954 X 103482550 to 103482577 27 - TSS region transcription start site region 163954
Tssr161724 X 103482698 to 103482702 4 + TSS region transcription start site region 161724
Tssr163955 X 103482780 to 103482794 14 - TSS region transcription start site region 163955
Tssr163956 X 103482832 to 103482849 17 - TSS region transcription start site region 163956
Tssr163957 X 103483034 to 103483042 8 - TSS region transcription start site region 163957
Tssr163958 X 103483205 to 103483225 20 - TSS region transcription start site region 163958
Tssr163959 X 103483243 to 103483252 9 - TSS region transcription start site region 163959
Gm14861 X 103486934 to 103487388 454 + pseudogene predicted gene 14861
Tssr161725 X 103489431 to 103489442 11 + TSS region transcription start site region 161725
Rps12-ps1 X 103489517 to 103489917 400 + pseudogene ribosomal protein S12, pseudogene 1
Cpgi22888 X 103493343 to 103493904 561 CpG island CpG island 22888
Tssr163960 X 103493396 to 103493421 25 - TSS region transcription start site region 163960
Jpx X 103493558 to 103506425 12867 + lincRNA gene Jpx transcript, Xist activator (non-protein coding)
Tssr161726 X 103493564 to 103493592 28 + TSS region transcription start site region 161726
Gm27875 X 103493574 to 103493696 122 + unclassified non-coding RNA gene predicted gene, 27875
Tssr161727 X 103493615 to 103493625 10 + TSS region transcription start site region 161727
Tssr161728 X 103493769 to 103493782 13 + TSS region transcription start site region 161728
Gm9670 X 103506812 to 103507589 777 + pseudogene predicted gene 9670
Gm14860 X 103514922 to 103515350 428 + pseudogene predicted gene 14860
Gm9785 X 103525319 to 103525847 528 - pseudogene predicted pseudogene 9785
Gm9157 X 103529483 to 103529707 224 + pseudogene predicted gene 9157
Ftx X 103560910 to 103623754 62844 - lincRNA gene Ftx transcript, Xist regulator (non-protein coding)
Mir421 X 103572921 to 103572996 75 - miRNA gene microRNA 421
Mirc23 X 103572921 to 103573154 233 complex/cluster/region microRNA cluster 23, including Mir374b through Mir421
Mir374b X 103573060 to 103573154 94 - miRNA gene microRNA 374b
Mir374c X 103573085 to 103573133 48 + miRNA gene microRNA 374c
Gm38020 X 103576426 to 103581101 4675 - unclassified gene predicted gene, 38020
Gm27798 X 103595938 to 103596008 70 + unclassified non-coding RNA gene predicted gene, 27798
DXPas31 X 103597150 to 103597316 166 DNA segment DNA segment, Chr X, Pasteur Institute 31
Gm9159 X 103597771 to 103598336 565 + pseudogene predicted gene 9159
Gm27987 X 103605225 to 103605317 92 + unclassified non-coding RNA gene predicted gene, 27987
Tssr163961 X 103605595 to 103605635 40 - TSS region transcription start site region 163961
Gm27285 X 103606323 to 103606449 126 + unclassified non-coding RNA gene predicted gene, 27285
Tssr163962 X 103616783 to 103616818 35 - TSS region transcription start site region 163962
Cpgi22889 X 103616807 to 103617108 301 CpG island CpG island 22889
Cpgi22890 X 103622325 to 103622677 352 CpG island CpG island 22890
Cpgi22891 X 103623544 to 103623865 321 CpG island CpG island 22891
Gm27321 X 103623551 to 103623755 204 + lncRNA gene predicted gene, 27321
Tssr163963 X 103623648 to 103623672 24 - TSS region transcription start site region 163963
Tssr163964 X 103623704 to 103623762 58 - TSS region transcription start site region 163964
Tssr161729 X 103630575 to 103630597 22 + TSS region transcription start site region 161729
Zcchc13 X 103630586 to 103631664 1078 + protein coding gene zinc finger, CCHC domain containing 13
Tssr161730 X 103630600 to 103630614 14 + TSS region transcription start site region 161730
DXNds3 X 103637152 to 103637260 108 DNA segment DNA segment, Chr X, Nuffield Department of Surgery 3
DXMit18 X 103637247 to 103637392 145 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 18
Gm14874 X 103643555 to 103644727 1172 - pseudogene predicted gene 14874
Tssr161731 X 103672563 to 103672565 2 + TSS region transcription start site region 161731
Tssr161732 X 103672663 to 103672690 27 + TSS region transcription start site region 161732
Gm14875 X 103680577 to 103680895 318 + pseudogene predicted gene 14875
Gm3943 X 103684615 to 103685332 717 + pseudogene predicted gene 3943
Cpgi22892 X 103695119 to 103695575 456 CpG island CpG island 22892
Slc16a2 X 103697414 to 103821983 124569 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 2
Tssr5664 X 103706041 to 103706042 1 + TSS region transcription start site region 5664
Tssr163965 X 103706322 to 103706333 11 - TSS region transcription start site region 163965
Gm6222 X 103762917 to 103763545 628 - pseudogene predicted pseudogene 6222
Tssr163966 X 103763547 to 103763553 6 - TSS region transcription start site region 163966
Gm37956 X 103771646 to 103773655 2009 - unclassified gene predicted gene, 37956
Gm14893 X 103778693 to 103779000 307 + pseudogene predicted gene 14893
Cpgi22893 X 103821243 to 103822002 759 CpG island CpG island 22893
Tssr163967 X 103821859 to 103821921 62 - TSS region transcription start site region 163967
Tssr163968 X 103821940 to 103821992 52 - TSS region transcription start site region 163968
DXMit171 X 103843187 to 103843352 165 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 171
Gm9164 X 103887599 to 103888612 1013 - pseudogene predicted gene 9164
Tssr163969 X 103888683 to 103888685 2 - TSS region transcription start site region 163969
Gm9166 X 103926431 to 103926984 553 - pseudogene predicted gene 9166
Rlim X 103957163 to 103981284 24121 - protein coding gene ring finger protein, LIM domain interacting
Tssr163970 X 103958258 to 103958304 46 - TSS region transcription start site region 163970
Tssr163971 X 103960860 to 103960864 4 - TSS region transcription start site region 163971
Tssr163972 X 103980150 to 103980199 49 - TSS region transcription start site region 163972
Cpgi22894 X 103980653 to 103981402 749 CpG island CpG island 22894
Tssr163973 X 103981134 to 103981148 14 - TSS region transcription start site region 163973
Tssr163974 X 103981168 to 103981181 13 - TSS region transcription start site region 163974
Tssr163975 X 103981229 to 103981238 9 - TSS region transcription start site region 163975