Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:101316840-102078450

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128 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm21986 X 101295839 to 101321348 25509 + unclassified non-coding RNA gene predicted gene 21986
Nlgn3 X 101299179 to 101321350 22171 + protein coding gene neuroligin 3
Tssr161650 X 101320041 to 101320060 19 + TSS region transcription start site region 161650
Tssr161651 X 101320169 to 101320184 15 + TSS region transcription start site region 161651
Tssr161652 X 101320914 to 101320930 16 + TSS region transcription start site region 161652
Tssr161653 X 101321241 to 101321246 5 + TSS region transcription start site region 161653
Cpgi22866 X 101332458 to 101333091 633 CpG island CpG island 22866
Tssr163883 X 101332503 to 101332549 46 - TSS region transcription start site region 163883
Gm31385 X 101338088 to 101341552 3464 + lncRNA gene predicted gene, 31385
Tssr161654 X 101376359 to 101376373 14 + TSS region transcription start site region 161654
Gjb1 X 101376378 to 101385629 9251 + protein coding gene gap junction protein, beta 1
Tssr161655 X 101377267 to 101377281 14 + TSS region transcription start site region 161655
Tssr161656 X 101377290 to 101377317 27 + TSS region transcription start site region 161656
Tssr161657 X 101377323 to 101377334 11 + TSS region transcription start site region 161657
Tssr161658 X 101383726 to 101383741 15 + TSS region transcription start site region 161658
Tssr161659 X 101383765 to 101383777 12 + TSS region transcription start site region 161659
Tssr161660 X 101383781 to 101383802 21 + TSS region transcription start site region 161660
Tssr161661 X 101384296 to 101384311 15 + TSS region transcription start site region 161661
Tssr161662 X 101384443 to 101384454 11 + TSS region transcription start site region 161662
Tssr161663 X 101384490 to 101384508 18 + TSS region transcription start site region 161663
Tssr161664 X 101384630 to 101384643 13 + TSS region transcription start site region 161664
Tssr163884 X 101384644 to 101384681 37 - TSS region transcription start site region 163884
Cpgi22867 X 101384665 to 101385045 380 CpG island CpG island 22867
Tssr161665 X 101384860 to 101384873 13 + TSS region transcription start site region 161665
Tssr161666 X 101396509 to 101396512 3 + TSS region transcription start site region 161666
Zmym3 X 101404384 to 101420849 16465 - protein coding gene zinc finger, MYM-type 3
Cpgi22868 X 101419142 to 101419433 291 CpG island CpG island 22868
Cpgi22869 X 101419709 to 101420287 578 CpG island CpG island 22869
Tssr163885 X 101419776 to 101419787 11 - TSS region transcription start site region 163885
Tssr163886 X 101419788 to 101419859 71 - TSS region transcription start site region 163886
Tssr163887 X 101420206 to 101420225 19 - TSS region transcription start site region 163887
Tssr163888 X 101420348 to 101420364 16 - TSS region transcription start site region 163888
Tssr163889 X 101421140 to 101421158 18 - TSS region transcription start site region 163889
Cpgi22870 X 101429372 to 101429970 598 CpG island CpG island 22870
Nono X 101429651 to 101448593 18942 + protein coding gene non-POU-domain-containing, octamer binding protein
Tssr161667 X 101429654 to 101429708 54 + TSS region transcription start site region 161667
Tssr161668 X 101447888 to 101447906 18 + TSS region transcription start site region 161668
Tssr161669 X 101447916 to 101447938 22 + TSS region transcription start site region 161669
Tssr161670 X 101447991 to 101448001 10 + TSS region transcription start site region 161670
Tssr161671 X 101449061 to 101449068 7 + TSS region transcription start site region 161671
Tssr161672 X 101449078 to 101449089 11 + TSS region transcription start site region 161672
Tssr161673 X 101449103 to 101449135 32 + TSS region transcription start site region 161673
Itgb1bp2 X 101449109 to 101453541 4432 + protein coding gene integrin beta 1 binding protein 2
Tssr161674 X 101449164 to 101449170 6 + TSS region transcription start site region 161674
DXMit230 X 101454619 to 101454742 123 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 230
Tssr161675 X 101479289 to 101479300 11 + TSS region transcription start site region 161675
Gm14843 X 101479348 to 101479559 211 + pseudogene predicted gene 14843
Gm6184 X 101518985 to 101520242 1257 + pseudogene predicted gene 6184
Tssr161676 X 101522273 to 101522304 31 + TSS region transcription start site region 161676
Tssr161677 X 101527583 to 101527620 37 + TSS region transcription start site region 161677
Cpgi22871 X 101532479 to 101533113 634 CpG island CpG island 22871
Taf1 X 101532734 to 101601789 69055 + protein coding gene TATA-box binding protein associated factor 1
Tssr161678 X 101532735 to 101532777 42 + TSS region transcription start site region 161678
Tssr161679 X 101532792 to 101532875 83 + TSS region transcription start site region 161679
Tssr161680 X 101533519 to 101533536 17 + TSS region transcription start site region 161680
Tssr163890 X 101639771 to 101639775 4 - TSS region transcription start site region 163890
Tssr161681 X 101640056 to 101640108 52 + TSS region transcription start site region 161681
Ogt X 101640060 to 101684351 44291 + protein coding gene O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
Cpgi22872 X 101640889 to 101641043 154 CpG island CpG island 22872
Tssr161682 X 101641058 to 101641069 11 + TSS region transcription start site region 161682
8430425A16Rik X 101644522 to 101645345 823 unclassified gene RIKEN cDNA 8430425A16 gene
Tssr161683 X 101649386 to 101649401 15 + TSS region transcription start site region 161683
Tssr161684 X 101652358 to 101652375 17 + TSS region transcription start site region 161684
Tssr161685 X 101652386 to 101652411 25 + TSS region transcription start site region 161685
Tssr161686 X 101652475 to 101652487 12 + TSS region transcription start site region 161686
Tssr161687 X 101652502 to 101652515 13 + TSS region transcription start site region 161687
Tssr161688 X 101652530 to 101652562 32 + TSS region transcription start site region 161688
Tssr161689 X 101652606 to 101652645 39 + TSS region transcription start site region 161689
Tssr161690 X 101652704 to 101652731 27 + TSS region transcription start site region 161690
Tssr161691 X 101653224 to 101653237 13 + TSS region transcription start site region 161691
Tssr161692 X 101653469 to 101653558 89 + TSS region transcription start site region 161692
Tssr161693 X 101653618 to 101653624 6 + TSS region transcription start site region 161693
Tssr161694 X 101655550 to 101655560 10 + TSS region transcription start site region 161694
Tssr161695 X 101667344 to 101667362 18 + TSS region transcription start site region 161695
Tssr161696 X 101673039 to 101673072 33 + TSS region transcription start site region 161696
Tssr161697 X 101680061 to 101680077 16 + TSS region transcription start site region 161697
DXMit168 X 101681261 to 101681381 120 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 168
Tssr161698 X 101682936 to 101682948 12 + TSS region transcription start site region 161698
Tssr161699 X 101683140 to 101683159 19 + TSS region transcription start site region 161699
Gm14845 X 101691545 to 101691850 305 - pseudogene predicted gene 14845
Tssr161700 X 101695833 to 101695841 8 + TSS region transcription start site region 161700
Cpgi22873 X 101696840 to 101698450 1610 CpG island CpG island 22873
Tssr161701 X 101706008 to 101706011 3 + TSS region transcription start site region 161701
Gm9089 X 101709036 to 101709561 525 - pseudogene predicted gene 9089
Cxcr3 X 101731535 to 101734147 2612 - protein coding gene chemokine (C-X-C motif) receptor 3
Tssr163891 X 101734110 to 101734123 13 - TSS region transcription start site region 163891
Tssr163892 X 101734125 to 101734142 17 - TSS region transcription start site region 163892
Tssr163893 X 101734157 to 101734168 11 - TSS region transcription start site region 163893
Tssr163894 X 101734200 to 101734211 11 - TSS region transcription start site region 163894
Tssr161702 X 101747606 to 101747607 1 + TSS region transcription start site region 161702
Tpt1-ps6 X 101768535 to 101769057 522 + pseudogene tumor protein, translationally-controlled, pseudogene 6
Gm9095 X 101787766 to 101788642 876 + pseudogene predicted gene 9095
Gm4779 X 101790332 to 101794456 4124 - protein coding gene predicted gene 4779
Cpgi22874 X 101794069 to 101794772 703 CpG island CpG island 22874
Tssr163895 X 101794375 to 101794387 12 - TSS region transcription start site region 163895
Tssr163896 X 101794399 to 101794417 18 - TSS region transcription start site region 163896
Tssr163897 X 101794429 to 101794448 19 - TSS region transcription start site region 163897
Tssr161703 X 101794627 to 101794642 15 + TSS region transcription start site region 161703
Tssr161704 X 101794644 to 101794680 36 + TSS region transcription start site region 161704
8030474K03Rik X 101794656 to 101798642 3986 + protein coding gene RIKEN cDNA 8030474K03 gene
Gm9097 X 101800414 to 101801290 876 - pseudogene predicted gene 9097
Gm3858 X 101818196 to 101821816 3620 - unclassified gene predicted gene 3858
H3f3a-ps1 X 101824515 to 101824924 409 + pseudogene H3 histone, family 3A, pseudogene 1
Tssr5655 X 101847446 to 101847449 3 - TSS region transcription start site region 5655
Cpgi22875 X 101849327 to 101850406 1079 CpG island CpG island 22875
Tssr161705 X 101849343 to 101849367 24 + TSS region transcription start site region 161705
Tssr161706 X 101849375 to 101849393 18 + TSS region transcription start site region 161706
Nhsl2 X 101849385 to 102092055 242670 + protein coding gene NHS-like 2
Gm25828 X 101912630 to 101912724 94 - snRNA gene predicted gene, 25828
Cpgi22876 X 101954181 to 101954517 336 CpG island CpG island 22876
Tssr161707 X 101961691 to 101961733 42 + TSS region transcription start site region 161707
Tssr161708 X 102004868 to 102004879 11 + TSS region transcription start site region 161708
Tssr5656 X 102005054 to 102005075 21 + TSS region transcription start site region 5656
Gm27843 X 102013049 to 102013152 103 - miRNA gene predicted gene, 27843
Tssr161709 X 102017402 to 102017467 65 + TSS region transcription start site region 161709
Tssr161710 X 102037249 to 102037260 11 + TSS region transcription start site region 161710
Tssr5657 X 102037268 to 102037277 9 + TSS region transcription start site region 5657
Tssr161711 X 102037281 to 102037305 24 + TSS region transcription start site region 161711
Tssr163898 X 102042521 to 102042571 50 - TSS region transcription start site region 163898
Tssr163899 X 102050723 to 102050729 6 - TSS region transcription start site region 163899
Tssr161712 X 102050807 to 102050821 14 + TSS region transcription start site region 161712
Tssr161713 X 102050837 to 102050853 16 + TSS region transcription start site region 161713
Rtl5 X 102066544 to 102071304 4760 - protein coding gene retrotransposon Gag like 5
Cpgi22877 X 102070898 to 102071519 621 CpG island CpG island 22877
Tssr163900 X 102071188 to 102071204 16 - TSS region transcription start site region 163900
Tssr163901 X 102071226 to 102071239 13 - TSS region transcription start site region 163901
Tssr163902 X 102071300 to 102071322 22 - TSS region transcription start site region 163902
Tssr163903 X 102071325 to 102071341 16 - TSS region transcription start site region 163903