Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:101744639-103045359

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125 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr161702 X 101747606 to 101747607 1 + TSS region transcription start site region 161702
Tpt1-ps6 X 101768535 to 101769057 522 + pseudogene tumor protein, translationally-controlled, pseudogene 6
Gm9095 X 101787766 to 101788642 876 + pseudogene predicted gene 9095
Gm4779 X 101790332 to 101794456 4124 - protein coding gene predicted gene 4779
Cpgi22874 X 101794069 to 101794772 703 CpG island CpG island 22874
Tssr163895 X 101794375 to 101794387 12 - TSS region transcription start site region 163895
Tssr163896 X 101794399 to 101794417 18 - TSS region transcription start site region 163896
Tssr163897 X 101794429 to 101794448 19 - TSS region transcription start site region 163897
Tssr161703 X 101794627 to 101794642 15 + TSS region transcription start site region 161703
Tssr161704 X 101794644 to 101794680 36 + TSS region transcription start site region 161704
8030474K03Rik X 101794656 to 101798642 3986 + protein coding gene RIKEN cDNA 8030474K03 gene
Gm9097 X 101800414 to 101801290 876 - pseudogene predicted gene 9097
Gm3858 X 101818196 to 101821816 3620 - unclassified gene predicted gene 3858
H3f3a-ps1 X 101824515 to 101824924 409 + pseudogene H3 histone, family 3A, pseudogene 1
Tssr5655 X 101847446 to 101847449 3 - TSS region transcription start site region 5655
Cpgi22875 X 101849327 to 101850406 1079 CpG island CpG island 22875
Tssr161705 X 101849343 to 101849367 24 + TSS region transcription start site region 161705
Tssr161706 X 101849375 to 101849393 18 + TSS region transcription start site region 161706
Nhsl2 X 101849385 to 102092055 242670 + protein coding gene NHS-like 2
Gm25828 X 101912630 to 101912724 94 - snRNA gene predicted gene, 25828
Cpgi22876 X 101954181 to 101954517 336 CpG island CpG island 22876
Tssr161707 X 101961691 to 101961733 42 + TSS region transcription start site region 161707
Tssr161708 X 102004868 to 102004879 11 + TSS region transcription start site region 161708
Tssr5656 X 102005054 to 102005075 21 + TSS region transcription start site region 5656
Gm27843 X 102013049 to 102013152 103 - miRNA gene predicted gene, 27843
Tssr161709 X 102017402 to 102017467 65 + TSS region transcription start site region 161709
Tssr161710 X 102037249 to 102037260 11 + TSS region transcription start site region 161710
Tssr5657 X 102037268 to 102037277 9 + TSS region transcription start site region 5657
Tssr161711 X 102037281 to 102037305 24 + TSS region transcription start site region 161711
Tssr163898 X 102042521 to 102042571 50 - TSS region transcription start site region 163898
Tssr163899 X 102050723 to 102050729 6 - TSS region transcription start site region 163899
Tssr161712 X 102050807 to 102050821 14 + TSS region transcription start site region 161712
Tssr161713 X 102050837 to 102050853 16 + TSS region transcription start site region 161713
Rtl5 X 102066544 to 102071304 4760 - protein coding gene retrotransposon Gag like 5
Cpgi22877 X 102070898 to 102071519 621 CpG island CpG island 22877
Tssr163900 X 102071188 to 102071204 16 - TSS region transcription start site region 163900
Tssr163901 X 102071226 to 102071239 13 - TSS region transcription start site region 163901
Tssr163902 X 102071300 to 102071322 22 - TSS region transcription start site region 163902
Tssr163903 X 102071325 to 102071341 16 - TSS region transcription start site region 163903
Gm5125 X 102106603 to 102107226 623 - pseudogene predicted gene 5125
Tssr161714 X 102118473 to 102118504 31 + TSS region transcription start site region 161714
Tssr161715 X 102119457 to 102119490 33 + TSS region transcription start site region 161715
Pin4 X 102119465 to 102127673 8208 + protein coding gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
Gm16471 X 102138638 to 102139230 592 + pseudogene predicted gene 16471
Ercc6l X 102142820 to 102157091 14271 - protein coding gene excision repair cross-complementing rodent repair deficiency complementation group 6 like
Tssr163904 X 102156981 to 102157062 81 - TSS region transcription start site region 163904
Tssr163905 X 102157065 to 102157096 31 - TSS region transcription start site region 163905
Gm9103 X 102178194 to 102178657 463 - pseudogene predicted gene 9103
Cpgi22878 X 102178532 to 102178736 204 CpG island CpG island 22878
Rps4x X 102184941 to 102189391 4450 - protein coding gene ribosomal protein S4, X-linked
Cpgi22879 X 102189108 to 102189290 182 CpG island CpG island 22879
Tssr163906 X 102189299 to 102189308 9 - TSS region transcription start site region 163906
Tssr163907 X 102189310 to 102189338 28 - TSS region transcription start site region 163907
Tssr163908 X 102189339 to 102189364 25 - TSS region transcription start site region 163908
Tssr163909 X 102189371 to 102189388 17 - TSS region transcription start site region 163909
Tssr5658 X 102189403 to 102189408 5 - TSS region transcription start site region 5658
Gm14859 X 102208402 to 102208758 356 + pseudogene predicted gene 14859
Cited1 X 102247381 to 102252181 4800 - protein coding gene Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
Cpgi22880 X 102250240 to 102252387 2147 CpG island CpG island 22880
Tssr163910 X 102250778 to 102250797 19 - TSS region transcription start site region 163910
Tssr163911 X 102250940 to 102250959 19 - TSS region transcription start site region 163911
Tssr163912 X 102251858 to 102251868 10 - TSS region transcription start site region 163912
Tssr163913 X 102252064 to 102252087 23 - TSS region transcription start site region 163913
Tssr163914 X 102252154 to 102252172 18 - TSS region transcription start site region 163914
Tssr163915 X 102252188 to 102252197 9 - TSS region transcription start site region 163915
Gm14858 X 102252651 to 102257689 5038 + lncRNA gene predicted gene 14858
Gm26318 X 102255430 to 102255525 95 - miRNA gene predicted gene, 26318
Hdac8 X 102284639 to 102505359 220720 - protein coding gene histone deacetylase 8
Gm32262 X 102302336 to 102504960 202624 + lncRNA gene predicted gene, 32262
4732468M13Rik X 102315276 to 102319212 3936 unclassified gene RIKEN cDNA 4732468M13 gene
Tssr163916 X 102505100 to 102505129 29 - TSS region transcription start site region 163916
Tssr163917 X 102505138 to 102505171 33 - TSS region transcription start site region 163917
Tssr163918 X 102505393 to 102505412 19 - TSS region transcription start site region 163918
Phka1 X 102513975 to 102644246 130271 - protein coding gene phosphorylase kinase alpha 1
Tssr163919 X 102515177 to 102515181 4 - TSS region transcription start site region 163919
Cpgi22881 X 102643793 to 102644371 578 CpG island CpG island 22881
Tssr163920 X 102644165 to 102644177 12 - TSS region transcription start site region 163920
Tssr163921 X 102644186 to 102644204 18 - TSS region transcription start site region 163921
Tssr163922 X 102644210 to 102644254 44 - TSS region transcription start site region 163922
DXMit115.1 X 102652406 to 102652545 139 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 115.1
DXMit115 X 102652518 to 102652667 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 115
Gm9109 X 102655659 to 102657063 1404 + pseudogene predicted gene 9109
Gm14840 X 102657741 to 102658334 593 - pseudogene predicted gene 14840
Gm3880 X 102686292 to 102686972 680 - lncRNA gene predicted pseudogene 3880
Gm9112 X 102706890 to 102707635 745 - protein coding gene predicted gene 9112
Tssr5659 X 102707850 to 102707858 8 + TSS region transcription start site region 5659
Dmrtc1b X 102707881 to 102715209 7328 + protein coding gene DMRT-like family C1b
Gm9115 X 102724402 to 102725749 1347 - pseudogene predicted gene 9115
DXMit148 X 102726377 to 102726721 344 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 148
Gm14839 X 102735986 to 102738618 2632 + pseudogene predicted gene 14839
Gm4234 X 102754781 to 102757471 2690 + pseudogene predicted pseudogene 4234
Gm9119 X 102777738 to 102779484 1746 + pseudogene predicted pseudogene 9119
Gm5166 X 102794298 to 102796833 2535 + pseudogene predicted pseudogene 5166
Gm25358 X 102801184 to 102801284 100 + rRNA gene predicted gene, 25358
Dmrtc1c1 X 102802963 to 102809942 6979 + protein coding gene DMRT-like family C1c1
Gm9126 X 102818372 to 102820073 1701 + pseudogene predicted pseudogene 9126
Gm16511 X 102830950 to 102833804 2854 + pseudogene predicted gene 16511
Gm24509 X 102838155 to 102838255 100 + rRNA gene predicted gene, 24509
Dmrtc1c2 X 102847639 to 102854616 6977 - protein coding gene DMRT-like family C1c2
Gm26152 X 102856291 to 102856391 100 - rRNA gene predicted gene, 26152
1700031F05Rik X 102859166 to 102866353 7187 - protein coding gene RIKEN cDNA 1700031F05 gene
Gm9133 X 102880529 to 102882254 1725 - pseudogene predicted pseudogene 9133
Dmrtc1a X 102903216 to 102908687 5471 - protein coding gene DMRT-like family C1a
Tssr5660 X 102908899 to 102908910 11 + TSS region transcription start site region 5660
1700011M02Rik X 102908905 to 102909651 746 + protein coding gene RIKEN cDNA 1700011M02 gene
Tssr5661 X 102928369 to 102928374 5 + TSS region transcription start site region 5661
1700018G05Rik X 102928372 to 102929094 722 + lncRNA gene RIKEN cDNA 1700018G05 gene
Gm5126 X 102932047 to 102934223 2176 - lncRNA gene predicted pseudogene 5126
Cpgi22882 X 102933642 to 102934500 858 CpG island CpG island 22882
Tssr163923 X 102934178 to 102934207 29 - TSS region transcription start site region 163923
Tssr5662 X 102935588 to 102935593 5 - TSS region transcription start site region 5662
Gm14841 X 102979888 to 102980645 757 + pseudogene predicted gene 14841
Gm14837 X 102998040 to 102998245 205 - pseudogene predicted gene 14837
Gm21998 X 103003724 to 103005031 1307 - pseudogene predicted gene 21998
Spha3 X 103012242 to 163975945 60963703 QTL sperm head anomaly 3
DXMit95a X 103012242 to 103012391 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 95a
Pabpc1l2b-ps X 103013698 to 103014387 689 + pseudogene poly(A) binding protein, cytoplasmic 1-like 2B, pseudogene
C030034E14Rik X 103016124 to 103016612 488 unclassified gene RIKEN cDNA C030034E14 gene
Lmr30 X 103019000 to 103019114 114 QTL leishmaniasis resistance 30
DXMit170 X 103019000 to 103019114 114 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 170
Shm4 X 103019114 to 73028444 -29990670 QTL sperm head morphology 4
Gct4 X 103019114 to 77080730 -25938384 QTL granulosa cell tumorigenesis 4
Gm39529 X 103025176 to 103027086 1910 - lncRNA gene predicted gene, 39529
Tssr163924 X 103027259 to 103027267 8 - TSS region transcription start site region 163924
Gm9143 X 103037624 to 103038368 744 + pseudogene predicted gene 9143