Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:99542032-102474898

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229 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Renf1 9 52123178 to 99910428 47787250 QTL renal failure 1
Loh1 9 98798268 to 99910428 1112160 heritable phenotypic marker loss of heterozygosity, region 1
Armc8 9 99478372 to 99568899 90527 - protein coding gene armadillo repeat containing 8
Cpgi22196 9 99568113 to 99569086 973 CpG island CpG island 22196
Tssr91072 9 99568640 to 99568678 38 - TSS region transcription start site region 91072
Tssr91073 9 99568849 to 99568911 62 - TSS region transcription start site region 91073
Cpgi22197 9 99575614 to 99576310 696 CpG island CpG island 22197
Dbr1 9 99575775 to 99584461 8686 + protein coding gene debranching RNA lariats 1
Tssr86684 9 99575776 to 99575829 53 + TSS region transcription start site region 86684
Tssr86685 9 99612468 to 99612529 61 + TSS region transcription start site region 86685
A4gnt 9 99612502 to 99622367 9865 + protein coding gene alpha-1,4-N-acetylglucosaminyltransferase
Tssr86686 9 99612545 to 99612557 12 + TSS region transcription start site region 86686
Dzip1l 9 99629496 to 99669256 39760 + protein coding gene DAZ interacting protein 1-like
Tssr86687 9 99629531 to 99629592 61 + TSS region transcription start site region 86687
Cpgi22198 9 99629549 to 99630121 572 CpG island CpG island 22198
Tssr86688 9 99629823 to 99629853 30 + TSS region transcription start site region 86688
Tssr86689 9 99629855 to 99629876 21 + TSS region transcription start site region 86689
Tssr86690 9 99632643 to 99632658 15 + TSS region transcription start site region 86690
Cldn18 9 99690796 to 99717267 26471 - protein coding gene claudin 18
Tssr91074 9 99691684 to 99691687 3 - TSS region transcription start site region 91074
Tssr91075 9 99692179 to 99692204 25 - TSS region transcription start site region 91075
Tssr91076 9 99692487 to 99692503 16 - TSS region transcription start site region 91076
Tssr91077 9 99692570 to 99692582 12 - TSS region transcription start site region 91077
Gm16004 9 99708399 to 99756043 47644 + antisense lncRNA gene predicted gene 16004
Tssr91078 9 99709952 to 99709988 36 - TSS region transcription start site region 91078
Tssr91079 9 99710005 to 99710022 17 - TSS region transcription start site region 91079
Tssr91080 9 99710069 to 99710085 16 - TSS region transcription start site region 91080
Cpgi22199 9 99717155 to 99717319 164 CpG island CpG island 22199
Tssr91081 9 99717259 to 99717274 15 - TSS region transcription start site region 91081
Cpgi22200 9 99730525 to 99730804 279 CpG island CpG island 22200
Gm23949 9 99750391 to 99750517 126 - snoRNA gene predicted gene, 23949
D9Dcr35 9 99769382 to 99769477 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 35
D9Dcr36 9 99789404 to 99789509 105 DNA segment DNA segment, Chr 9, Derry C. Roopenian 36
Gm518 9 99823289 to 99849089 25800 + pseudogene predicted pseudogene 518
Tssr86691 9 99828659 to 99828660 1 + TSS region transcription start site region 86691
Gm47757 9 99848283 to 99858313 10030 - lincRNA gene predicted gene, 47757
Tssr86692 9 99856090 to 99856095 5 + TSS region transcription start site region 86692
Tssr91082 9 99858856 to 99858885 29 - TSS region transcription start site region 91082
Acigg11 9 99865901 to 99865901 0 QTL anti COL7 IgG3 antibody 11
Cpgi22201 9 99868681 to 99869906 1225 CpG island CpG island 22201
Cpgi22202 9 99869915 to 99870207 292 CpG island CpG island 22202
Cpgi22203 9 99870493 to 99870967 474 CpG island CpG island 22203
D9Dcr37 9 99871170 to 99871266 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 37
Cpgi22204 9 99871276 to 99872119 843 CpG island CpG island 22204
1700024K11Rik 9 99872256 to 99872604 348 unclassified gene RIKEN cDNA 1700024K11 gene
Sox14 9 99874106 to 99876170 2064 - protein coding gene SRY (sex determining region Y)-box 14
Cpgi22205 9 99874859 to 99876470 1611 CpG island CpG island 22205
Tssr91083 9 99876147 to 99876193 46 - TSS region transcription start site region 91083
Tssr91084 9 99876198 to 99876212 14 - TSS region transcription start site region 91084
Sluc11 9 99910333 to 99910428 95 QTL susceptibility to lung cancer 11
Char10 9 99910333 to 99910428 95 QTL P. chabaudi malaria resistance QTL 10
D9Mit12 9 99910333 to 99910428 95 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 12
Idd2 9 99910333 to 99910428 95 QTL insulin dependent diabetes susceptibility 2
Gm23594 9 99943709 to 99943842 133 + snoRNA gene predicted gene, 23594
Gm8641 9 99946564 to 99947389 825 - pseudogene predicted gene 8641
Cpgi22206 9 99947382 to 99947542 160 CpG island CpG island 22206
4930519F24Rik 9 100022300 to 100034670 12370 + lincRNA gene RIKEN cDNA 4930519F24 gene
Tssr86693 9 100022305 to 100022316 11 + TSS region transcription start site region 86693
Tssr86694 9 100022317 to 100022327 10 + TSS region transcription start site region 86694
4930540E01Rik 9 100173001 to 100174146 1145 - lncRNA gene RIKEN cDNA 4930540E01 gene
D9Mit183 9 100176876 to 100177012 136 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 183
D9Mit147 9 100225260 to 100225454 194 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 147
Gm28167 9 100321611 to 100323524 1913 - lincRNA gene predicted gene 28167
Gm34397 9 100384202 to 100391907 7705 - lincRNA gene predicted gene, 34397
Tssr86695 9 100393316 to 100393322 6 + TSS region transcription start site region 86695
Gm28267 9 100404495 to 100404759 264 + pseudogene predicted gene 28267
D9Mit36 9 100430895 to 100431112 217 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 36
Cpgi22207 9 100446049 to 100446457 408 CpG island CpG island 22207
Gm28166 9 100450322 to 100451912 1590 + lincRNA gene predicted gene 28166
Tssr86696 9 100450358 to 100450363 5 + TSS region transcription start site region 86696
D9Mit346 9 100451211 to 100451330 119 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 346
Cpgi22208 9 100454419 to 100454666 247 CpG island CpG island 22208
Il20rb 9 100457719 to 100486473 28754 - protein coding gene interleukin 20 receptor beta
Cpgi22209 9 100463408 to 100463713 305 CpG island CpG island 22209
Tssr91085 9 100466817 to 100466828 11 - TSS region transcription start site region 91085
Tssr91086 9 100466857 to 100466866 9 - TSS region transcription start site region 91086
Tssr91087 9 100466869 to 100466881 12 - TSS region transcription start site region 91087
Tssr91088 9 100466884 to 100466893 9 - TSS region transcription start site region 91088
Tssr91089 9 100480014 to 100480044 30 - TSS region transcription start site region 91089
Tssr91090 9 100481243 to 100481247 4 - TSS region transcription start site region 91090
D9Dcr38 9 100483304 to 100483399 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 38
Tssr91091 9 100486462 to 100486492 30 - TSS region transcription start site region 91091
Nck1 9 100494302 to 100546134 51832 - protein coding gene non-catalytic region of tyrosine kinase adaptor protein 1
B830007D08Rik 9 100500796 to 100501630 834 unclassified gene RIKEN cDNA B830007D08 gene
Tssr86697 9 100504587 to 100504589 2 + TSS region transcription start site region 86697
Tssr91092 9 100505167 to 100505171 4 - TSS region transcription start site region 91092
Tssr91093 9 100506804 to 100506811 7 - TSS region transcription start site region 91093
Tssr91094 9 100506815 to 100506833 18 - TSS region transcription start site region 91094
Tssr91095 9 100506844 to 100506856 12 - TSS region transcription start site region 91095
Gm28586 9 100530616 to 100531071 455 - sense intronic lncRNA gene predicted gene 28586
Tssr91096 9 100539514 to 100539522 8 - TSS region transcription start site region 91096
Gm46139 9 100540273 to 100551230 10957 + protein coding gene predicted gene, 46139
Cpgi22210 9 100545334 to 100546721 1387 CpG island CpG island 22210
Tssr91097 9 100546054 to 100546092 38 - TSS region transcription start site region 91097
Tssr91098 9 100546093 to 100546139 46 - TSS region transcription start site region 91098
Tssr2988 9 100546251 to 100546321 70 + TSS region transcription start site region 2988
Cpgi22211 9 100551186 to 100551421 235 CpG island CpG island 22211
Slc35g2 9 100552188 to 100571085 18897 - protein coding gene solute carrier family 35, member G2
Cpgi22212 9 100570044 to 100571270 1226 CpG island CpG island 22212
Tssr91099 9 100571049 to 100571128 79 - TSS region transcription start site region 91099
Tssr86698 9 100597686 to 100597724 38 + TSS region transcription start site region 86698
Stag1 9 100597709 to 100958544 360835 + protein coding gene stromal antigen 1
Tssr86699 9 100597953 to 100598002 49 + TSS region transcription start site region 86699
Gm47803 9 100604854 to 100604988 134 - pseudogene predicted gene, 47803
Gm8661 9 100624974 to 100625965 991 - pseudogene predicted gene 8661
Cpgi22213 9 100642690 to 100644676 1986 CpG island CpG island 22213
Tssr86700 9 100643525 to 100643542 17 + TSS region transcription start site region 86700
Tssr86701 9 100643551 to 100643564 13 + TSS region transcription start site region 86701
Tssr86702 9 100643572 to 100643601 29 + TSS region transcription start site region 86702
Tssr86703 9 100643605 to 100643626 21 + TSS region transcription start site region 86703
Tssr86704 9 100643630 to 100643637 7 + TSS region transcription start site region 86704
Tssr86705 9 100643755 to 100643764 9 + TSS region transcription start site region 86705
Tssr86706 9 100645007 to 100645011 4 + TSS region transcription start site region 86706
Tssr86707 9 100645245 to 100645251 6 + TSS region transcription start site region 86707
Tssr86708 9 100649224 to 100649230 6 + TSS region transcription start site region 86708
Gm37204 9 100665839 to 100669799 3960 + unclassified gene predicted gene, 37204
Gm38297 9 100703213 to 100704269 1056 + unclassified gene predicted gene, 38297
Tssr86709 9 100719401 to 100719405 4 + TSS region transcription start site region 86709
Tssr86710 9 100807302 to 100807305 3 + TSS region transcription start site region 86710
Tssr86711 9 100847057 to 100847062 5 + TSS region transcription start site region 86711
Gm3081 9 100875463 to 100877964 2501 + pseudogene predicted gene 3081
Tssr86712 9 100885026 to 100885030 4 + TSS region transcription start site region 86712
Tssr86713 9 100899123 to 100899125 2 + TSS region transcription start site region 86713
Pccb 9 100982032 to 101034898 52866 - protein coding gene propionyl Coenzyme A carboxylase, beta polypeptide
Cpgi22214 9 100984416 to 100984749 333 CpG island CpG island 22214
Cpgi22215 9 100985294 to 100985628 334 CpG island CpG island 22215
Tssr91100 9 100987949 to 100987960 11 - TSS region transcription start site region 91100
Tssr91101 9 100987976 to 100988004 28 - TSS region transcription start site region 91101
6720484G13Rik 9 101010422 to 101011050 628 unclassified gene RIKEN cDNA 6720484G13 gene
Cpgi22216 9 101034371 to 101035124 753 CpG island CpG island 22216
Tssr91102 9 101034857 to 101034867 10 - TSS region transcription start site region 91102
Tssr86714 9 101034877 to 101034879 2 + TSS region transcription start site region 86714
Tssr91103 9 101034892 to 101034904 12 - TSS region transcription start site region 91103
Tssr86715 9 101053514 to 101053534 20 + TSS region transcription start site region 86715
Gm3096 9 101053542 to 101053905 363 + pseudogene predicted gene 3096
Gm46140 9 101070745 to 101073186 2441 - pseudogene predicted gene, 46140
Tssr91104 9 101071150 to 101071151 1 - TSS region transcription start site region 91104
Cpgi22217 9 101073316 to 101075527 2211 CpG island CpG island 22217
Tssr2989 9 101074042 to 101074077 35 + TSS region transcription start site region 2989
Tssr2990 9 101074092 to 101074112 20 + TSS region transcription start site region 2990
Msl2 9 101074101 to 101104800 30699 + protein coding gene MSL complex subunit 2
Tssr2991 9 101074122 to 101074140 18 + TSS region transcription start site region 2991
Tssr2992 9 101074387 to 101074453 66 - TSS region transcription start site region 2992
Tssr2993 9 101074583 to 101074675 92 + TSS region transcription start site region 2993
Tssr2994 9 101074681 to 101074707 26 + TSS region transcription start site region 2994
Gm37553 9 101092977 to 101094578 1601 + unclassified gene predicted gene, 37553
Tssr86716 9 101097893 to 101097904 11 + TSS region transcription start site region 86716
Ppp2r3a 9 101105084 to 101251795 146711 - protein coding gene protein phosphatase 2, regulatory subunit B'', alpha
Gm37962 9 101113805 to 101115838 2033 + unclassified gene predicted gene, 37962
Gm37621 9 101116701 to 101122231 5530 + unclassified gene predicted gene, 37621
Tssr91105 9 101120728 to 101120732 4 - TSS region transcription start site region 91105
D9Dcr39 9 101127213 to 101127306 93 DNA segment DNA segment, Chr 9, Derry C. Roopenian 39
Gm37953 9 101150312 to 101152195 1883 + unclassified gene predicted gene, 37953
Gm38344 9 101186556 to 101187908 1352 - unclassified gene predicted gene, 38344
Tssr91106 9 101187781 to 101187785 4 - TSS region transcription start site region 91106
Gm37314 9 101188598 to 101191282 2684 - unclassified gene predicted gene, 37314
Tssr91107 9 101198940 to 101198954 14 - TSS region transcription start site region 91107
Tssr91108 9 101198976 to 101198997 21 - TSS region transcription start site region 91108
Tssr91109 9 101198999 to 101199080 81 - TSS region transcription start site region 91109
Tssr91110 9 101199081 to 101199088 7 - TSS region transcription start site region 91110
Gm24338 9 101222952 to 101223078 126 + snoRNA gene predicted gene, 24338
Tssr91111 9 101243726 to 101243741 15 - TSS region transcription start site region 91111
Cpgi22218 9 101250982 to 101252082 1100 CpG island CpG island 22218
Tssr91112 9 101251470 to 101251481 11 - TSS region transcription start site region 91112
Tssr86717 9 101251535 to 101251537 2 + TSS region transcription start site region 86717
Tssr91113 9 101251742 to 101251756 14 - TSS region transcription start site region 91113
Tssr91114 9 101251776 to 101251802 26 - TSS region transcription start site region 91114
Tssr91115 9 101251810 to 101251839 29 - TSS region transcription start site region 91115
Tssr91116 9 101251841 to 101251852 11 - TSS region transcription start site region 91116
Gm3121 9 101281368 to 101281773 405 - pseudogene predicted gene 3121
Gm28660 9 101337720 to 101337972 252 - pseudogene predicted gene 28660
Gm28979 9 101342194 to 101348017 5823 + lincRNA gene predicted gene 28979
Gm24638 9 101392979 to 101393110 131 - snoRNA gene predicted gene, 24638
Gm29385 9 101435683 to 101436045 362 - pseudogene predicted gene 29385
Gm5161 9 101448501 to 101449353 852 - pseudogene predicted pseudogene 5161
Nociq1 9 101528818 to 101528921 103 QTL nociceptive sensitivity inflammatory QTL 1
D9Mit182 9 101528818 to 101528921 103 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 182
D9Dcr40 9 101528818 to 101528916 98 DNA segment DNA segment, Chr 9, Derry C. Roopenian 40
Tbbmd4 9 101528921 to 76117105 -25411816 QTL total body bone mineral density 4
Dxmod 9 101528921 to 49541121 -51987800 QTL doxorubicin nephropathy modifier
D9Mgc1 9 101569128 to 101569282 154 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 1
D9Mit115 9 101612788 to 101612932 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 115
D9Mgc2 9 101657770 to 101657885 115 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 2
D9Mgc3 9 101740972 to 101741188 216 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 3
Gm47932 9 101754915 to 101757705 2790 - pseudogene predicted gene, 47932
Gm47933 9 101757753 to 101758863 1110 - pseudogene predicted gene, 47933
Gm47934 9 101758542 to 101758809 267 + pseudogene predicted gene, 47934
Gm29521 9 101770369 to 101862489 92120 - unclassified non-coding RNA gene predicted gene 29521
9630041A04Rik 9 101861841 to 101943228 81387 + protein coding gene RIKEN cDNA 9630041A04 gene
Tssr91117 9 101862394 to 101862401 7 - TSS region transcription start site region 91117
Tssr91118 9 101862411 to 101862426 15 - TSS region transcription start site region 91118
Tssr91119 9 101862443 to 101862465 22 - TSS region transcription start site region 91119
Tssr91120 9 101862497 to 101862508 11 - TSS region transcription start site region 91120
Tssr91121 9 101862657 to 101862666 9 - TSS region transcription start site region 91121
Gm37460 9 101911008 to 101913256 2248 - unclassified gene predicted gene, 37460
Ephb1 9 101922128 to 102354693 432565 - protein coding gene Eph receptor B1
D9Mgc4 9 101924870 to 101925178 308 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 4
D9Mgc5 9 101939585 to 101939845 260 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 5
Tssr86718 9 101989193 to 101989201 8 + TSS region transcription start site region 86718
Gm31326 9 101989260 to 101990307 1047 + lncRNA gene predicted gene, 31326