Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:99833001-100514146

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Renf1 9 52123178 to 99910428 47787250 QTL renal failure 1
Loh1 9 98798268 to 99910428 1112160 heritable phenotypic marker loss of heterozygosity, region 1
Gm518 9 99823289 to 99849089 25800 + pseudogene predicted pseudogene 518
Gm47757 9 99848283 to 99858313 10030 - lincRNA gene predicted gene, 47757
Tssr86692 9 99856090 to 99856095 5 + TSS region transcription start site region 86692
Tssr91082 9 99858856 to 99858885 29 - TSS region transcription start site region 91082
Acigg11 9 99865901 to 99865901 0 QTL anti COL7 IgG3 antibody 11
Cpgi22201 9 99868681 to 99869906 1225 CpG island CpG island 22201
Cpgi22202 9 99869915 to 99870207 292 CpG island CpG island 22202
Cpgi22203 9 99870493 to 99870967 474 CpG island CpG island 22203
D9Dcr37 9 99871170 to 99871266 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 37
Cpgi22204 9 99871276 to 99872119 843 CpG island CpG island 22204
1700024K11Rik 9 99872256 to 99872604 348 unclassified gene RIKEN cDNA 1700024K11 gene
Sox14 9 99874106 to 99876170 2064 - protein coding gene SRY (sex determining region Y)-box 14
Cpgi22205 9 99874859 to 99876470 1611 CpG island CpG island 22205
Tssr91083 9 99876147 to 99876193 46 - TSS region transcription start site region 91083
Tssr91084 9 99876198 to 99876212 14 - TSS region transcription start site region 91084
Sluc11 9 99910333 to 99910428 95 QTL susceptibility to lung cancer 11
Idd2 9 99910333 to 99910428 95 QTL insulin dependent diabetes susceptibility 2
Char10 9 99910333 to 99910428 95 QTL P. chabaudi malaria resistance QTL 10
D9Mit12 9 99910333 to 99910428 95 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 12
Gm23594 9 99943709 to 99943842 133 + snoRNA gene predicted gene, 23594
Gm8641 9 99946564 to 99947389 825 - pseudogene predicted gene 8641
Cpgi22206 9 99947382 to 99947542 160 CpG island CpG island 22206
4930519F24Rik 9 100022300 to 100034670 12370 + lincRNA gene RIKEN cDNA 4930519F24 gene
Tssr86693 9 100022305 to 100022316 11 + TSS region transcription start site region 86693
Tssr86694 9 100022317 to 100022327 10 + TSS region transcription start site region 86694
4930540E01Rik 9 100173001 to 100174146 1145 - lncRNA gene RIKEN cDNA 4930540E01 gene
D9Mit183 9 100176876 to 100177012 136 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 183
D9Mit147 9 100225260 to 100225454 194 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 147
Gm28167 9 100321611 to 100323524 1913 - lincRNA gene predicted gene 28167
Gm34397 9 100384202 to 100391907 7705 - lincRNA gene predicted gene, 34397
Tssr86695 9 100393316 to 100393322 6 + TSS region transcription start site region 86695
Gm28267 9 100404495 to 100404759 264 + pseudogene predicted gene 28267
D9Mit36 9 100430895 to 100431112 217 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 36
Cpgi22207 9 100446049 to 100446457 408 CpG island CpG island 22207
Gm28166 9 100450322 to 100451912 1590 + lincRNA gene predicted gene 28166
Tssr86696 9 100450358 to 100450363 5 + TSS region transcription start site region 86696
D9Mit346 9 100451211 to 100451330 119 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 346
Cpgi22208 9 100454419 to 100454666 247 CpG island CpG island 22208
Il20rb 9 100457719 to 100486473 28754 - protein coding gene interleukin 20 receptor beta
Cpgi22209 9 100463408 to 100463713 305 CpG island CpG island 22209
Tssr91085 9 100466817 to 100466828 11 - TSS region transcription start site region 91085
Tssr91086 9 100466857 to 100466866 9 - TSS region transcription start site region 91086
Tssr91087 9 100466869 to 100466881 12 - TSS region transcription start site region 91087
Tssr91088 9 100466884 to 100466893 9 - TSS region transcription start site region 91088
Tssr91089 9 100480014 to 100480044 30 - TSS region transcription start site region 91089
Tssr91090 9 100481243 to 100481247 4 - TSS region transcription start site region 91090
D9Dcr38 9 100483304 to 100483399 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 38
Tssr91091 9 100486462 to 100486492 30 - TSS region transcription start site region 91091
Nck1 9 100494302 to 100546134 51832 - protein coding gene non-catalytic region of tyrosine kinase adaptor protein 1
B830007D08Rik 9 100500796 to 100501630 834 unclassified gene RIKEN cDNA B830007D08 gene
Tssr86697 9 100504587 to 100504589 2 + TSS region transcription start site region 86697
Tssr91092 9 100505167 to 100505171 4 - TSS region transcription start site region 91092
Tssr91093 9 100506804 to 100506811 7 - TSS region transcription start site region 91093
Tssr91094 9 100506815 to 100506833 18 - TSS region transcription start site region 91094
Tssr91095 9 100506844 to 100506856 12 - TSS region transcription start site region 91095