Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:100979490-101789508

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tex11 X 100838648 to 101059639 220991 - protein coding gene testis expressed gene 11
Gm24577 X 101005821 to 101005883 62 + snRNA gene predicted gene, 24577
Gm27510 X 101005896 to 101005959 63 + snRNA gene predicted gene, 27510
Gm14901 X 101059010 to 101059292 282 + pseudogene predicted gene 14901
Cpgi22862 X 101059561 to 101059879 318 CpG island CpG island 22862
Tssr163850 X 101059614 to 101059642 28 - TSS region transcription start site region 163850
Tssr163851 X 101059643 to 101059654 11 - TSS region transcription start site region 163851
Tssr163852 X 101059655 to 101059664 9 - TSS region transcription start site region 163852
Gm9078 X 101062260 to 101063058 798 + pseudogene predicted gene 9078
Gm3820 X 101066824 to 101067704 880 - pseudogene predicted gene 3820
Tssr163853 X 101067720 to 101067745 25 - TSS region transcription start site region 163853
Slc7a3 X 101079210 to 101086020 6810 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 3
Tssr163854 X 101081979 to 101082024 45 - TSS region transcription start site region 163854
Tssr163855 X 101084246 to 101084259 13 - TSS region transcription start site region 163855
Tssr161634 X 101087387 to 101087393 6 + TSS region transcription start site region 161634
Snx12 X 101097786 to 101222563 124777 - protein coding gene sorting nexin 12
DXMit41 X 101098404 to 101098595 191 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 41
E130102C15Rik X 101131600 to 101132989 1389 unclassified gene RIKEN cDNA E130102C15 gene
Gm24061 X 101141433 to 101141552 119 - snoRNA gene predicted gene, 24061
DXMit17 X 101163279 to 101163477 198 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 17
D030036P13Rik X 101201851 to 101204838 2987 unclassified gene RIKEN cDNA D030036P13 gene
Tssr163856 X 101212808 to 101212814 6 - TSS region transcription start site region 163856
Tssr163857 X 101212819 to 101212840 21 - TSS region transcription start site region 163857
Tssr163858 X 101212864 to 101212884 20 - TSS region transcription start site region 163858
Tssr163859 X 101212891 to 101212912 21 - TSS region transcription start site region 163859
Tssr163860 X 101213444 to 101213460 16 - TSS region transcription start site region 163860
Tssr163861 X 101213486 to 101213530 44 - TSS region transcription start site region 163861
Cpgi22863 X 101222179 to 101222791 612 CpG island CpG island 22863
Tssr163862 X 101222426 to 101222561 135 - TSS region transcription start site region 163862
Gm14842 X 101237993 to 101238261 268 + pseudogene predicted gene 14842
Tssr161635 X 101242735 to 101242738 3 + TSS region transcription start site region 161635
Gm22472 X 101242738 to 101242871 133 + snRNA gene predicted gene, 22472
Tssr161636 X 101254153 to 101254171 18 + TSS region transcription start site region 161636
Cpgi22864 X 101254162 to 101255190 1028 CpG island CpG island 22864
Tssr161637 X 101254466 to 101254495 29 + TSS region transcription start site region 161637
Foxo4 X 101254528 to 101260873 6345 + protein coding gene forkhead box O4
Tssr161638 X 101254559 to 101254574 15 + TSS region transcription start site region 161638
Tssr161639 X 101260172 to 101260179 7 + TSS region transcription start site region 161639
Gm614 X 101261376 to 101263992 2616 - protein coding gene predicted gene 614
Gm20489 X 101261405 to 101269023 7618 - protein coding gene predicted gene 20489
Tssr163863 X 101263986 to 101264002 16 - TSS region transcription start site region 163863
Tssr163864 X 101264018 to 101264027 9 - TSS region transcription start site region 163864
Il2rg X 101264385 to 101268255 3870 - protein coding gene interleukin 2 receptor, gamma chain
Tssr163865 X 101264648 to 101264674 26 - TSS region transcription start site region 163865
Tssr163866 X 101264740 to 101264749 9 - TSS region transcription start site region 163866
Tssr163867 X 101264765 to 101264772 7 - TSS region transcription start site region 163867
Tssr163868 X 101264794 to 101264815 21 - TSS region transcription start site region 163868
Tssr163869 X 101264890 to 101264907 17 - TSS region transcription start site region 163869
Tssr163870 X 101264910 to 101264932 22 - TSS region transcription start site region 163870
Tssr163871 X 101264933 to 101264944 11 - TSS region transcription start site region 163871
Tssr163872 X 101264953 to 101264965 12 - TSS region transcription start site region 163872
Tssr163873 X 101264972 to 101264983 11 - TSS region transcription start site region 163873
Tssr163874 X 101265404 to 101265446 42 - TSS region transcription start site region 163874
Tssr163875 X 101265663 to 101265676 13 - TSS region transcription start site region 163875
Tssr163876 X 101265718 to 101265731 13 - TSS region transcription start site region 163876
Tssr163877 X 101266254 to 101266275 21 - TSS region transcription start site region 163877
Tssr163878 X 101266791 to 101266804 13 - TSS region transcription start site region 163878
Tssr161640 X 101266886 to 101266903 17 + TSS region transcription start site region 161640
Tssr163879 X 101267353 to 101267375 22 - TSS region transcription start site region 163879
Tssr163880 X 101268182 to 101268209 27 - TSS region transcription start site region 163880
Tssr163881 X 101268218 to 101268229 11 - TSS region transcription start site region 163881
Cpgi22865 X 101273876 to 101274577 701 CpG island CpG island 22865
Tssr163882 X 101273945 to 101273959 14 - TSS region transcription start site region 163882
Tssr161641 X 101274023 to 101274034 11 + TSS region transcription start site region 161641
Med12 X 101274030 to 101297465 23435 + protein coding gene mediator complex subunit 12
Tssr161642 X 101274048 to 101274057 9 + TSS region transcription start site region 161642
Tssr161643 X 101274063 to 101274088 25 + TSS region transcription start site region 161643
Tssr161644 X 101274106 to 101274148 42 + TSS region transcription start site region 161644
Tssr161645 X 101274198 to 101274252 54 + TSS region transcription start site region 161645
Tssr161646 X 101276182 to 101276196 14 + TSS region transcription start site region 161646
Tssr161647 X 101276672 to 101276681 9 + TSS region transcription start site region 161647
Gm21986 X 101295839 to 101321348 25509 + unclassified non-coding RNA gene predicted gene 21986
Tssr161648 X 101299143 to 101299201 58 + TSS region transcription start site region 161648
Nlgn3 X 101299179 to 101321350 22171 + protein coding gene neuroligin 3
Tssr161649 X 101299207 to 101299218 11 + TSS region transcription start site region 161649
Tssr161650 X 101320041 to 101320060 19 + TSS region transcription start site region 161650
Tssr161651 X 101320169 to 101320184 15 + TSS region transcription start site region 161651
Tssr161652 X 101320914 to 101320930 16 + TSS region transcription start site region 161652
Tssr161653 X 101321241 to 101321246 5 + TSS region transcription start site region 161653
Cpgi22866 X 101332458 to 101333091 633 CpG island CpG island 22866
Tssr163883 X 101332503 to 101332549 46 - TSS region transcription start site region 163883
Gm31385 X 101338088 to 101341552 3464 + lncRNA gene predicted gene, 31385
Tssr161654 X 101376359 to 101376373 14 + TSS region transcription start site region 161654
Gjb1 X 101376378 to 101385629 9251 + protein coding gene gap junction protein, beta 1
Tssr161655 X 101377267 to 101377281 14 + TSS region transcription start site region 161655
Tssr161656 X 101377290 to 101377317 27 + TSS region transcription start site region 161656
Tssr161657 X 101377323 to 101377334 11 + TSS region transcription start site region 161657
Tssr161658 X 101383726 to 101383741 15 + TSS region transcription start site region 161658
Tssr161659 X 101383765 to 101383777 12 + TSS region transcription start site region 161659
Tssr161660 X 101383781 to 101383802 21 + TSS region transcription start site region 161660
Tssr161661 X 101384296 to 101384311 15 + TSS region transcription start site region 161661
Tssr161662 X 101384443 to 101384454 11 + TSS region transcription start site region 161662
Tssr161663 X 101384490 to 101384508 18 + TSS region transcription start site region 161663
Tssr161664 X 101384630 to 101384643 13 + TSS region transcription start site region 161664
Tssr163884 X 101384644 to 101384681 37 - TSS region transcription start site region 163884
Cpgi22867 X 101384665 to 101385045 380 CpG island CpG island 22867
Tssr161665 X 101384860 to 101384873 13 + TSS region transcription start site region 161665
Tssr161666 X 101396509 to 101396512 3 + TSS region transcription start site region 161666
Zmym3 X 101404384 to 101420849 16465 - protein coding gene zinc finger, MYM-type 3
Cpgi22868 X 101419142 to 101419433 291 CpG island CpG island 22868
Cpgi22869 X 101419709 to 101420287 578 CpG island CpG island 22869
Tssr163885 X 101419776 to 101419787 11 - TSS region transcription start site region 163885
Tssr163886 X 101419788 to 101419859 71 - TSS region transcription start site region 163886
Tssr163887 X 101420206 to 101420225 19 - TSS region transcription start site region 163887
Tssr163888 X 101420348 to 101420364 16 - TSS region transcription start site region 163888
Tssr163889 X 101421140 to 101421158 18 - TSS region transcription start site region 163889
Cpgi22870 X 101429372 to 101429970 598 CpG island CpG island 22870
Nono X 101429651 to 101448593 18942 + protein coding gene non-POU-domain-containing, octamer binding protein
Tssr161667 X 101429654 to 101429708 54 + TSS region transcription start site region 161667
Tssr161668 X 101447888 to 101447906 18 + TSS region transcription start site region 161668
Tssr161669 X 101447916 to 101447938 22 + TSS region transcription start site region 161669
Tssr161670 X 101447991 to 101448001 10 + TSS region transcription start site region 161670
Tssr161671 X 101449061 to 101449068 7 + TSS region transcription start site region 161671
Tssr161672 X 101449078 to 101449089 11 + TSS region transcription start site region 161672
Tssr161673 X 101449103 to 101449135 32 + TSS region transcription start site region 161673
Itgb1bp2 X 101449109 to 101453541 4432 + protein coding gene integrin beta 1 binding protein 2
Tssr161674 X 101449164 to 101449170 6 + TSS region transcription start site region 161674
DXMit230 X 101454619 to 101454742 123 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 230
Tssr161675 X 101479289 to 101479300 11 + TSS region transcription start site region 161675
Gm14843 X 101479348 to 101479559 211 + pseudogene predicted gene 14843
Gm6184 X 101518985 to 101520242 1257 + pseudogene predicted gene 6184
Tssr161676 X 101522273 to 101522304 31 + TSS region transcription start site region 161676
Tssr161677 X 101527583 to 101527620 37 + TSS region transcription start site region 161677
Cpgi22871 X 101532479 to 101533113 634 CpG island CpG island 22871
Taf1 X 101532734 to 101601789 69055 + protein coding gene TATA-box binding protein associated factor 1
Tssr161678 X 101532735 to 101532777 42 + TSS region transcription start site region 161678
Tssr161679 X 101532792 to 101532875 83 + TSS region transcription start site region 161679
Tssr161680 X 101533519 to 101533536 17 + TSS region transcription start site region 161680
Tssr163890 X 101639771 to 101639775 4 - TSS region transcription start site region 163890
Tssr161681 X 101640056 to 101640108 52 + TSS region transcription start site region 161681
Ogt X 101640060 to 101684351 44291 + protein coding gene O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
Cpgi22872 X 101640889 to 101641043 154 CpG island CpG island 22872
Tssr161682 X 101641058 to 101641069 11 + TSS region transcription start site region 161682
8430425A16Rik X 101644522 to 101645345 823 unclassified gene RIKEN cDNA 8430425A16 gene
Tssr161683 X 101649386 to 101649401 15 + TSS region transcription start site region 161683
Tssr161684 X 101652358 to 101652375 17 + TSS region transcription start site region 161684
Tssr161685 X 101652386 to 101652411 25 + TSS region transcription start site region 161685
Tssr161686 X 101652475 to 101652487 12 + TSS region transcription start site region 161686
Tssr161687 X 101652502 to 101652515 13 + TSS region transcription start site region 161687
Tssr161688 X 101652530 to 101652562 32 + TSS region transcription start site region 161688
Tssr161689 X 101652606 to 101652645 39 + TSS region transcription start site region 161689
Tssr161690 X 101652704 to 101652731 27 + TSS region transcription start site region 161690
Tssr161691 X 101653224 to 101653237 13 + TSS region transcription start site region 161691
Tssr161692 X 101653469 to 101653558 89 + TSS region transcription start site region 161692
Tssr161693 X 101653618 to 101653624 6 + TSS region transcription start site region 161693
Tssr161694 X 101655550 to 101655560 10 + TSS region transcription start site region 161694
Tssr161695 X 101667344 to 101667362 18 + TSS region transcription start site region 161695
Tssr161696 X 101673039 to 101673072 33 + TSS region transcription start site region 161696
Tssr161697 X 101680061 to 101680077 16 + TSS region transcription start site region 161697
DXMit168 X 101681261 to 101681381 120 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 168
Tssr161698 X 101682936 to 101682948 12 + TSS region transcription start site region 161698
Tssr161699 X 101683140 to 101683159 19 + TSS region transcription start site region 161699
Gm14845 X 101691545 to 101691850 305 - pseudogene predicted gene 14845
Tssr161700 X 101695833 to 101695841 8 + TSS region transcription start site region 161700
Cpgi22873 X 101696840 to 101698450 1610 CpG island CpG island 22873
Tssr161701 X 101706008 to 101706011 3 + TSS region transcription start site region 161701
Gm9089 X 101709036 to 101709561 525 - pseudogene predicted gene 9089
Cxcr3 X 101731535 to 101734147 2612 - protein coding gene chemokine (C-X-C motif) receptor 3
Tssr163891 X 101734110 to 101734123 13 - TSS region transcription start site region 163891
Tssr163892 X 101734125 to 101734142 17 - TSS region transcription start site region 163892
Tssr163893 X 101734157 to 101734168 11 - TSS region transcription start site region 163893
Tssr163894 X 101734200 to 101734211 11 - TSS region transcription start site region 163894
Tssr161702 X 101747606 to 101747607 1 + TSS region transcription start site region 161702
Tpt1-ps6 X 101768535 to 101769057 522 + pseudogene tumor protein, translationally-controlled, pseudogene 6
Gm9095 X 101787766 to 101788642 876 + pseudogene predicted gene 9095