Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:99896869-101036881

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Renf1 9 52123178 to 99910428 47787250 QTL renal failure 1
Loh1 9 98798268 to 99910428 1112160 heritable phenotypic marker loss of heterozygosity, region 1
D9Mit12 9 99910333 to 99910428 95 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 12
Char10 9 99910333 to 99910428 95 QTL P. chabaudi malaria resistance QTL 10
Idd2 9 99910333 to 99910428 95 QTL insulin dependent diabetes susceptibility 2
Sluc11 9 99910333 to 99910428 95 QTL susceptibility to lung cancer 11
Gm23594 9 99943709 to 99943842 133 + snoRNA gene predicted gene, 23594
Gm8641 9 99946564 to 99947389 825 - pseudogene predicted gene 8641
Cpgi22206 9 99947382 to 99947542 160 CpG island CpG island 22206
4930519F24Rik 9 100022300 to 100034670 12370 + lincRNA gene RIKEN cDNA 4930519F24 gene
Tssr86693 9 100022305 to 100022316 11 + TSS region transcription start site region 86693
Tssr86694 9 100022317 to 100022327 10 + TSS region transcription start site region 86694
4930540E01Rik 9 100173001 to 100174146 1145 - lncRNA gene RIKEN cDNA 4930540E01 gene
D9Mit183 9 100176876 to 100177012 136 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 183
D9Mit147 9 100225260 to 100225454 194 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 147
Gm28167 9 100321611 to 100323524 1913 - lincRNA gene predicted gene 28167
Gm34397 9 100384202 to 100391907 7705 - lincRNA gene predicted gene, 34397
Tssr86695 9 100393316 to 100393322 6 + TSS region transcription start site region 86695
Gm28267 9 100404495 to 100404759 264 + pseudogene predicted gene 28267
D9Mit36 9 100430895 to 100431112 217 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 36
Cpgi22207 9 100446049 to 100446457 408 CpG island CpG island 22207
Gm28166 9 100450322 to 100451912 1590 + lincRNA gene predicted gene 28166
Tssr86696 9 100450358 to 100450363 5 + TSS region transcription start site region 86696
D9Mit346 9 100451211 to 100451330 119 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 346
Cpgi22208 9 100454419 to 100454666 247 CpG island CpG island 22208
Il20rb 9 100457719 to 100486473 28754 - protein coding gene interleukin 20 receptor beta
Cpgi22209 9 100463408 to 100463713 305 CpG island CpG island 22209
Tssr91085 9 100466817 to 100466828 11 - TSS region transcription start site region 91085
Tssr91086 9 100466857 to 100466866 9 - TSS region transcription start site region 91086
Tssr91087 9 100466869 to 100466881 12 - TSS region transcription start site region 91087
Tssr91088 9 100466884 to 100466893 9 - TSS region transcription start site region 91088
Tssr91089 9 100480014 to 100480044 30 - TSS region transcription start site region 91089
Tssr91090 9 100481243 to 100481247 4 - TSS region transcription start site region 91090
D9Dcr38 9 100483304 to 100483399 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 38
Tssr91091 9 100486462 to 100486492 30 - TSS region transcription start site region 91091
Nck1 9 100494302 to 100546134 51832 - protein coding gene non-catalytic region of tyrosine kinase adaptor protein 1
B830007D08Rik 9 100500796 to 100501630 834 unclassified gene RIKEN cDNA B830007D08 gene
Tssr86697 9 100504587 to 100504589 2 + TSS region transcription start site region 86697
Tssr91092 9 100505167 to 100505171 4 - TSS region transcription start site region 91092
Tssr91093 9 100506804 to 100506811 7 - TSS region transcription start site region 91093
Tssr91094 9 100506815 to 100506833 18 - TSS region transcription start site region 91094
Tssr91095 9 100506844 to 100506856 12 - TSS region transcription start site region 91095
Gm28586 9 100530616 to 100531071 455 - sense intronic lncRNA gene predicted gene 28586
Tssr91096 9 100539514 to 100539522 8 - TSS region transcription start site region 91096
Gm46139 9 100540273 to 100551230 10957 + protein coding gene predicted gene, 46139
Cpgi22210 9 100545334 to 100546721 1387 CpG island CpG island 22210
Tssr91097 9 100546054 to 100546092 38 - TSS region transcription start site region 91097
Tssr91098 9 100546093 to 100546139 46 - TSS region transcription start site region 91098
Tssr2988 9 100546251 to 100546321 70 + TSS region transcription start site region 2988
Cpgi22211 9 100551186 to 100551421 235 CpG island CpG island 22211
Slc35g2 9 100552188 to 100571085 18897 - protein coding gene solute carrier family 35, member G2
Cpgi22212 9 100570044 to 100571270 1226 CpG island CpG island 22212
Tssr91099 9 100571049 to 100571128 79 - TSS region transcription start site region 91099
Tssr86698 9 100597686 to 100597724 38 + TSS region transcription start site region 86698
Stag1 9 100597709 to 100958544 360835 + protein coding gene stromal antigen 1
Tssr86699 9 100597953 to 100598002 49 + TSS region transcription start site region 86699
Gm47803 9 100604854 to 100604988 134 - pseudogene predicted gene, 47803
Gm8661 9 100624974 to 100625965 991 - pseudogene predicted gene 8661
Cpgi22213 9 100642690 to 100644676 1986 CpG island CpG island 22213
Tssr86700 9 100643525 to 100643542 17 + TSS region transcription start site region 86700
Tssr86701 9 100643551 to 100643564 13 + TSS region transcription start site region 86701
Tssr86702 9 100643572 to 100643601 29 + TSS region transcription start site region 86702
Tssr86703 9 100643605 to 100643626 21 + TSS region transcription start site region 86703
Tssr86704 9 100643630 to 100643637 7 + TSS region transcription start site region 86704
Tssr86705 9 100643755 to 100643764 9 + TSS region transcription start site region 86705
Tssr86706 9 100645007 to 100645011 4 + TSS region transcription start site region 86706
Tssr86707 9 100645245 to 100645251 6 + TSS region transcription start site region 86707
Tssr86708 9 100649224 to 100649230 6 + TSS region transcription start site region 86708
Gm37204 9 100665839 to 100669799 3960 + unclassified gene predicted gene, 37204
Gm38297 9 100703213 to 100704269 1056 + unclassified gene predicted gene, 38297
Tssr86709 9 100719401 to 100719405 4 + TSS region transcription start site region 86709
Tssr86710 9 100807302 to 100807305 3 + TSS region transcription start site region 86710
Tssr86711 9 100847057 to 100847062 5 + TSS region transcription start site region 86711
Gm3081 9 100875463 to 100877964 2501 + pseudogene predicted gene 3081
Tssr86712 9 100885026 to 100885030 4 + TSS region transcription start site region 86712
Tssr86713 9 100899123 to 100899125 2 + TSS region transcription start site region 86713
Pccb 9 100982032 to 101034898 52866 - protein coding gene propionyl Coenzyme A carboxylase, beta polypeptide
Cpgi22214 9 100984416 to 100984749 333 CpG island CpG island 22214
Cpgi22215 9 100985294 to 100985628 334 CpG island CpG island 22215
Tssr91100 9 100987949 to 100987960 11 - TSS region transcription start site region 91100
Tssr91101 9 100987976 to 100988004 28 - TSS region transcription start site region 91101
6720484G13Rik 9 101010422 to 101011050 628 unclassified gene RIKEN cDNA 6720484G13 gene
Cpgi22216 9 101034371 to 101035124 753 CpG island CpG island 22216
Tssr91102 9 101034857 to 101034867 10 - TSS region transcription start site region 91102
Tssr86714 9 101034877 to 101034879 2 + TSS region transcription start site region 86714
Tssr91103 9 101034892 to 101034904 12 - TSS region transcription start site region 91103