Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:100658648-101239639

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kif4 X 100626065 to 100727271 101206 + protein coding gene kinesin family member 4
Tssr161617 X 100706841 to 100706842 1 + TSS region transcription start site region 161617
Tssr161618 X 100729818 to 100729823 5 + TSS region transcription start site region 161618
Tssr161619 X 100729836 to 100729846 10 + TSS region transcription start site region 161619
Gdpd2 X 100729873 to 100738895 9022 + protein coding gene glycerophosphodiester phosphodiesterase domain containing 2
Tssr161620 X 100729917 to 100729963 46 + TSS region transcription start site region 161620
Tssr161621 X 100729980 to 100729994 14 + TSS region transcription start site region 161621
Tssr161622 X 100730119 to 100730122 3 + TSS region transcription start site region 161622
Tssr161623 X 100730126 to 100730141 15 + TSS region transcription start site region 161623
Tssr161624 X 100730156 to 100730167 11 + TSS region transcription start site region 161624
Tssr161625 X 100730178 to 100730189 11 + TSS region transcription start site region 161625
Gm14866 X 100736983 to 100740929 3946 - unclassified non-coding RNA gene predicted gene 14866
DXMit229 X 100739674 to 100739774 100 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 229
Tssr161626 X 100740905 to 100740907 2 + TSS region transcription start site region 161626
Gm14902 X 100740995 to 100748671 7676 + lincRNA gene predicted gene 14902
Tssr5653 X 100741090 to 100741094 4 + TSS region transcription start site region 5653
Gm22160 X 100749421 to 100749748 327 + unclassified non-coding RNA gene predicted gene, 22160
DXMit169 X 100756254 to 100756364 110 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 169
DXMit1001 X 100757760 to 100757908 148 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 1001
Cpgi22860 X 100767656 to 100768513 857 CpG island CpG island 22860
Tssr161627 X 100767719 to 100767742 23 + TSS region transcription start site region 161627
Dlg3 X 100767722 to 100818410 50688 + protein coding gene discs large MAGUK scaffold protein 3
Tssr161628 X 100774790 to 100774807 17 + TSS region transcription start site region 161628
Cpgi22861 X 100777005 to 100777486 481 CpG island CpG island 22861
Tssr161629 X 100777243 to 100777268 25 + TSS region transcription start site region 161629
Tssr161630 X 100777273 to 100777296 23 + TSS region transcription start site region 161630
Tssr161631 X 100777306 to 100777313 7 + TSS region transcription start site region 161631
Tssr161632 X 100795449 to 100795476 27 + TSS region transcription start site region 161632
Tssr5654 X 100796581 to 100796620 39 + TSS region transcription start site region 5654
Tssr161633 X 100798415 to 100798431 16 + TSS region transcription start site region 161633
Tex11 X 100838648 to 101059639 220991 - protein coding gene testis expressed gene 11
Gm19083 X 100969419 to 100971848 2429 - pseudogene predicted gene, 19083
Gm24577 X 101005821 to 101005883 62 + snRNA gene predicted gene, 24577
Gm27510 X 101005896 to 101005959 63 + snRNA gene predicted gene, 27510
Gm14901 X 101059010 to 101059292 282 + pseudogene predicted gene 14901
Cpgi22862 X 101059561 to 101059879 318 CpG island CpG island 22862
Tssr163850 X 101059614 to 101059642 28 - TSS region transcription start site region 163850
Tssr163851 X 101059643 to 101059654 11 - TSS region transcription start site region 163851
Tssr163852 X 101059655 to 101059664 9 - TSS region transcription start site region 163852
Gm9078 X 101062260 to 101063058 798 + pseudogene predicted gene 9078
Gm3820 X 101066824 to 101067704 880 - pseudogene predicted gene 3820
Tssr163853 X 101067720 to 101067745 25 - TSS region transcription start site region 163853
Slc7a3 X 101079210 to 101086020 6810 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 3
Tssr163854 X 101081979 to 101082024 45 - TSS region transcription start site region 163854
Tssr163855 X 101084246 to 101084259 13 - TSS region transcription start site region 163855
Tssr161634 X 101087387 to 101087393 6 + TSS region transcription start site region 161634
Snx12 X 101097786 to 101222563 124777 - protein coding gene sorting nexin 12
DXMit41 X 101098404 to 101098595 191 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 41
E130102C15Rik X 101131600 to 101132989 1389 unclassified gene RIKEN cDNA E130102C15 gene
Gm24061 X 101141433 to 101141552 119 - snoRNA gene predicted gene, 24061
DXMit17 X 101163279 to 101163477 198 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 17
D030036P13Rik X 101201851 to 101204838 2987 unclassified gene RIKEN cDNA D030036P13 gene
Tssr163856 X 101212808 to 101212814 6 - TSS region transcription start site region 163856
Tssr163857 X 101212819 to 101212840 21 - TSS region transcription start site region 163857
Tssr163858 X 101212864 to 101212884 20 - TSS region transcription start site region 163858
Tssr163859 X 101212891 to 101212912 21 - TSS region transcription start site region 163859
Tssr163860 X 101213444 to 101213460 16 - TSS region transcription start site region 163860
Tssr163861 X 101213486 to 101213530 44 - TSS region transcription start site region 163861
Cpgi22863 X 101222179 to 101222791 612 CpG island CpG island 22863
Tssr163862 X 101222426 to 101222561 135 - TSS region transcription start site region 163862
Gm14842 X 101237993 to 101238261 268 + pseudogene predicted gene 14842